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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0353500 |
| Transcript ID | LotjaGi5g1v0353500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT5G64920.1 COP1-interacting protein 8; Swiss-Prot: sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8; TrEMBL-Plants: tr|V7BE55|V7BE55_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0353500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66916545..66919550) extracted from Lotus japonicus Gifu genome v1.2.
TGAAGGAGCAGATAAGTTTGATTTTTTTTCCTAATTATTTACTGTAATTGTCACAAATCACATATATACATCTTTCTTTT TCTATTTGTTTATTGGTTCATATCCCATATATACATATGAACCGTTAAATAAGACCCACCAATTATAATTTTAAAAAAAA TTGATGAAAATGAGAAAGATACCTTGCCAATATTAATTAATATAATAATAATAATAATTTTATTCTATTATTACAAGACT TGCATATTGTGTATCCCACCACAAACCCAAGCGAACAACAACAACCACTCTTCTCCCCTTTCCTTCCATCTCCGCCGTAC CACCATGTCGGAAGCACCGTCTCAGCCACCGGCTCCGTCAACGGAGACGCCGCCGTACTGGTGCTACCACTGCGAGAAGC GCGTCTCCATCGAAACACTCCCCAACCTCCCCGACGTCATCTGCGGCGAGTGCAAGAACGGATTCGTGGAATCCGTTCCC GCACCCTCTCGACGCTCTCCCTCTCCTCCGCCTGACTTCGGCAACCACTTCCTCCAAGTCCTCCGCCTTATCGCTCAGTC GGCGCGTGAAGACAACGACAACGAAAACGACGACGATGCTTCTCCTCCGCCGCCTCCAAACCGTTCGCCGGAGAATGATT TCCTCAGGATCCAGCTCGGCGGCTGGGACAACGACGAGGATGAAGACGAAGACGAGGGAGACAACGACGGCGAGGAGCAC GAAGGCGCTGTGGAGGAGCAGGTGGATCGATCCGGCAACGAGGAAGATGAAGATCTGAGGCGGAGGAGGCGCGAGCTGCT GCGGCTTCGAATTAGGGATTTGGCGACCCGAACCCGAAGCATGCGGAACCGGATCTTGGATTGGGCTGACATTCTGATGG GAATGGAAGACAACTCCATAGAGTTTCGCCTCCAGGTACCGGAATCGGACCGGTACGTCGGGAACCCGGAGGATTACGTG GACGCGACGGAGTACGAGGCGTTGATGCAGATACTGGCGGAGAGCGACGGAGGTGGGAGGAAGGGAGCTCCGCCGGCGTC GAAGGCGGCGGTGGAAGCTCTGCCGACGGTGAAGATCATGTCGGAGAGTGATACTGTGGCGTGTGCTATTTGTAAGGACT TGATGGGTGTTGGAGAATCAGCTAAGAGGTTACCGTGTGGGCATCAGTACCATGGAGATTGCATTGTTCCATGGCTGAGT TCTAGAAATTCTTGCCCTGTTTGCAGGTTTCAGCTTCCAACGGATGACAAGGAGTTTGAGGAAGAGAGAGCTTCGGGTTC CGGTTCGGGTCGGGGTGGAGCTGCCACTACTTGATTGAGTCCCAATAACTTGGTATGTTCTGTAATTGTTGTAATATATT TGTTGTTTCTATCTTCTGTTATGGAACTATTAGTGGATTTTTATCGAGTTTGCTCCATGTTATTTATTCGAAGCTTTTGC GTAGTTGGCTTCTTAGCTCTTAGATGCTAAGATACTTGTATATAGCATTTGGATCAATGTGATCACGCTTCTTACCTCAC AATGGGATTTGATGTTTCTTCCCAAATGTTATTTGGTTGTGGATATTTGTTTTGTATTTGATTGCTGGATTCACTCACAC ACACACACTGTTTTATCTGTGGCATAATCCTGTAATTTTTGTCCTGATTCTTTATATTCGGATTGAGTCATTTGCGTGTC TTGTAAGCATCTGATTTCGTGTTGGTTACTGCTCTAATAGCTAGAATTAGAATGTTAAGTTGAAACATGTCTGGTACAAG ATTCTTGAGGGGCCTTCAAAGAGGAAGAACAACAAAGCACGGCCCGTAATATGATATGTACTTGTGTCAGTTAAGGTGTT AAGATGAGAGAGCAGAGTCTGGAATTTGTGTTTCCGGAGTACTTTTCCTTCTTTATTACATGCAGTGGATCTCTGAAGGT AGTGCTTCTATTTAATTAAGCAACATTTGAGAATTTTCTCGTTTTTTAATGAGAAGCCTCACCTGTGGCTGTAAGGACTC GTAGGCTGGTAGAGTTCTGACTAAGCATTCTAGATAATCTCTCGGCATTTTGTTAAGGGAGAGAGGATTTTGGTAATAGT TCTACTAGATGTTCCTTTCTGTTTCTCAACAGCGCTTCAATAGATTCTGATTTGATCCTTCAGTTCTCTATTACCTAGTT AGTTTGCCATCTTTTAAGTGTGACAATGACACCATATGCATAGCTTATCTTCCATTCTGCAAACAGTTTGTCTAAATGTT CCTCTGATGAATGCTCCGTAAGTGTAAGCCGAGGTTATGATCTATACCCTTGATTCTATTGCAATTCCATTGAGGGAGTC CAAGAAGTCATGGATTATATTGATCCTTTCACCACATTTCAACATTCTGTTCTCCATGACAGATAGTGTGAACGTGACAA