Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi5g1v0330300 |
Transcript ID | LotjaGi5g1v0330300.4 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|V7BB20|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0330300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64744591..64747162) extracted from Lotus japonicus Gifu genome v1.2.
ACCATGTTAGGTTCATTGCCTATACTGCCTCTCCCGGCTCCTCCGCTCGATGGAAACCTCGGTCCGCTTCCCGAGTCTCA GGTGATCGAGGAGAGACCCTCCGACGAGGAGCAGAGACCGGCTGCACCAGCAGCAACAGTTGCCACACACACTAGAACCA TTGGAATAATTCATCCACCTCCGGACATTAGAACCATTGTTGATAAAACCTCACAGTTTGTGGCTAAAAATGGTCCGGAA TTCGAGAAGAGGATTGTTGCGAATAATGCAGGGAATGCCAAGTTTAATTTCCTTCACTCGTCGGATCCGTATCATGCTTA TTATCAACATCGCTTGGCTGAATTTCGTGCTCAGAATCAGTCTTCTACCCAGCAACCTGGTGACTTGGCTGGAGATTCGG ATGTTCCTGAATCAACCCCATCAGCACCAGCCCCTGATAGTAATGGTGTAGTAGAAGCAGCAGGAGAAAAGCCTGATATT TCTGCCCAGTTTAGACCAGTAAGGAAAGTGCTTGACCCGCCTGAGGCTGAGCAATACACGGTTAGGCTTCCTGAAGGAAT AACAGGGGAAGAGCTGGATATTATAAAGCTTACAGCGCAGTTTGTGGCTCGAAATGGGAAATCTTTTTTGACGGGATTGA CTAGTAGGGAAGTTAATAACCTTCCATTCCATTTCTTGAAGCCGACCCACAGCATGTTTACATTTTTTACTTCCCTTGCG GATGCGTATTCGAAGGTTTTGATGCCTCCAAAGGGTTTGACAGAGAAGCTTAGGAAGAGTGTCCCTGACATGACTACTGT CCTTGAAAGGTGTGTGAACAGGCTGGAATGGGAGCGTTCGCAGGAGCAAGCTAGGCAAAAGGCTGAGGATGAGATCGAGC AGGAAAGGATACAAATGGCTATGATTGATTGGCATGATTTTGTGGTGGTTGAAACAATAGACTTTGCTGACGACGAGGAT GAAGAATTACCTACTCCTATGACCCTTGAGGAGGTGATAAGGAGAAGCAAGGTGTCGTCAGCCATGGAAGAAGATATTGT TGAGCCTGGAAAGGAAATGGAAATGGATATGGATGAGGAAGAGGCCCAGTTAGTTGCAGAGGGCATGAGAGCTGCTAGTT TGGAAGACAAGGATGATGGGAAGAAGAACGAAATGAGGGTTACTGAAGACCCTGAACCACCAATGAGGATTGTGAGGAAC TGGAAGAGACCAGAGGACAGAGTTCCTGCAGAAAGAGATCCAACCAAGTTTGTTGTTTCTCCTATCACTGGTGAGCTCAT TCCTATTAGTGAAATGTCAGAACATATACGAATTTCTCTCATTGATCCTAAATACAAAGAACAAAAAGAAAGGATGTTTG CCAAAATTCGAGAAACAACTCTGGCTCAGGATGATGAAATCTCAAGAAACATTGTTGGACTTGCAAGGACTCGTCCTGAT ATCTTTGGTACAACGGAGGAAGAGGTTTCCAATGCTGTCAAGGCAGAAATTGAGAAGAAAAATGATGAGCAACCTAAGCA GGTTATATGGGATGGTCACACTGGAAGTATTGGCCGTACTGCAAACCAAGCCATGTCACAGAGTATTGGAAGTGAGGATC AAAATGATGCTTCTAACTATGAAGGCAAGAACCTTCCTGGTCCTGCTGCACCCCCTCCAAGGCCCGGCATGCCTTCAATT CGTCCTCTTCCGCCACCACCTGGACTAGCATTGAATCTTCCTCGTGTTCCTCCCAATGTCGTTCAGTATCAGCACAGTGG CGGCCTTCCAATGCCTCCTCCAAGACCACCAGCTATGATTCCATCTGTCCGCCCAGCTCCCCCTCCTCCAATGCAAATGA ATTCTGGACAGCAGTCTGTTATGGGTGGTCAACCACATCCGATGATGCCTCCATCAATTTCTATGAATAGCCAAGGAATG CACATGCCTCCACCACCACCTGGATCTCAGTTCACTCCTGTTCCACGGCCTCCTTTTGTTCCTATGTCTCATCCACCATC AATGATGCCTATGATGCATCCACCACCCTTGCCTCAAGGAATGCCACCACCCCCACCGCCTGAGGAAGCTCTTCCCCCAC TTCCAGAGGAACCAGAACCAAAGAGGCAAAAGCTTGATGATTCTTCTCTGATTCCAGAAGATCAATTTCTGGCTCAGCAT CCGGTATGGAGTTACTTAATTAACAATTATCTCTTAATTTTTCAAATTAAGTTATACATTGCATCATATTTACCAGCAGT GTTATACTGTTATTTATGTTCATCACTTCATCCTAATTTGAATTTTGTGGTCTTTCACTCAGGGACCTGTTCGCATCAGT ATATCTGTTCCTAATGTTGATGAAGGAAATCTCAAAGGACAAGTTCTGGAAATAACCTTGCAATCTCTGTCTGAAACTGT TGCCAGTCTGAAGGAAAAAATTGCTGGGGATATCCAGCTCCCTGCTAACAAGCAGAAATTGAGTGGAAAGCCAGGCTTTC TTAAGGATAATTTGTCACTTGCTCATTACAATGTCAGCGGAGGAGAAACACTTACCCTATCCTTAAGAGAGCGTGGTGGT AGAAAGAGATGA
