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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0330300 |
| Transcript ID | LotjaGi5g1v0330300.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; TAIR: AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein; Swiss-Prot: sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3A subunit 1; TrEMBL-Plants: tr|V7BB20|V7BB20_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0330300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64744591..64747447) extracted from Lotus japonicus Gifu genome v1.2.
GATTCGATTCTCCATCACCCAGTCTGCGGAACAATCTGGTAAATCAGAAATTCTTCTTCTTCTTCTTCTTCTTCAATTTT TCTCTCTAGATTTGAACTCCATAGCTATGAATGAAACTTACTAAACCCTAATTTTATTGTTCTCTTAACAAATCAATTTG CATCTGAGCATTTGTGAAGTCTATCCATATTATCATCATCTACATCAATTAGGTTTTGTTTCGTTACAGAACTTGATGTT TTTCTCACTTTCATTTTCGTTGCAGGGTTTTAGGGATTTACAGTCACCATGTTAGGTTCATTGCCTATACTGCCTCTCCC GGCTCCTCCGCTCGATGGAAACCTCGGTCCGCTTCCCGAGTCTCAGGTGATCGAGGAGAGACCCTCCGACGAGGAGCAGA GACCGGCTGCACCAGCAGCAACAGTTGCCACACACACTAGAACCATTGGAATAATTCATCCACCTCCGGACATTAGAACC ATTGTTGATAAAACCTCACAGTTTGTGGCTAAAAATGGTCCGGAATTCGAGAAGAGGATTGTTGCGAATAATGCAGGGAA TGCCAAGTTTAATTTCCTTCACTCGTCGGATCCGTATCATGCTTATTATCAACATCGCTTGGCTGAATTTCGTGCTCAGA ATCAGTCTTCTACCCAGCAACCTGGTGACTTGGCTGGAGATTCGGATGTTCCTGAATCAACCCCATCAGCACCAGCCCCT GATAGTAATGGTGTAGTAGAAGCAGCAGGAGAAAAGCCTGATATTTCTGCCCAGTTTAGACCAGTAAGGAAAGTGCTTGA CCCGCCTGAGGCTGAGCAATACACGGTTAGGCTTCCTGAAGGAATAACAGGGGAAGAGCTGGATATTATAAAGCTTACAG CGCAGTTTGTGGCTCGAAATGGGAAATCTTTTTTGACGGGATTGACTAGTAGGGAAGTTAATAACCTTCCATTCCATTTC TTGAAGCCGACCCACAGCATGTTTACATTTTTTACTTCCCTTGCGGATGCGTATTCGAAGGTTTTGATGCCTCCAAAGGG TTTGACAGAGAAGCTTAGGAAGAGTGTCCCTGACATGACTACTGTCCTTGAAAGGTGTGTGAACAGGCTGGAATGGGAGC GTTCGCAGGAGCAAGCTAGGCAAAAGGCTGAGGATGAGATCGAGCAGGAAAGGATACAAATGGCTATGATTGATTGGCAT GATTTTGTGGTGGTTGAAACAATAGACTTTGCTGACGACGAGGATGAAGAATTACCTACTCCTATGACCCTTGAGGAGGT GATAAGGAGAAGCAAGGTGTCGTCAGCCATGGAAGAAGATATTGTTGAGCCTGGAAAGGAAATGGAAATGGATATGGATG AGGAAGAGGCCCAGTTAGTTGCAGAGGGCATGAGAGCTGCTAGTTTGGAAGACAAGGATGATGGGAAGAAGAACGAAATG AGGGTTACTGAAGACCCTGAACCACCAATGAGGATTGTGAGGAACTGGAAGAGACCAGAGGACAGAGTTCCTGCAGAAAG