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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0324900 |
| Transcript ID | LotjaGi5g1v0324900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT5G02860.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860; TrEMBL-Plants: tr|I1NG06|I1NG06_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0324900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64277479..64280311) extracted from Lotus japonicus Gifu genome v1.2.
TTATGAGTTAAATCTGGTTCTTCACAACCACCGTTTAGAGTGTCATTCCTCACTCTCAGCCACCACACTCCACCACCACC ATCATCAATCCATGGCAGGAAATCTCTCACACCCAAATTTCATCTCCAAACCTCCCTTTCCAAACCACCATTCCACCACC ACCACCGCCACCTCCGCCTCACCCTTACCCATCACACCCCTTCTCCAAGACCTCTTTCTAGACCTCAATTCCACTTCTTC TCCCCATTTCCACCCCACCACCCTTTCTCCGCCACCACATACCCCCGCCTCCGACCGCCGCCGTAGAACCTGGTCAAGCC ACCGCCTCTCCCCTCGAGGTCAGCGAATTCTCAATACACTAATCGACCCATCTTTCGATTTCAATCGCTTTGATGAAACT CTGCGCCTTTTGTTTTCTTCCTCTGGTGAATCATTGTCCTGGGACATCATGGGTGTGATCAAGGGTTTAGGGTTTTACAA CAAATGTGAACTCGCGTTGACTCTCTTTGACCGGGTTCGGAGTAGGGAGGATTGTGCTTCTCTTTTGAATGGTTCTGTGA TTGCTGTGATTATCAGCATTCTTAGTAAAACGGGTCGGGTTTCTTCTGCGTCTTCGTTGCTGCATGATTTGGAAACTGAT GGGGTTGATGTTGATGTGTATGCTTATACTTCTCTGATAACTGCTTATGCTAATGGTAAGAGGTATAAGGATGCATTGAA GGTGTTTGATAAAATGAAACAATTGGGGTGTAGACCTACTTTGATTACTTATAATGCCCTTTTGAATATTTATGGGAAAA TGGGTATGCCTTGGACTGAGATTATTGCTCTTGTTCAGGACATGAAGAGCCAAGGGCTTGCGCCGGATTTGTGCACTTTT AATACTCTTATAAGTTGTTGTCGGGCGGGGTCTTTGTATGAAGAAGCTCTTGAACTTTTTGAGGAGATCAAGTTAGCTGG ACTTAGACCAGACATGGTTACATACAATGCATTGTTGGATGTTTATGGGAAGTCGAGGCGGCCTAAGGAAGCCATGGAGG TTCTGAAACAGATGGAGAGTCGTGGCTTTCCTCCTAGCATCGTTACCTACACCTCGCTGATATCAGCTTATGTTAGAGAT GGTTTGCTAGAGGAAGCATTGGAGCTTAAAAACCAGATGGTGGAGAAACATATTAAACCTGATGTTTACACCTACACCAC GCTTTTGTCTGGATTTGTGAATGCCAAAAAAGATGAGCTTGCAATGAGAGTTTTTGAAGAAATGAGAACGGCAGGCTGCA AACCTAATATATGCACCTTCAATGCCCTTATCAAGATGTATGGAGACCGAGGGATGTTTGCGGAAATGGGGAAAGTTTTT AAGGAGATCAAGGCATGCCAGTGTTCCCCTGATATTGTTACTTGGAACACACTTTTGGCTGTATTTGGACAAAATGGATT GGACTCTGAAGTATCAGGAGTGTTCAAAGAAATGAAGAGAGCCGGGTTTGTGCCGGAGAGGGAGACATTCAACACTCTAA TAAGCGCATACAGCAGGTGTGGTTCCTTTGACCAAGCTAGGGCTGTTTATAAGAGAATGCTGGAGGCTGGAGTGACTCCA GATCTTTCAACTTATAATGCTGTTTTAGCAGCATTGGCTCGAGGAGGGCTTTGGGAACAATCTGAGAAAGTCCTTAGTGA AATGGAGAATGGTCGATGTAAACCTAATGAGGTAACATACTCTTCTTTGCTTCATGCTTATGCCAATGGCAAAGAGTTTG AAAAGATGAATGCTCTTGCAGAGGAGATATACTCTGGAAAAATTACAACACATGCTGTTCTTTTGAAGACCCTTGTTCTA