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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0354700 |
| Transcript ID | LotjaGi5g1v0354700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat receptor protein kinase family protein; TAIR: AT5G23400.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180; TrEMBL-Plants: tr|V7BAY3|V7BAY3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0354700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67027851..67029647) extracted from Lotus japonicus Gifu genome v1.2.
ATGCATTTTTTCACATGGGTTTTCAACCTTGTTCTGATATTTTCATTCCTGAGACAGTTCTCAGAAAGTGTAACAGTAGC AGCACTGTCTCCTTCCCCAATCTGTTCAGAAGAAGACAGAGCTTCTCTTCTGAGCTTCAAAGCAAGCATTTTCAAGGACA CAACAGAGACTCTTTCTTCATGGACAAGCAGGGATTGCTGTGATGGAGGCTGGGAAGGAGTTCAGTGCAATCCATCCACA GGTAGAGTCAATGTGTTGCAGATACAGAGGCCTGATAGAGACAGTGCCAGTTATATGAAAGGCTCTCTTTCTCCCTCACT AGGAAATTTGCATTTCTTGGAGGTATTGGTGATAAGTGGGATGAAGCACATTACAGGACCAATTCCTACTAGCCTTTCAA ATTTAACCCACCTCACACAGCTAGTTCTGGAAGACAATTCCCTTGGAGGGTGCATTCCTCCAAATTTAGGCCATTTACCT TTGCTGCAGACCCTTATACTGAGTGGGAACCATCTCAAAGGCCAGATCCCTCCAACAATAGGGAGCCTCAGAAACCTTAT CCAAGTTAATTTAGCAAGAAATTTTCTGACAGGTCCTGTCCCCCTCAGTTTCAAAACCCTTGGAAGTTTGCAGTACCTTG ATCTCAGCTACAACTTATTATCAGGGTCTATCCCAGAGTTTGTTGGAGAGTTCCAAAATCTGACCTTTATAGACCTTTCC TATAACCTTCTAACAGGAAAAATTCCAATTTCCTTGTTCAGCCTTGTCAATCTTTTGGACTTGTCCTTGAGCTATAACAA CCTCACAGGGAACATCCCAGATCAGATTGGAAGTCTTAAATCCCTAACAAGTCTTCAACTCAGTGGAAATAAACTCTCAG GGCATATTCCACTGTCCATATCAGGATTACAGAACCTTTGGTACTTTAATGTATCAAGAAATGGTCTCTCAGGTCCCTTA CCTGCTATTCCTTTCAAGGGTATCCCTGCCCTTTTGTCCATAGACCTGTCTTACAATAATCTCAGCCTGGGAAGTGTCCC TGACTGGATTAGAAGCAAGCAACTCAAAGATGTTCATCTAGCTGGGTGTGAATTGAAGGGAGATCTTCCTCACTTCATCA GGGCTCACTCTTTGAGCTCCATTGACCTATCAGATAACTGCCTAGTTGGTGGCATTTCTAGTTTCTTCACAAACATGTCC AGCTTGCAGAAGCTCAAGCTCTCAAACAACCAGTTGAGGTTTGACATTTCTCAAATAAAGTTGCCACCAGAGTTGTCTTT CTTAGACTTGCATGCAAATCTTCTCCAGGGTTCGCTGTCAGCAATCATAAATAACAGGACAAGCAGCTCATTGGAGGTCA TAGATGTATCAAACAATTTCATTTCAGGTCATTTTCCAGAATTTGCAGAAGGCTCAAGCTTGAAGGTGCTGAACTTGGGA AGCAACAACATATCAGGTCCAATCCCAGTTTCTATTTCAAATTTGATAGACCTTGAGAGATTGGACATATCAAGAAATCA CATATTGGGAGCAATTCCTTCAAGTCTAGGTCAGTTGCTGGAGCTGCAATGGCTTGATGTATCCATAAACAGCCTAGCAG GATCAATTCCTAGTAGCTTGTCACAGATAACTAATCTGAAGCATGCAAGCTTCAGGGCAAACAGGCTTTGTGGAGAAATA CCACAAACAAGACCACTAAACATCTTTCCAGCAGCTGCTTACGCCCACAACTTGTGCTTATGTGGTAAACCTTTGCAGCC ATGCAAGGGATAGAAACTAGGGGAGATAGGTCAGTGA
CDS sequence (LotjaGi5g1v0354700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATTTTTTCACATGGGTTTTCAACCTTGTTCTGATATTTTCATTCCTGAGACAGTTCTCAGAAAGTGTAACAGTAGC AGCACTGTCTCCTTCCCCAATCTGTTCAGAAGAAGACAGAGCTTCTCTTCTGAGCTTCAAAGCAAGCATTTTCAAGGACA CAACAGAGACTCTTTCTTCATGGACAAGCAGGGATTGCTGTGATGGAGGCTGGGAAGGAGTTCAGTGCAATCCATCCACA GGTAGAGTCAATGTGTTGCAGATACAGAGGCCTGATAGAGACAGTGCCAGTTATATGAAAGGCTCTCTTTCTCCCTCACT AGGAAATTTGCATTTCTTGGAGACCCTTATACTGAGTGGGAACCATCTCAAAGGCCAGATCCCTCCAACAATAGGGAGCC TCAGAAACCTTATCCAAGTTAATTTAGCAAGAAATTTTCTGACAGGTCCTGTCCCCCTCAGTTTCAAAACCCTTGGAAGT TTGCAGTACCTTGATCTCAGCTACAACTTATTATCAGGGTCTATCCCAGAGTTTGTTGGAGAGTTCCAAAATCTGACCTT