CDS sequence (LotjaGi5g1v0330300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGGTTCATTGCCTATACTGCCTCTCCCGGCTCCTCCGCTCGATGGAAACCTCGGTCCGCTTCCCGAGTCTCAGGT GATCGAGGAGAGACCCTCCGACGAGGAGCAGAGACCGGCTGCACCAGCAGCAACAGTTGCCACACACACTAGAACCATTG GAATAATTCATCCACCTCCGGACATTAGAACCATTGTTGATAAAACCTCACAGTTTGTGGCTAAAAATGGTCCGGAATTC GAGAAGAGGATTGTTGCGAATAATGCAGGGAATGCCAAGTTTAATTTCCTTCACTCGTCGGATCCGTATCATGCTTATTA TCAACATCGCTTGGCTGAATTTCGTGCTCAGAATCAGTCTTCTACCCAGCAACCTGGTGACTTGGCTGGAGATTCGGATG TTCCTGAATCAACCCCATCAGCACCAGCCCCTGATAGTAATGGTGTAGTAGAAGCAGCAGGAGAAAAGCCTGATATTTCT GCCCAGTTTAGACCAGTAAGGAAAGTGCTTGACCCGCCTGAGGCTGAGCAATACACGGTTAGGCTTCCTGAAGGAATAAC AGGGGAAGAGCTGGATATTATAAAGCTTACAGCGCAGTTTGTGGCTCGAAATGGGAAATCTTTTTTGACGGGATTGACTA GTAGGGAAGTTAATAACCTTCCATTCCATTTCTTGAAGCCGACCCACAGCATGTTTACATTTTTTACTTCCCTTGCGGAT GCGTATTCGAAGGTTTTGATGCCTCCAAAGGGTTTGACAGAGAAGCTTAGGAAGAGTGTCCCTGACATGACTACTGTCCT TGAAAGGTGTGTGAACAGGCTGGAATGGGAGCGTTCGCAGGAGCAAGCTAGGCAAAAGGCTGAGGATGAGATCGAGCAGG AAAGGATACAAATGGCTATGATTGATTGGCATGATTTTGTGGTGGTTGAAACAATAGACTTTGCTGACGACGAGGATGAA GAATTACCTACTCCTATGACCCTTGAGGAGGTGATAAGGAGAAGCAAGGTGTCGTCAGCCATGGAAGAAGATATTGTTGA GCCTGGAAAGGAAATGGAAATGGATATGGATGAGGAAGAGGCCCAGTTAGTTGCAGAGGGCATGAGAGCTGCTAGTTTGG AAGACAAGGATGATGGGAAGAAGAACGAAATGAGGGTTACTGAAGACCCTGAACCACCAATGAGGATTGTGAGGAACTGG AAGAGACCAGAGGACAGAGTTCCTGCAGAAAGAGATCCAACCAAGTTTGTTGTTTCTCCTATCACTGGTGAGCTCATTCC TATTAGTGAAATGTCAGAACATATACGAATTTCTCTCATTGATCCTAAATACAAAGAACAAAAAGAAAGGATGTTTGCCA AAATTCGAGAAACAACTCTGGCTCAGGATGATGAAATCTCAAGAAACATTGTTGGACTTGCAAGGACTCGTCCTGATATC TTTGGTACAACGGAGGAAGAGGTTTCCAATGCTGTCAAGGCAGAAATTGAGAAGAAAAATGATGAGCAACCTAAGCAGGT TATATGGGATGGTCACACTGGAAGTATTGGCCGTACTGCAAACCAAGCCATGTCACAGAGTATTGGAAGTGAGGATCAAA ATGATGCTTCTAACTATGAAGGCAAGAACCTTCCTGGTCCTGCTGCACCCCCTCCAAGGCCCGGCATGCCTTCAATTCGT CCTCTTCCGCCACCACCTGGACTAGCATTGAATCTTCCTCGTGTTCCTCCCAATGTCGTTCAGTATCAGCACAGTGGCGG CCTTCCAATGCCTCCTCCAAGACCACCAGCTATGATTCCATCTGTCCGCCCAGCTCCCCCTCCTCCAATGCAAATGAATT CTGGACAGCAGTCTGTTATGGGTGGTCAACCACATCCGATGATGCCTCCATCAATTTCTATGAATAGCCAAGGAATGCAC ATGCCTCCACCACCACCTGGATCTCAGTTCACTCCTGTTCCACGGCCTCCTTTTGTTCCTATGTCTCATCCACCATCAAT GATGCCTATGATGCATCCACCACCCTTGCCTCAAGGAATGCCACCACCCCCACCGCCTGAGGAAGCTCTTCCCCCACTTC CAGAGGAACCAGAACCAAAGAGGCAAAAGCTTGATGATTCTTCTCTGATTCCAGAAGATCAATTTCTGGCTCAGCATCCG GGACCTGTTCGCATCAGTATATCTGTTCCTAATGTTGATGAAGGAAATCTCAAAGGACAAGTTCTGGAAATAACCTTGCA ATCTCTGTCTGAAACTGTTGCCAGTCTGAAGGAAAAAATTGCTGGGGATATCCAGCTCCCTGCTAACAAGCAGAAATTGA GTGGAAAGCCAGGCTTTCTTAAGGATAATTTGTCACTTGCTCATTACAATGTCAGCGGAGGAGAAACACTTACCCTATCC TTAAGAGAGCGTGGTGGTAGAAAGAGATGA
