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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0328500 |
| Transcript ID | LotjaGi5g1v0328500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat receptor-like protein kinase family; TAIR: AT2G15320.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|Q9LY03|IRK_ARATH Probable LRR receptor-like serine/threonine-protein kinase IRK; TrEMBL-Plants: tr|C6ZS02|C6ZS02_SOYBN Leucine-rich repeat disease resistance protein; Found in the gene: LotjaGi5g1v0328500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64570144..64572290) extracted from Lotus japonicus Gifu genome v1.2.
ATGTACCTGAAAAAATATTGAATAAGTTCTCATTGACCCTTGTTGCCAATTTGTCACATTATATTTCATGATTAGATAAT TATAACCAAATTACATGAAAATTATTAGAATATGATTCTCATCATACAGAATACAGAACTGAGATTAGCAAAAAAAAAGA ATACAGAACTGAGATACACTTGTTACTTAGTGACAAGTGTGTACACTGACACTTATCACTCAGAACAATTGTAGTCAACA CTGTTGTCTTGACCCCATTTTCTTTTACTCGTTTTAAAGCTCCCACTATTCTCCTCCCTCCTCCAAGTGATATTTCCCTC CTTCCACTACCATCTGCACGAGCCTTTGTCACCTCACATCTGGTCCATCTACTGTACTCCCTCCTTTATTTTTATTCCTT CAAATACTATACCAACTACTCACCACAACATCTGCCATTCCCAACCGACAATGATGCAAACCAATACGGCAATACCACCT TCTGATTCTGAAGGATCACCAAAACAATATCATCCCATATATCTTTCCTCACATCTCCAAATCACACACCAAAAAAGCTC CAATATGCAAAACCTCATATTTCTCTGCCTCACTATTATTTTCCTTCCCCTGCTTCACTTTCACCATGTGCAAGCTCTCA CTTCAGCTTCAGATATTGCAGCACTCAAGGCTTTCAAGGCCTCAATCAAACCCTCTTCAATCGCACCCTGGTCATGCCTA GCATCATGGAACTTCACCATCGACCCTTGCTCACTCCCTCGCCGAACCCACTTCATCTGCGGCCTCACCTGCACCGCCAC CACCACCACCAACAACATCAACCAAATCACCCTCGACCCTGCAGGCTACTCTGGCTCACTCACCCCACTCATCTCTCAAC TCACCCAACTCGTCACACTAGACCTCGCCGAAAACTCCTTCTCCGGCCCAATCCCCTCTTCACTCTCTTCCCTCTCCAAC CTCAAAACCTTAACTCTCCGATCCAATTCCTTCTCTGGTTCAATCCCTCCCTCCATAACCACCCTCAAATCGCTATATTC TCTGGACTTTTCACACAATTCCCTATCTGGGTCTCTCCCAAACTCCATGAATTCCCTCATCAACCTCCGCAGAATCGATC TCAGCTTCAACAAATTAACCGGTTCGATCCCCAAATTACCACCCAACTTGCTAGAACTCGCTGTCAAGGCCAATTCATTA TCCGGGCCTCTCCAGAAAGCAACCTTCGAGGGGCTGAACCAGTTGGAAGTAGTGGAGCTCAGTGAGAACACACTCGCCGG AACAGTGGAACCGTGGTTCTTCCTCTTGCCATCGCTGCAGCAGGTGGATTTGTCAAACAACAGCTTCACCGGCGTTCAGA TCTCAAGACCCGCGCGTGGGGAAGGTAGCAACCTCGTGGCGGTGAACCTCGGATTTAACAGAATCCAAGGTTACGCGCCC GCGAATCTCGCCGCGTATCCTCAACTGTCGTCGCTGTCGATTCGTCACAACTCGCTACGTGGCGCGATCCCATTGGAGTA CGGTGGAATCAAGTCCATGAAGAGGTTGTTCCTGGACGGGAACTTCCTAGACGGGAAGCCGCCGGCCGGGTTGGTAGCCG CCGGCGCGGCGGTTACCGGCAGCTTGGGGGACAATTGTCTGCAGATTTGTCCAGTGTCTTCAAAGCTGTGCACGACCGCA CAGAAACCGAGCTCTGTTTGCAAGCAAGCCCACCGTGGAAGACCAACACCGTAGTCTTGTGTCGGTTAAAATATATATAC AATTTATTAATTAGTTATTATTAATAGATGAAAAGTCATCACTTTTCTATATATTTTAGTATTAGTTAGTTTGGTTATTT TGTAAACTATGCAGAGATAAGGAAATAAAGAAATATTTTATGCGATAAATTTTATTTTATTTTATTTTATGTCAAAATGA GAAAAATAAATATAAAGCTTTTTTATATTATTCTCCAGGAAAAATCTCGTATAAAAAATGCAGTTTGACATGATAGTGAT ATTCATATTATTAGGGTCGGCTCAACACTAAATGAGGTTTAAAGCAATTTTAAAATGAGTTTTTTTACCTAAAAGAGAAT TTAGTAAAAAAAATATTCGGGGGCCTTTTTGATTTAGTGAATAATTTATTTTGGAGCCTAAAATCCT