GTAAATAGCAAGTTTGATTTCCTAGCAGAAGCAGAGCATGCATTTTTGGAGTTTAAGAAGAGAGGAATTCCGCATGACAT AACTACTTTGAATGCGATGCTTTCACTTTATGGCAGGAAGAAACTGGTAGCCAAAACTAACAAGATTTTGAAATTCATGT ATGAGAGTGGATTTACTCTGAGCTTGCCTGGCTATAATAGCTTGATGTATTTGCACAGCCGCACTCGAAACTTCCGAAAA TCAGAAATGATCTTGAGGGAAATTCTGGAGAAAGGTATAGAGCCTGATTTAATCTCATACAATATAGTTATTTATGCATA TTGCAGAAATGGCAAGATGACAGAGGCTAAAAGGATATTAAATGAAATGAAAGATCCTGCACCAGTTCCTGATGTTGTAA CTTACAATACATTTGTAGCAACTTATGCTGCAAACTCAATGTTTGGGGAGGCTATTGGTGTAGTTCAGTGTATGATCAAG CAAGGATGCAAGCCAGATCAGAATACATACAACTCCATAGTTGATTGGTACTGTAAGCTCCATTTGCGAGAGGAAGCATA CAATTTTGTTCACAACCTTTCCAGCCTTGATCTGCATGTATCTGAGGAGGAAAAAGGCAGATTACTAGAGCGCATAGCAG AGAAATGGATAAATTGATACATGTTTCTCTGGAATCTGTTCAATTTTGAACATCAATGTAATTTAGAATAGAATACAATT ATAAGAACAAATGAAGAATAAAAAAATTTGTGCAGAGTGCAGGCTCTTAGCGCAAAAGCCATTGTGATAAGTTCTAACTT CTGGTAGAATTTTGTATTGTTTTGTGTACTTCAAATAATATTTACGTATGTTCTTGTTTTCTGGATTGCCATTATGAGTA TTCTTAATAGCAATAGTGCTATTTGTCTAAAACTTCAGCATGCTAATTACTAGTACCAACTAAATGAAGATTTGCTTATC AAAAAAAGAAAACCAACTAAAAGAAGATAGCTA
CDS sequence (LotjaGi5g1v0324900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGGAAATCTCTCACACCCAAATTTCATCTCCAAACCTCCCTTTCCAAACCACCATTCCACCACCACCACCGCCAC CTCCGCCTCACCCTTACCCATCACACCCCTTCTCCAAGACCTCTTTCTAGACCTCAATTCCACTTCTTCTCCCCATTTCC ACCCCACCACCCTTTCTCCGCCACCACATACCCCCGCCTCCGACCGCCGCCGTAGAACCTGGTCAAGCCACCGCCTCTCC CCTCGAGGTCAGCGAATTCTCAATACACTAATCGACCCATCTTTCGATTTCAATCGCTTTGATGAAACTCTGCGCCTTTT GTTTTCTTCCTCTGGTGAATCATTGTCCTGGGACATCATGGGTGTGATCAAGGGTTTAGGGTTTTACAACAAATGTGAAC TCGCGTTGACTCTCTTTGACCGGGTTCGGAGTAGGGAGGATTGTGCTTCTCTTTTGAATGGTTCTGTGATTGCTGTGATT ATCAGCATTCTTAGTAAAACGGGTCGGGTTTCTTCTGCGTCTTCGTTGCTGCATGATTTGGAAACTGATGGGGTTGATGT TGATGTGTATGCTTATACTTCTCTGATAACTGCTTATGCTAATGGTAAGAGGTATAAGGATGCATTGAAGGTGTTTGATA AAATGAAACAATTGGGGTGTAGACCTACTTTGATTACTTATAATGCCCTTTTGAATATTTATGGGAAAATGGGTATGCCT TGGACTGAGATTATTGCTCTTGTTCAGGACATGAAGAGCCAAGGGCTTGCGCCGGATTTGTGCACTTTTAATACTCTTAT AAGTTGTTGTCGGGCGGGGTCTTTGTATGAAGAAGCTCTTGAACTTTTTGAGGAGATCAAGTTAGCTGGACTTAGACCAG ACATGGTTACATACAATGCATTGTTGGATGTTTATGGGAAGTCGAGGCGGCCTAAGGAAGCCATGGAGGTTCTGAAACAG ATGGAGAGTCGTGGCTTTCCTCCTAGCATCGTTACCTACACCTCGCTGATATCAGCTTATGTTAGAGATGGTTTGCTAGA GGAAGCATTGGAGCTTAAAAACCAGATGGTGGAGAAACATATTAAACCTGATGTTTACACCTACACCACGCTTTTGTCTG GATTTGTGAATGCCAAAAAAGATGAGCTTGCAATGAGAGTTTTTGAAGAAATGAGAACGGCAGGCTGCAAACCTAATATA