AAGGTCGGGGTTGCCCTCTTTTCTGTCATCAAAATGATCTTCAATGGAAATAAATACCTGCATTTGATCAGTTAGGTTCA GATTATCAGCTTTGCCAAAATTAGTTCATATCTTTATCAAACTGTTTTAGCTGATTATAGGTAGAATTTCTGCCTGGAAT GCTTTGCGGGTCTTTGTTAGCTGATTGGAGTGTTGAAGGTTCTGAGAATGGCTATATCTTTATCATTGTTATGATAAGTT GTATTGTTATTGATTGGCAAAATAACCTAGCAGCTCATGTAGCAGCTACCCTAGATTGTATGTGCAATGCAAGGATTAGA TTTTTGAATTGTCATGTCTACAAATTACACTTCGTAGCTCTCTAAAGATTTTTACTGAATTCAATATTTCAATTAAAATT TGTGCTAGTTTATGAAAAACATGTCTTGTTTTATTTTTTTAAGTAAAAACATCTCTTGTTTTTTTTTTGAAACTCAAAAA AAAAAAAAATCTCTTGTTAATCATACAAAAATAGCAATGAAAAACTTAGCCTACCCAAAGTTCCTTTACGTTCCACATGT TTCGACTGGATTTTTATGCAGAAGAAACTTTCAATTTAGGTTTAAC
CDS sequence (LotjaGi5g1v0353500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGAAGCACCGTCTCAGCCACCGGCTCCGTCAACGGAGACGCCGCCGTACTGGTGCTACCACTGCGAGAAGCGCGT CTCCATCGAAACACTCCCCAACCTCCCCGACGTCATCTGCGGCGAGTGCAAGAACGGATTCGTGGAATCCGTTCCCGCAC CCTCTCGACGCTCTCCCTCTCCTCCGCCTGACTTCGGCAACCACTTCCTCCAAGTCCTCCGCCTTATCGCTCAGTCGGCG CGTGAAGACAACGACAACGAAAACGACGACGATGCTTCTCCTCCGCCGCCTCCAAACCGTTCGCCGGAGAATGATTTCCT CAGGATCCAGCTCGGCGGCTGGGACAACGACGAGGATGAAGACGAAGACGAGGGAGACAACGACGGCGAGGAGCACGAAG GCGCTGTGGAGGAGCAGGTGGATCGATCCGGCAACGAGGAAGATGAAGATCTGAGGCGGAGGAGGCGCGAGCTGCTGCGG CTTCGAATTAGGGATTTGGCGACCCGAACCCGAAGCATGCGGAACCGGATCTTGGATTGGGCTGACATTCTGATGGGAAT GGAAGACAACTCCATAGAGTTTCGCCTCCAGGTACCGGAATCGGACCGGTACGTCGGGAACCCGGAGGATTACGTGGACG CGACGGAGTACGAGGCGTTGATGCAGATACTGGCGGAGAGCGACGGAGGTGGGAGGAAGGGAGCTCCGCCGGCGTCGAAG GCGGCGGTGGAAGCTCTGCCGACGGTGAAGATCATGTCGGAGAGTGATACTGTGGCGTGTGCTATTTGTAAGGACTTGAT GGGTGTTGGAGAATCAGCTAAGAGGTTACCGTGTGGGCATCAGTACCATGGAGATTGCATTGTTCCATGGCTGAGTTCTA GAAATTCTTGCCCTGTTTGCAGGTTTCAGCTTCCAACGGATGACAAGGAGTTTGAGGAAGAGAGAGCTTCGGGTTCCGGT TCGGGTCGGGGTGGAGCTGCCACTACTTGA
Protein sequence (LotjaGi5g1v0353500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSEAPSQPPAPSTETPPYWCYHCEKRVSIETLPNLPDVICGECKNGFVESVPAPSRRSPSPPPDFGNHFLQVLRLIAQSA REDNDNENDDDASPPPPPNRSPENDFLRIQLGGWDNDEDEDEDEGDNDGEEHEGAVEEQVDRSGNEEDEDLRRRRRELLR LRIRDLATRTRSMRNRILDWADILMGMEDNSIEFRLQVPESDRYVGNPEDYVDATEYEALMQILAESDGGGRKGAPPASK AAVEALPTVKIMSESDTVACAICKDLMGVGESAKRLPCGHQYHGDCIVPWLSSRNSCPVCRFQLPTDDKEFEEERASGSG SGRGGAATT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 17 | 50 | 34 | 9.6E-10 | ||
| PANTHER | 48 | 316 | 269 | 6.8E-116 | – | |
| PANTHER | 48 | 316 | 269 | 6.8E-116 | – | |
| MobiDBLite | 82 | 150 | 69 | - | – | |
| MobiDBLite | 115 | 134 | 20 | - | – | |
| MobiDBLite | 135 | 150 | 16 | - | – | |
| Gene3D | 227 | 307 | 81 | 2.8E-19 | ||
| SUPERFAMILY | 255 | 307 | 53 | 1.26E-19 | – | |
| Pfam | 260 | 301 | 42 | 4.1E-12 | ||
| ProSiteProfiles | 260 | 301 | 42 | 12.297 | ||
| SMART | 260 | 300 | 41 | 9.1E-9 | ||
| MobiDBLite | 310 | 329 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin protein ligase activity | Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. |
Expression pattern of LotjaGi5g1v0353500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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