AGATCCAACCAAGTTTGTTGTTTCTCCTATCACTGGTGAGCTCATTCCTATTAGTGAAATGTCAGAACATATACGAATTT CTCTCATTGATCCTAAATACAAAGAACAAAAAGAAAGGATGTTTGCCAAAATTCGAGAAACAACTCTGGCTCAGGATGAT GAAATCTCAAGAAACATTGTTGGACTTGCAAGGACTCGTCCTGATATCTTTGGTACAACGGAGGAAGAGGTTTCCAATGC TGTCAAGGCAGAAATTGAGAAGAAAAATGATGAGCAACCTAAGCAGGTTATATGGGATGGTCACACTGGAAGTATTGGCC GTACTGCAAACCAAGCCATGTCACAGAGTATTGGAAGTGAGGATCAAAATGATGCTTCTAACTATGAAGGCAAGAACCTT CCTGGTCCTGCTGCACCCCCTCCAAGGCCCGGCATGCCTTCAATTCGTCCTCTTCCGCCACCACCTGGACTAGCATTGAA TCTTCCTCGTGTTCCTCCCAATGTCGTTCAGTATCAGCACAGTGGCGGCCTTCCAATGCCTCCTCCAAGACCACCAGCTA TGATTCCATCTGTCCGCCCAGCTCCCCCTCCTCCAATGCAAATGAATTCTGGACAGCAGTCTGTTATGGGTGGTCAACCA CATCCGATGATGCCTCCATCAATTTCTATGAATAGCCAAGGAATGCACATGCCTCCACCACCACCTGGATCTCAGTTCAC TCCTGTTCCACGGCCTCCTTTTGTTCCTATGTCTCATCCACCATCAATGATGCCTATGATGCATCCACCACCCTTGCCTC AAGGAATGCCACCACCCCCACCGCCTGAGGAAGCTCTTCCCCCACTTCCAGAGGAACCAGAACCAAAGAGGCAAAAGCTT GATGATTCTTCTCTGATTCCAGAAGATCAATTTCTGGCTCAGCATCCGGTATGGAGTTACTTAATTAACAATTATCTCTT AATTTTTCAAATTAAGTTATACATTGCATCATATTTACCAGCAGTGTTATACTGTTATTTATGTTCATCACTTCATCCTA ATTTGAATTTTGTGGTCTTTCACTCAGGGACCTGTTCGCATCAGTATATCTGTTCCTAATGTTGATGAAGGAAATCTCAA AGGACAAGTTCTGGAAATAACCTTGCAATCTCTGTCTGAAACTGTTGCCAGTCTGAAGGAAAAAATTGCTGGGGATATCC AGCTCCCTGCTAACAAGCAGAAATTGAGTGGAAAGCCAGGCTTTCTTAAGGATAATTTGTCACTTGCTCATTACAATGTC AGCGGAGGAGAAACACTTACCCTATCCTTAAGAGAGCGTGGTGGTAGAAAGAGATGA
CDS sequence (LotjaGi5g1v0330300.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGGTTCATTGCCTATACTGCCTCTCCCGGCTCCTCCGCTCGATGGAAACCTCGGTCCGCTTCCCGAGTCTCAGGT GATCGAGGAGAGACCCTCCGACGAGGAGCAGAGACCGGCTGCACCAGCAGCAACAGTTGCCACACACACTAGAACCATTG GAATAATTCATCCACCTCCGGACATTAGAACCATTGTTGATAAAACCTCACAGTTTGTGGCTAAAAATGGTCCGGAATTC GAGAAGAGGATTGTTGCGAATAATGCAGGGAATGCCAAGTTTAATTTCCTTCACTCGTCGGATCCGTATCATGCTTATTA TCAACATCGCTTGGCTGAATTTCGTGCTCAGAATCAGTCTTCTACCCAGCAACCTGGTGACTTGGCTGGAGATTCGGATG TTCCTGAATCAACCCCATCAGCACCAGCCCCTGATAGTAATGGTGTAGTAGAAGCAGCAGGAGAAAAGCCTGATATTTCT GCCCAGTTTAGACCAGTAAGGAAAGTGCTTGACCCGCCTGAGGCTGAGCAATACACGGTTAGGCTTCCTGAAGGAATAAC AGGGGAAGAGCTGGATATTATAAAGCTTACAGCGCAGTTTGTGGCTCGAAATGGGAAATCTTTTTTGACGGGATTGACTA GTAGGGAAGTTAATAACCTTCCATTCCATTTCTTGAAGCCGACCCACAGCATGTTTACATTTTTTACTTCCCTTGCGGAT