TATAGACCTTTCCTATAACCTTCTAACAGGAAAAATTCCAATTTCCTTGTTCAGCCTTGTCAATCTTTTGGACTTGTCCT TGAGCTATAACAACCTCACAGGGAACATCCCAGATCAGATTGGAAGTCTTAAATCCCTAACAAGTCTTCAACTCAGTGGA AATAAACTCTCAGGGCATATTCCACTGTCCATATCAGGATTACAGAACCTTTGGTACTTTAATGTATCAAGAAATGGTCT CTCAGGTCCCTTACCTGCTATTCCTTTCAAGGGTATCCCTGCCCTTTTGTCCATAGACCTGTCTTACAATAATCTCAGCC TGGGAAGTGTCCCTGACTGGATTAGAAGCAAGCAACTCAAAGATGTTCATCTAGCTGGGTGTGAATTGAAGGGAGATCTT CCTCACTTCATCAGGGCTCACTCTTTGAGCTCCATTGACCTATCAGATAACTGCCTAGTTGGTGGCATTTCTAGTTTCTT CACAAACATGTCCAGCTTGCAGAAGCTCAAGCTCTCAAACAACCAGTTGAGGTTTGACATTTCTCAAATAAAGTTGCCAC CAGAGTTGTCTTTCTTAGACTTGCATGCAAATCTTCTCCAGGGTTCGCTGTCAGCAATCATAAATAACAGGACAAGCAGC TCATTGGAGGTCATAGATGTATCAAACAATTTCATTTCAGGTCATTTTCCAGAATTTGCAGAAGGCTCAAGCTTGAAGGT GCTGAACTTGGGAAGCAACAACATATCAGGTCCAATCCCAGTTTCTATTTCAAATTTGATAGACCTTGAGAGATTGGACA TATCAAGAAATCACATATTGGGAGCAATTCCTTCAAGTCTAGGTCAGTTGCTGGAGCTGCAATGGCTTGATGTATCCATA AACAGCCTAGCAGGATCAATTCCTAGTAGCTTGTCACAGATAACTAATCTGAAGCATGCAAGCTTCAGGGCAAACAGGCT TTGTGGAGAAATACCACAAACAAGACCACTAAACATCTTTCCAGCAGCTGCTTACGCCCACAACTTGTGCTTATGTGGTA AACCTTTGCAGCCATGCAAGGGATAG
Protein sequence (LotjaGi5g1v0354700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHFFTWVFNLVLIFSFLRQFSESVTVAALSPSPICSEEDRASLLSFKASIFKDTTETLSSWTSRDCCDGGWEGVQCNPST GRVNVLQIQRPDRDSASYMKGSLSPSLGNLHFLETLILSGNHLKGQIPPTIGSLRNLIQVNLARNFLTGPVPLSFKTLGS LQYLDLSYNLLSGSIPEFVGEFQNLTFIDLSYNLLTGKIPISLFSLVNLLDLSLSYNNLTGNIPDQIGSLKSLTSLQLSG NKLSGHIPLSISGLQNLWYFNVSRNGLSGPLPAIPFKGIPALLSIDLSYNNLSLGSVPDWIRSKQLKDVHLAGCELKGDL PHFIRAHSLSSIDLSDNCLVGGISSFFTNMSSLQKLKLSNNQLRFDISQIKLPPELSFLDLHANLLQGSLSAIINNRTSS SLEVIDVSNNFISGHFPEFAEGSSLKVLNLGSNNISGPIPVSISNLIDLERLDISRNHILGAIPSSLGQLLELQWLDVSI NSLAGSIPSSLSQITNLKHASFRANRLCGEIPQTRPLNIFPAAAYAHNLCLCGKPLQPCKG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 28 | 11 | - | – | |
| PANTHER | 26 | 89 | 64 | 8.8E-161 | – | |
| PANTHER | 26 | 89 | 64 | 8.8E-161 | – | |
| Phobius | 29 | 541 | 513 | - | – | |
| Gene3D | 31 | 202 | 172 | 8.8E-48 | ||
| Pfam | 37 | 77 | 41 | 1.9E-9 | ||
| SUPERFAMILY | 48 | 391 | 344 | 1.63E-57 | – | |
| PANTHER | 99 | 259 | 161 | 8.8E-161 | – | |
| PANTHER | 99 | 259 | 161 | 8.8E-161 | – | |
| SMART | 110 | 134 | 25 | 17.0 | ||
| Pfam | 113 | 171 | 59 | 1.2E-7 | ||
| SMART | 158 | 182 | 25 | 16.0 | ||
| PRINTS | 161 | 174 | 14 | 5.3E-5 | – | |
| Gene3D | 205 | 275 | 71 | 6.6E-18 | ||
| SMART | 206 | 229 | 24 | 180.0 | ||
| Pfam | 209 | 267 | 59 | 2.5E-6 | ||
| PRINTS | 230 | 243 | 14 | 5.3E-5 | – | |
| SMART | 230 | 254 | 25 | 31.0 | ||
| Gene3D | 276 | 541 | 266 | 1.6E-62 | ||
| PANTHER | 326 | 541 | 216 | 8.8E-161 | – | |
| PANTHER | 326 | 541 | 216 | 8.8E-161 | – | |
| SMART | 350 | 379 | 30 | 75.0 | ||
| SUPERFAMILY | 399 | 514 | 116 | 4.42E-25 | – | |
| Pfam | 400 | 459 | 60 | 8.7E-9 | ||
| SMART | 446 | 470 | 25 | 58.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0354700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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