TGCACCTTCAATGCCCTTATCAAGATGTATGGAGACCGAGGGATGTTTGCGGAAATGGGGAAAGTTTTTAAGGAGATCAA GGCATGCCAGTGTTCCCCTGATATTGTTACTTGGAACACACTTTTGGCTGTATTTGGACAAAATGGATTGGACTCTGAAG TATCAGGAGTGTTCAAAGAAATGAAGAGAGCCGGGTTTGTGCCGGAGAGGGAGACATTCAACACTCTAATAAGCGCATAC AGCAGGTGTGGTTCCTTTGACCAAGCTAGGGCTGTTTATAAGAGAATGCTGGAGGCTGGAGTGACTCCAGATCTTTCAAC TTATAATGCTGTTTTAGCAGCATTGGCTCGAGGAGGGCTTTGGGAACAATCTGAGAAAGTCCTTAGTGAAATGGAGAATG GTCGATGTAAACCTAATGAGGTAACATACTCTTCTTTGCTTCATGCTTATGCCAATGGCAAAGAGTTTGAAAAGATGAAT GCTCTTGCAGAGGAGATATACTCTGGAAAAATTACAACACATGCTGTTCTTTTGAAGACCCTTGTTCTAGTAAATAGCAA GTTTGATTTCCTAGCAGAAGCAGAGCATGCATTTTTGGAGTTTAAGAAGAGAGGAATTCCGCATGACATAACTACTTTGA ATGCGATGCTTTCACTTTATGGCAGGAAGAAACTGGTAGCCAAAACTAACAAGATTTTGAAATTCATGTATGAGAGTGGA TTTACTCTGAGCTTGCCTGGCTATAATAGCTTGATGTATTTGCACAGCCGCACTCGAAACTTCCGAAAATCAGAAATGAT CTTGAGGGAAATTCTGGAGAAAGGTATAGAGCCTGATTTAATCTCATACAATATAGTTATTTATGCATATTGCAGAAATG GCAAGATGACAGAGGCTAAAAGGATATTAAATGAAATGAAAGATCCTGCACCAGTTCCTGATGTTGTAACTTACAATACA TTTGTAGCAACTTATGCTGCAAACTCAATGTTTGGGGAGGCTATTGGTGTAGTTCAGTGTATGATCAAGCAAGGATGCAA GCCAGATCAGAATACATACAACTCCATAGTTGATTGGTACTGTAAGCTCCATTTGCGAGAGGAAGCATACAATTTTGTTC ACAACCTTTCCAGCCTTGATCTGCATGTATCTGAGGAGGAAAAAGGCAGATTACTAGAGCGCATAGCAGAGAAATGGATA AATTGA
Protein sequence (LotjaGi5g1v0324900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGNLSHPNFISKPPFPNHHSTTTTATSASPLPITPLLQDLFLDLNSTSSPHFHPTTLSPPPHTPASDRRRRTWSSHRLS PRGQRILNTLIDPSFDFNRFDETLRLLFSSSGESLSWDIMGVIKGLGFYNKCELALTLFDRVRSREDCASLLNGSVIAVI ISILSKTGRVSSASSLLHDLETDGVDVDVYAYTSLITAYANGKRYKDALKVFDKMKQLGCRPTLITYNALLNIYGKMGMP WTEIIALVQDMKSQGLAPDLCTFNTLISCCRAGSLYEEALELFEEIKLAGLRPDMVTYNALLDVYGKSRRPKEAMEVLKQ MESRGFPPSIVTYTSLISAYVRDGLLEEALELKNQMVEKHIKPDVYTYTTLLSGFVNAKKDELAMRVFEEMRTAGCKPNI CTFNALIKMYGDRGMFAEMGKVFKEIKACQCSPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKRAGFVPERETFNTLISAY SRCGSFDQARAVYKRMLEAGVTPDLSTYNAVLAALARGGLWEQSEKVLSEMENGRCKPNEVTYSSLLHAYANGKEFEKMN ALAEEIYSGKITTHAVLLKTLVLVNSKFDFLAEAEHAFLEFKKRGIPHDITTLNAMLSLYGRKKLVAKTNKILKFMYESG FTLSLPGYNSLMYLHSRTRNFRKSEMILREILEKGIEPDLISYNIVIYAYCRNGKMTEAKRILNEMKDPAPVPDVVTYNT FVATYAANSMFGEAIGVVQCMIKQGCKPDQNTYNSIVDWYCKLHLREEAYNFVHNLSSLDLHVSEEEKGRLLERIAEKWI N
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 32 | 32 | - | – | |
| MobiDBLite | 15 | 32 | 18 | - | – | |
| MobiDBLite | 52 | 78 | 27 | - | – | |
| PANTHER | 72 | 219 | 148 | 6.3E-209 | – | |