CDS sequence (LotjaGi5g1v0328500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCAAACCAATACGGCAATACCACCTTCTGATTCTGAAGGATCACCAAAACAATATCATCCCATATATCTTTCCTC ACATCTCCAAATCACACACCAAAAAAGCTCCAATATGCAAAACCTCATATTTCTCTGCCTCACTATTATTTTCCTTCCCC TGCTTCACTTTCACCATGTGCAAGCTCTCACTTCAGCTTCAGATATTGCAGCACTCAAGGCTTTCAAGGCCTCAATCAAA CCCTCTTCAATCGCACCCTGGTCATGCCTAGCATCATGGAACTTCACCATCGACCCTTGCTCACTCCCTCGCCGAACCCA CTTCATCTGCGGCCTCACCTGCACCGCCACCACCACCACCAACAACATCAACCAAATCACCCTCGACCCTGCAGGCTACT CTGGCTCACTCACCCCACTCATCTCTCAACTCACCCAACTCGTCACACTAGACCTCGCCGAAAACTCCTTCTCCGGCCCA ATCCCCTCTTCACTCTCTTCCCTCTCCAACCTCAAAACCTTAACTCTCCGATCCAATTCCTTCTCTGGTTCAATCCCTCC CTCCATAACCACCCTCAAATCGCTATATTCTCTGGACTTTTCACACAATTCCCTATCTGGGTCTCTCCCAAACTCCATGA ATTCCCTCATCAACCTCCGCAGAATCGATCTCAGCTTCAACAAATTAACCGGTTCGATCCCCAAATTACCACCCAACTTG CTAGAACTCGCTGTCAAGGCCAATTCATTATCCGGGCCTCTCCAGAAAGCAACCTTCGAGGGGCTGAACCAGTTGGAAGT AGTGGAGCTCAGTGAGAACACACTCGCCGGAACAGTGGAACCGTGGTTCTTCCTCTTGCCATCGCTGCAGCAGGTGGATT TGTCAAACAACAGCTTCACCGGCGTTCAGATCTCAAGACCCGCGCGTGGGGAAGGTAGCAACCTCGTGGCGGTGAACCTC GGATTTAACAGAATCCAAGGTTACGCGCCCGCGAATCTCGCCGCGTATCCTCAACTGTCGTCGCTGTCGATTCGTCACAA CTCGCTACGTGGCGCGATCCCATTGGAGTACGGTGGAATCAAGTCCATGAAGAGGTTGTTCCTGGACGGGAACTTCCTAG ACGGGAAGCCGCCGGCCGGGTTGGTAGCCGCCGGCGCGGCGGTTACCGGCAGCTTGGGGGACAATTGTCTGCAGATTTGT CCAGTGTCTTCAAAGCTGTGCACGACCGCACAGAAACCGAGCTCTGTTTGCAAGCAAGCCCACCGTGGAAGACCAACACC GTAG
Protein sequence (LotjaGi5g1v0328500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMQTNTAIPPSDSEGSPKQYHPIYLSSHLQITHQKSSNMQNLIFLCLTIIFLPLLHFHHVQALTSASDIAALKAFKASIK PSSIAPWSCLASWNFTIDPCSLPRRTHFICGLTCTATTTTNNINQITLDPAGYSGSLTPLISQLTQLVTLDLAENSFSGP IPSSLSSLSNLKTLTLRSNSFSGSIPPSITTLKSLYSLDFSHNSLSGSLPNSMNSLINLRRIDLSFNKLTGSIPKLPPNL LELAVKANSLSGPLQKATFEGLNQLEVVELSENTLAGTVEPWFFLLPSLQQVDLSNNSFTGVQISRPARGEGSNLVAVNL GFNRIQGYAPANLAAYPQLSSLSIRHNSLRGAIPLEYGGIKSMKRLFLDGNFLDGKPPAGLVAAGAAVTGSLGDNCLQIC PVSSKLCTTAQKPSSVCKQAHRGRPTP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 41 | 41 | - | – | |
| TMHMM | 41 | 60 | 20 | - | – | |
| Phobius | 42 | 60 | 19 | - | – | |
| PANTHER | 49 | 426 | 378 | 4.1E-150 | – | |
| PANTHER | 49 | 426 | 378 | 4.1E-150 | – | |
| Gene3D | 60 | 236 | 177 | 1.1E-40 | ||
| Phobius | 61 | 427 | 367 | - | – | |
| Pfam | 66 | 101 | 36 | 6.8E-4 | ||
| SUPERFAMILY | 67 | 378 | 312 | 8.39E-51 | – | |
| SMART | 144 | 168 | 25 | 140.0 | ||
| ProSiteProfiles | 146 | 169 | 24 | 4.971 | ||
| Pfam | 169 | 229 | 61 | 1.0E-6 | ||
| ProSiteProfiles | 170 | 192 | 23 | 5.741 | ||
| SMART | 192 | 215 | 24 | 190.0 | ||
| ProSiteProfiles | 194 | 216 | 23 | 6.203 | ||
| SMART | 216 | 243 | 28 | 17.0 | ||
| ProSiteProfiles | 218 | 240 | 23 | 7.088 | ||
| Gene3D | 237 | 411 | 175 | 3.1E-27 | ||
| Pfam | 238 | 298 | 61 | 1.1E-7 | ||
| SMART | 286 | 307 | 22 | 44.0 | ||
| ProSiteProfiles | 288 | 309 | 22 | 4.963 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0328500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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