GCGTATTCGAAGGTTTTGATGCCTCCAAAGGGTTTGACAGAGAAGCTTAGGAAGAGTGTCCCTGACATGACTACTGTCCT TGAAAGGTGTGTGAACAGGCTGGAATGGGAGCGTTCGCAGGAGCAAGCTAGGCAAAAGGCTGAGGATGAGATCGAGCAGG AAAGGATACAAATGGCTATGATTGATTGGCATGATTTTGTGGTGGTTGAAACAATAGACTTTGCTGACGACGAGGATGAA GAATTACCTACTCCTATGACCCTTGAGGAGGTGATAAGGAGAAGCAAGGTGTCGTCAGCCATGGAAGAAGATATTGTTGA GCCTGGAAAGGAAATGGAAATGGATATGGATGAGGAAGAGGCCCAGTTAGTTGCAGAGGGCATGAGAGCTGCTAGTTTGG AAGACAAGGATGATGGGAAGAAGAACGAAATGAGGGTTACTGAAGACCCTGAACCACCAATGAGGATTGTGAGGAACTGG AAGAGACCAGAGGACAGAGTTCCTGCAGAAAGAGATCCAACCAAGTTTGTTGTTTCTCCTATCACTGGTGAGCTCATTCC TATTAGTGAAATGTCAGAACATATACGAATTTCTCTCATTGATCCTAAATACAAAGAACAAAAAGAAAGGATGTTTGCCA AAATTCGAGAAACAACTCTGGCTCAGGATGATGAAATCTCAAGAAACATTGTTGGACTTGCAAGGACTCGTCCTGATATC TTTGGTACAACGGAGGAAGAGGTTTCCAATGCTGTCAAGGCAGAAATTGAGAAGAAAAATGATGAGCAACCTAAGCAGGT TATATGGGATGGTCACACTGGAAGTATTGGCCGTACTGCAAACCAAGCCATGTCACAGAGTATTGGAAGTGAGGATCAAA ATGATGCTTCTAACTATGAAGGCAAGAACCTTCCTGGTCCTGCTGCACCCCCTCCAAGGCCCGGCATGCCTTCAATTCGT CCTCTTCCGCCACCACCTGGACTAGCATTGAATCTTCCTCGTGTTCCTCCCAATGTCGTTCAGTATCAGCACAGTGGCGG CCTTCCAATGCCTCCTCCAAGACCACCAGCTATGATTCCATCTGTCCGCCCAGCTCCCCCTCCTCCAATGCAAATGAATT CTGGACAGCAGTCTGTTATGGGTGGTCAACCACATCCGATGATGCCTCCATCAATTTCTATGAATAGCCAAGGAATGCAC ATGCCTCCACCACCACCTGGATCTCAGTTCACTCCTGTTCCACGGCCTCCTTTTGTTCCTATGTCTCATCCACCATCAAT GATGCCTATGATGCATCCACCACCCTTGCCTCAAGGAATGCCACCACCCCCACCGCCTGAGGAAGCTCTTCCCCCACTTC CAGAGGAACCAGAACCAAAGAGGCAAAAGCTTGATGATTCTTCTCTGATTCCAGAAGATCAATTTCTGGCTCAGCATCCG GGACCTGTTCGCATCAGTATATCTGTTCCTAATGTTGATGAAGGAAATCTCAAAGGACAAGTTCTGGAAATAACCTTGCA ATCTCTGTCTGAAACTGTTGCCAGTCTGAAGGAAAAAATTGCTGGGGATATCCAGCTCCCTGCTAACAAGCAGAAATTGA GTGGAAAGCCAGGCTTTCTTAAGGATAATTTGTCACTTGCTCATTACAATGTCAGCGGAGGAGAAACACTTACCCTATCC TTAAGAGAGCGTGGTGGTAGAAAGAGATGA
Protein sequence (LotjaGi5g1v0330300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGSLPILPLPAPPLDGNLGPLPESQVIEERPSDEEQRPAAPAATVATHTRTIGIIHPPPDIRTIVDKTSQFVAKNGPEF EKRIVANNAGNAKFNFLHSSDPYHAYYQHRLAEFRAQNQSSTQQPGDLAGDSDVPESTPSAPAPDSNGVVEAAGEKPDIS AQFRPVRKVLDPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREVNNLPFHFLKPTHSMFTFFTSLAD