Protein sequence (LotjaGi5g1v0330300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGSLPILPLPAPPLDGNLGPLPESQVIEERPSDEEQRPAAPAATVATHTRTIGIIHPPPDIRTIVDKTSQFVAKNGPEF EKRIVANNAGNAKFNFLHSSDPYHAYYQHRLAEFRAQNQSSTQQPGDLAGDSDVPESTPSAPAPDSNGVVEAAGEKPDIS AQFRPVRKVLDPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREVNNLPFHFLKPTHSMFTFFTSLAD AYSKVLMPPKGLTEKLRKSVPDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVETIDFADDEDE ELPTPMTLEEVIRRSKVSSAMEEDIVEPGKEMEMDMDEEEAQLVAEGMRAASLEDKDDGKKNEMRVTEDPEPPMRIVRNW KRPEDRVPAERDPTKFVVSPITGELIPISEMSEHIRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARTRPDI FGTTEEEVSNAVKAEIEKKNDEQPKQVIWDGHTGSIGRTANQAMSQSIGSEDQNDASNYEGKNLPGPAAPPPRPGMPSIR PLPPPPGLALNLPRVPPNVVQYQHSGGLPMPPPRPPAMIPSVRPAPPPPMQMNSGQQSVMGGQPHPMMPPSISMNSQGMH MPPPPPGSQFTPVPRPPFVPMSHPPSMMPMMHPPPLPQGMPPPPPPEEALPPLPEEPEPKRQKLDDSSLIPEDQFLAQHP GPVRISISVPNVDEGNLKGQVLEITLQSLSETVASLKEKIAGDIQLPANKQKLSGKPGFLKDNLSLAHYNVSGGETLTLS LRERGGRKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 11 | 47 | 37 | - | – | |
PANTHER | 33 | 808 | 776 | 4.3E-226 | – | |
PANTHER | 33 | 808 | 776 | 4.3E-226 | – | |
SUPERFAMILY | 47 | 117 | 71 | 1.19E-22 | ||
Gene3D | 61 | 117 | 57 | 8.9E-25 | ||
SMART | 63 | 116 | 54 | 1.3E-25 | ||
Pfam | 63 | 114 | 52 | 4.6E-20 | ||
ProSiteProfiles | 65 | 107 | 43 | 18.206 | ||
MobiDBLite | 117 | 157 | 41 | - | – | |
SUPERFAMILY | 170 | 243 | 74 | 2.49E-19 | ||
Gene3D | 186 | 244 | 59 | 3.5E-21 | ||
SMART | 191 | 244 | 54 | 2.8E-19 | ||
Pfam | 191 | 242 | 52 | 9.0E-15 | ||
ProSiteProfiles | 193 | 235 | 43 | 15.996 | ||
Pfam | 262 | 475 | 214 | 3.0E-59 | ||
Coils | 277 | 297 | 21 | - | – | |
MobiDBLite | 523 | 560 | 38 | - | – | |
MobiDBLite | 523 | 540 | 18 | - | – | |
MobiDBLite | 545 | 560 | 16 | - | – | |
PRINTS | 549 | 565 | 17 | 3.0E-9 | – | |
PRINTS | 588 | 609 | 22 | 3.0E-9 | – | |
PRINTS | 644 | 661 | 18 | 3.0E-9 | – | |
MobiDBLite | 669 | 705 | 37 | - | – | |
MobiDBLite | 669 | 692 | 24 | - | – | |
PRINTS | 674 | 699 | 26 | 3.0E-9 | – | |
Gene3D | 698 | 808 | 111 | 1.3E-34 | – | |
SUPERFAMILY | 702 | 807 | 106 | 7.37E-22 | ||
CDD | 722 | 802 | 81 | 1.37414E-29 | – | |
SMART | 730 | 802 | 73 | 2.5E-10 | ||
Pfam | 738 | 804 | 67 | 7.4E-9 | ||
ProSiteProfiles | 750 | 806 | 57 | 14.97 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi5g1v0330300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…