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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0300100 |
| Transcript ID | LotjaGi5g1v0300100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|Q40106|TBB2_LUPAL Tubulin beta-2 chain; TrEMBL-Plants: tr|M5WZG9|M5WZG9_PRUPE Tubulin beta chain; Found in the gene: LotjaGi5g1v0300100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61737641..61739628) extracted from Lotus japonicus Gifu genome v1.2.
ATGCGTGAGATTCTTCACATCCAGGGAGGACAATGCGGGAACCAGATCGGAGCAAAGTTCTGGGAGGTGGTGTGCGCGGA GCACGGGATCGACTCCACCGGAAGGTACCAGGGGAACACTGACATGCAACTCGAGCGAGTCAATGTCTACTACAATGAAG CGAGTTGCGGGAGGTTTGTACCTAGGGCGGTGCTCATGGATCTGGAGCCTGGCACCATGGACAGTGTCAGATCTGGTCCA TACGGCCAGATTTTCCGGCCGGATAACTTTGTTTTCGGACAGTCCGGCGCCGGAAACAACTGGGCTAAGGGTCACTACAC CGAGGGGGCTGAGTTGATTGACTCGGTCCTCGATGTGGTCAGAAAGGAGGCTGAGAACTGTGATTGCCTTCAAGGTATTG TTTACTACTTCACTTCAATTTCTGATCCAAGTTTTTTTGAGATTTTAGGGTTTTGTTTTTTGAATTTTTTCTGCAGTTTG TTTCTCCACAATGTTGTATACTCTGTGTTTACGGTTTATTTTTCAATTTGATTTTTAGTTGTTGATGATTTTCTTGTTTG TTTGTTAACGATTTAGTGATCTCTGCGTTTTGAATGAAAATGATGAACTCTGAGTTGCAAATCTCGCTGTGTTATCAAGT TTTGAAGTTAAATCGTAGAGTATGGGACCTTGATCTGGTGAATAGCGTTTGTTTGTGCTGATTTTGAAGTTTGGTAGTTC TTACAAACTTGATTATGCTACTGTATGAACAGTTATTTTTCAATTGAAGTTGGTGTGAGATTTGTGAAATCAGGATGAAC TACCATATTTGTTGATATGTGAATTTATTTCACAGTTTGTAGAAATGTTCCATGCATGCATTGATTGAGTTATTCACTGT TTTATTGGCTTGTAAATAGGGTTCTTAACATTTCTGGTTTACTCTTTCAGGGTTTCAGGTTTGCCACTCTCTTGGTGGTG GAACTGGTTCCGGAATGGGAACACTTTTGATTTCCAAGATCAGAGAAGAGTACCCTGATCGAATGATGCTCACTTTCTCT GTGTTCCCATCGCCTAAGGTATCTGACACTGTTGTTGAGCCTTACAATGCCACACTCTCTGTGCACCAGCTTGTTGAGAA CGCTGATGAATGCATGGTGTTGGATAATGAAGCTCTTTATGATATCTGCTTCCGAACCCTTAAGCTCACTACTCCAAGCT GTATGTTCACATCAACTCATGTTTGCACTATTTCTATATTTGCTTGCATTGCTTTGTGATTAAAATCAACTAATTGGGTT TTTTGTTTTTGTTGTTTGGTTGCAGTTGGAGATTTGAACCATCTCATTTCAGCCACCATGAGTGGTGTGACATGCTGTCT TCGATTCCCTGGTCAACTCAATTCTGATCTGCGGAAGCTGGCCGTGAATCTCATTCCCTTCCCTCGTCTGCATTTCTTCA TGGTGGGATTTGCCCCACTCACATCACGTGGATCACAGCAGTACAGGGCCCTCACTGTGCCTGAGTTGACCCAACAAATG TGGGATGCCAAGAACATGATGTGCGCAGCTGATCCTCGACACGGTCGTTACTTGACAGCTTCTGCCATGTTCCGTGGGAA GATGAGCACCAAGGAGGTTGATGAGCAGATGATCAATGTCCAGAACAAGAATTCCTCCTACTTTGTCGAGTGGATCCCCA ACAATGTTAAGTCCACTGTCTGTGACATCCCTCCAACTGGTCTCAAAATGGCTTCCACCTTCATTGGCAACTCCACATCC ATTCAAGAGATGTTCCGGAGGGTGAGTGAGCAGTTCACAGCTATGTTCCGCAGGAAGGCTTTCTTGCATTGGTACACCGG AGAGGGTATGGATGAGATGGAGTTCACTGAGGCAGAGAGCAACATGAACGACCTTGTCTCGGAGTACCAGCAGTACCAGG ATGCAACTGCAGATGATGAGGGGTATGACTATGAAGATGAGGATGAAGTTCAGGAGGAGGATTCTTAG