AYSKVLMPPKGLTEKLRKSVPDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVETIDFADDEDE ELPTPMTLEEVIRRSKVSSAMEEDIVEPGKEMEMDMDEEEAQLVAEGMRAASLEDKDDGKKNEMRVTEDPEPPMRIVRNW KRPEDRVPAERDPTKFVVSPITGELIPISEMSEHIRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARTRPDI FGTTEEEVSNAVKAEIEKKNDEQPKQVIWDGHTGSIGRTANQAMSQSIGSEDQNDASNYEGKNLPGPAAPPPRPGMPSIR PLPPPPGLALNLPRVPPNVVQYQHSGGLPMPPPRPPAMIPSVRPAPPPPMQMNSGQQSVMGGQPHPMMPPSISMNSQGMH MPPPPPGSQFTPVPRPPFVPMSHPPSMMPMMHPPPLPQGMPPPPPPEEALPPLPEEPEPKRQKLDDSSLIPEDQFLAQHP GPVRISISVPNVDEGNLKGQVLEITLQSLSETVASLKEKIAGDIQLPANKQKLSGKPGFLKDNLSLAHYNVSGGETLTLS LRERGGRKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 11 | 47 | 37 | - | – | |
| PANTHER | 33 | 808 | 776 | 4.3E-226 | – | |
| PANTHER | 33 | 808 | 776 | 4.3E-226 | – | |
| SUPERFAMILY | 47 | 117 | 71 | 1.19E-22 | ||
| Gene3D | 61 | 117 | 57 | 8.9E-25 | ||
| SMART | 63 | 116 | 54 | 1.3E-25 | ||
| Pfam | 63 | 114 | 52 | 4.6E-20 | ||
| ProSiteProfiles | 65 | 107 | 43 | 18.206 | ||
| MobiDBLite | 117 | 157 | 41 | - | – | |
| SUPERFAMILY | 170 | 243 | 74 | 2.49E-19 | ||
| Gene3D | 186 | 244 | 59 | 3.5E-21 | ||
| SMART | 191 | 244 | 54 | 2.8E-19 | ||
| Pfam | 191 | 242 | 52 | 9.0E-15 | ||
| ProSiteProfiles | 193 | 235 | 43 | 15.996 | ||
| Pfam | 262 | 475 | 214 | 3.0E-59 | ||
| Coils | 277 | 297 | 21 | - | – | |
| MobiDBLite | 523 | 560 | 38 | - | – | |
| MobiDBLite | 523 | 540 | 18 | - | – | |
| MobiDBLite | 545 | 560 | 16 | - | – | |
| PRINTS | 549 | 565 | 17 | 3.0E-9 | – | |
| PRINTS | 588 | 609 | 22 | 3.0E-9 | – | |
| PRINTS | 644 | 661 | 18 | 3.0E-9 | – | |
| MobiDBLite | 669 | 705 | 37 | - | – | |
| MobiDBLite | 669 | 692 | 24 | - | – | |
| PRINTS | 674 | 699 | 26 | 3.0E-9 | – | |
| Gene3D | 698 | 808 | 111 | 1.3E-34 | – | |
| SUPERFAMILY | 702 | 807 | 106 | 7.37E-22 | ||
| CDD | 722 | 802 | 81 | 1.37414E-29 | – | |
| SMART | 730 | 802 | 73 | 2.5E-10 | ||
| Pfam | 738 | 804 | 67 | 7.4E-9 | ||
| ProSiteProfiles | 750 | 806 | 57 | 14.97 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi5g1v0330300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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