| PANTHER | 72 | 219 | 148 | 6.3E-209 | – | |
| Gene3D | 123 | 286 | 164 | 1.9E-33 | ||
| ProSiteProfiles | 153 | 187 | 35 | 7.147 | ||
| Pfam | 175 | 237 | 63 | 2.0E-22 | ||
| ProSiteProfiles | 188 | 222 | 35 | 13.143 | ||
| TIGRFAM | 190 | 223 | 34 | 1.8E-8 | ||
| SUPERFAMILY | 193 | 744 | 552 | 4.17E-6 | ||
| PANTHER | 215 | 299 | 85 | 6.3E-209 | – | |
| PANTHER | 215 | 299 | 85 | 6.3E-209 | – | |
| ProSiteProfiles | 223 | 258 | 36 | 10.918 | ||
| TIGRFAM | 225 | 259 | 35 | 1.2E-5 | ||
| Pfam | 255 | 286 | 32 | 1.1E-5 | ||
| ProSiteProfiles | 259 | 293 | 35 | 11.137 | ||
| TIGRFAM | 261 | 294 | 34 | 1.9E-6 | ||
| Gene3D | 287 | 356 | 70 | 1.1E-20 | ||
| Pfam | 293 | 339 | 47 | 1.2E-13 | ||
| ProSiteProfiles | 294 | 328 | 35 | 13.987 | ||
| PANTHER | 296 | 798 | 503 | 6.3E-209 | – | |
| TIGRFAM | 296 | 329 | 34 | 5.9E-10 | ||
| PANTHER | 296 | 798 | 503 | 6.3E-209 | – | |
| ProSiteProfiles | 329 | 363 | 35 | 12.573 | ||
| TIGRFAM | 331 | 365 | 35 | 2.8E-9 | ||
| Pfam | 352 | 413 | 62 | 3.7E-24 | ||
| Gene3D | 357 | 425 | 69 | 6.0E-21 | ||
| ProSiteProfiles | 364 | 398 | 35 | 12.726 | ||
| TIGRFAM | 366 | 400 | 35 | 4.1E-9 | ||
| ProSiteProfiles | 399 | 433 | 35 | 10.019 | ||
| TIGRFAM | 401 | 435 | 35 | 1.6E-5 | ||
| Gene3D | 426 | 589 | 164 | 1.3E-43 | ||
| ProSiteProfiles | 434 | 468 | 35 | 11.762 | ||
| TIGRFAM | 436 | 468 | 33 | 6.8E-6 | ||
| Pfam | 436 | 466 | 31 | 3.8E-6 | ||
| ProSiteProfiles | 469 | 503 | 35 | 13.055 | ||
| Pfam | 472 | 501 | 30 | 3.1E-7 | ||
| TIGRFAM | 472 | 504 | 33 | 1.1E-9 | ||
| Pfam | 503 | 552 | 50 | 2.6E-11 | ||
| ProSiteProfiles | 504 | 538 | 35 | 11.74 | ||
| TIGRFAM | 507 | 540 | 34 | 2.6E-6 | ||
| ProSiteProfiles | 539 | 573 | 35 | 7.958 | ||
| ProSiteProfiles | 609 | 643 | 35 | 8.627 | ||
| ProSiteProfiles | 644 | 678 | 35 | 9.284 | ||
| TIGRFAM | 648 | 679 | 32 | 6.5E-5 | ||
| Gene3D | 648 | 799 | 152 | 2.0E-33 | ||
| Pfam | 674 | 707 | 34 | 4.1E-12 | ||
| ProSiteProfiles | 679 | 713 | 35 | 12.09 | ||
| TIGRFAM | 681 | 707 | 27 | 9.3E-8 | ||
| Pfam | 713 | 762 | 50 | 6.1E-11 | ||
| ProSiteProfiles | 714 | 748 | 35 | 10.983 | ||
| TIGRFAM | 716 | 749 | 34 | 2.3E-5 | ||
| ProSiteProfiles | 749 | 783 | 35 | 8.013 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0324900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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