CDS sequence (LotjaGi5g1v0300100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAACACTTTTGATTTCCAAGATCAGAGAAGAGTACCCTGATCGAATGATGCTCACTTTCTCTGTGTTCCCATCGCC TAAGGTATCTGACACTGTTGTTGAGCCTTACAATGCCACACTCTCTGTGCACCAGCTTGTTGAGAACGCTGATGAATGCA TGGTGTTGGATAATGAAGCTCTTTATGATATCTGCTTCCGAACCCTTAAGCTCACTACTCCAAGCTTTGGAGATTTGAAC CATCTCATTTCAGCCACCATGAGTGGTGTGACATGCTGTCTTCGATTCCCTGGTCAACTCAATTCTGATCTGCGGAAGCT GGCCGTGAATCTCATTCCCTTCCCTCGTCTGCATTTCTTCATGGTGGGATTTGCCCCACTCACATCACGTGGATCACAGC AGTACAGGGCCCTCACTGTGCCTGAGTTGACCCAACAAATGTGGGATGCCAAGAACATGATGTGCGCAGCTGATCCTCGA CACGGTCGTTACTTGACAGCTTCTGCCATGTTCCGTGGGAAGATGAGCACCAAGGAGGTTGATGAGCAGATGATCAATGT CCAGAACAAGAATTCCTCCTACTTTGTCGAGTGGATCCCCAACAATGTTAAGTCCACTGTCTGTGACATCCCTCCAACTG GTCTCAAAATGGCTTCCACCTTCATTGGCAACTCCACATCCATTCAAGAGATGTTCCGGAGGGTGAGTGAGCAGTTCACA GCTATGTTCCGCAGGAAGGCTTTCTTGCATTGGTACACCGGAGAGGGTATGGATGAGATGGAGTTCACTGAGGCAGAGAG CAACATGAACGACCTTGTCTCGGAGTACCAGCAGTACCAGGATGCAACTGCAGATGATGAGGGGTATGACTATGAAGATG AGGATGAAGTTCAGGAGGAGGATTCTTAG
Protein sequence (LotjaGi5g1v0300100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLN HLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPR HGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFT AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADDEGYDYEDEDEVQEEDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 97 | 97 | 3.79E-34 | ||
| CDD | 1 | 280 | 280 | 0.0 | – | |
| Gene3D | 1 | 116 | 116 | 4.7E-48 | ||
| PANTHER | 1 | 296 | 296 | 1.6E-212 | – | |
| PANTHER | 1 | 296 | 296 | 1.6E-212 | ||
| SMART | 1 | 98 | 98 | 0.0057 | ||
| Pfam | 2 | 65 | 64 | 2.0E-15 | ||
| PRINTS | 5 | 26 | 22 | 3.8E-44 | ||
| PRINTS | 6 | 18 | 13 | 3.3E-93 | ||
| PRINTS | 30 | 43 | 14 | 3.8E-44 | ||
| PRINTS | 44 | 64 | 21 | 3.8E-44 | ||
| PRINTS | 66 | 78 | 13 | 3.3E-93 | ||
| PRINTS | 84 | 93 | 10 | 3.3E-93 | ||
| SUPERFAMILY | 98 | 283 | 186 | 1.65E-81 | ||
| PRINTS | 99 | 112 | 14 | 3.3E-93 | ||
| SMART | 100 | 237 | 138 | 1.3E-42 | ||
| Pfam | 115 | 236 | 122 | 3.7E-41 | ||
| Gene3D | 117 | 227 | 111 | 2.0E-53 | ||
| PRINTS | 119 | 135 | 17 | 3.3E-93 | ||
| PRINTS | 165 | 183 | 19 | 3.3E-93 | ||
| PRINTS | 183 | 197 | 15 | 3.3E-93 | ||
| PRINTS | 201 | 224 | 24 | 3.3E-93 | ||
| PRINTS | 224 | 252 | 29 | 3.8E-44 | ||
| Gene3D | 228 | 300 | 73 | 1.7E-34 | ||
| PRINTS | 231 | 242 | 12 | 3.3E-93 | ||
| Coils | 262 | 282 | 21 | - | – | |
| PRINTS | 266 | 284 | 19 | 3.3E-93 | ||
| MobiDBLite | 276 | 302 | 27 | - | – | |
| MobiDBLite | 285 | 302 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | Structural constituent of cytoskeleton | The action of a molecule that contributes to the structural integrity of a cytoskeletal structure. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Cellular component | Microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. | ||
| Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. |
Expression pattern of LotjaGi5g1v0300100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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