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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0354700 |
| Transcript ID | LotjaGi5g1v0354700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat receptor-like protein kinase family protein; TAIR: AT5G23400.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1; TrEMBL-Plants: tr|A0A072VR32|A0A072VR32_MEDTR LRR receptor-like kinase; Found in the gene: LotjaGi5g1v0354700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67027851..67029647) extracted from Lotus japonicus Gifu genome v1.2.
ATGCATTTTTTCACATGGGTTTTCAACCTTGTTCTGATATTTTCATTCCTGAGACAGTTCTCAGAAAGTGTAACAGTAGC AGCACTGTCTCCTTCCCCAATCTGTTCAGAAGAAGACAGAGCTTCTCTTCTGAGCTTCAAAGCAAGCATTTTCAAGGACA CAACAGAGACTCTTTCTTCATGGACAAGCAGGGATTGCTGTGATGGAGGCTGGGAAGGAGTTCAGTGCAATCCATCCACA GGTAGAGTCAATGTGTTGCAGATACAGAGGCCTGATAGAGACAGTGCCAGTTATATGAAAGGCTCTCTTTCTCCCTCACT AGGAAATTTGCATTTCTTGGAGGTATTGGTGATAAGTGGGATGAAGCACATTACAGGACCAATTCCTACTAGCCTTTCAA ATTTAACCCACCTCACACAGCTAGTTCTGGAAGACAATTCCCTTGGAGGGTGCATTCCTCCAAATTTAGGCCATTTACCT TTGCTGCAGACCCTTATACTGAGTGGGAACCATCTCAAAGGCCAGATCCCTCCAACAATAGGGAGCCTCAGAAACCTTAT CCAAGTTAATTTAGCAAGAAATTTTCTGACAGGTCCTGTCCCCCTCAGTTTCAAAACCCTTGGAAGTTTGCAGTACCTTG ATCTCAGCTACAACTTATTATCAGGGTCTATCCCAGAGTTTGTTGGAGAGTTCCAAAATCTGACCTTTATAGACCTTTCC TATAACCTTCTAACAGGAAAAATTCCAATTTCCTTGTTCAGCCTTGTCAATCTTTTGGACTTGTCCTTGAGCTATAACAA CCTCACAGGGAACATCCCAGATCAGATTGGAAGTCTTAAATCCCTAACAAGTCTTCAACTCAGTGGAAATAAACTCTCAG GGCATATTCCACTGTCCATATCAGGATTACAGAACCTTTGGTACTTTAATGTATCAAGAAATGGTCTCTCAGGTCCCTTA CCTGCTATTCCTTTCAAGGGTATCCCTGCCCTTTTGTCCATAGACCTGTCTTACAATAATCTCAGCCTGGGAAGTGTCCC TGACTGGATTAGAAGCAAGCAACTCAAAGATGTTCATCTAGCTGGGTGTGAATTGAAGGGAGATCTTCCTCACTTCATCA GGGCTCACTCTTTGAGCTCCATTGACCTATCAGATAACTGCCTAGTTGGTGGCATTTCTAGTTTCTTCACAAACATGTCC AGCTTGCAGAAGCTCAAGCTCTCAAACAACCAGTTGAGGTTTGACATTTCTCAAATAAAGTTGCCACCAGAGTTGTCTTT CTTAGACTTGCATGCAAATCTTCTCCAGGGTTCGCTGTCAGCAATCATAAATAACAGGACAAGCAGCTCATTGGAGGTCA TAGATGTATCAAACAATTTCATTTCAGGTCATTTTCCAGAATTTGCAGAAGGCTCAAGCTTGAAGGTGCTGAACTTGGGA AGCAACAACATATCAGGTCCAATCCCAGTTTCTATTTCAAATTTGATAGACCTTGAGAGATTGGACATATCAAGAAATCA CATATTGGGAGCAATTCCTTCAAGTCTAGGTCAGTTGCTGGAGCTGCAATGGCTTGATGTATCCATAAACAGCCTAGCAG GATCAATTCCTAGTAGCTTGTCACAGATAACTAATCTGAAGCATGCAAGCTTCAGGGCAAACAGGCTTTGTGGAGAAATA CCACAAACAAGACCACTAAACATCTTTCCAGCAGCTGCTTACGCCCACAACTTGTGCTTATGTGGTAAACCTTTGCAGCC ATGCAAGGGATAGAAACTAGGGGAGATAGGTCAGTGA
CDS sequence (LotjaGi5g1v0354700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATTTTTTCACATGGGTTTTCAACCTTGTTCTGATATTTTCATTCCTGAGACAGTTCTCAGAAAGTGTAACAGTAGC AGCACTGTCTCCTTCCCCAATCTGTTCAGAAGAAGACAGAGCTTCTCTTCTGAGCTTCAAAGCAAGCATTTTCAAGGACA CAACAGAGACTCTTTCTTCATGGACAAGCAGGGATTGCTGTGATGGAGGCTGGGAAGGAGTTCAGTGCAATCCATCCACA GGTAGAGTCAATGTGTTGCAGATACAGAGGCCTGATAGAGACAGTGCCAGTTATATGAAAGGCTCTCTTTCTCCCTCACT AGGAAATTTGCATTTCTTGGAGGTATTGGTGATAAGTGGGATGAAGCACATTACAGGACCAATTCCTACTAGCCTTTCAA ATTTAACCCACCTCACACAGCTAGTTCTGGAAGACAATTCCCTTGGAGGGTGCATTCCTCCAAATTTAGGCCATTTACCT TTGCTGCAGACCCTTATACTGAGTGGGAACCATCTCAAAGGCCAGATCCCTCCAACAATAGGGAGCCTCAGAAACCTTAT CCAAGTTAATTTAGCAAGAAATTTTCTGACAGGTCCTGTCCCCCTCAGTTTCAAAACCCTTGGAAGTTTGCAGTACCTTG ATCTCAGCTACAACTTATTATCAGGGTCTATCCCAGAGTTTGTTGGAGAGTTCCAAAATCTGACCTTTATAGACCTTTCC TATAACCTTCTAACAGGAAAAATTCCAATTTCCTTGTTCAGCCTTGTCAATCTTTTGGACTTGTCCTTGAGCTATAACAA CCTCACAGGGAACATCCCAGATCAGATTGGAAGTCTTAAATCCCTAACAAGTCTTCAACTCAGTGGAAATAAACTCTCAG GGCATATTCCACTGTCCATATCAGGATTACAGAACCTTTGGTACTTTAATGTATCAAGAAATGGTCTCTCAGGTCCCTTA CCTGCTATTCCTTTCAAGGGTATCCCTGCCCTTTTGTCCATAGACCTGTCTTACAATAATCTCAGCCTGGGAAGTGTCCC TGACTGGATTAGAAGCAAGCAACTCAAAGATGTTCATCTAGCTGGGTGTGAATTGAAGGGAGATCTTCCTCACTTCATCA GGGCTCACTCTTTGAGCTCCATTGACCTATCAGATAACTGCCTAGTTGGTGGCATTTCTAGTTTCTTCACAAACATGTCC AGCTTGCAGAAGCTCAAGCTCTCAAACAACCAGTTGAGGTTTGACATTTCTCAAATAAAGTTGCCACCAGAGTTGTCTTT CTTAGACTTGCATGCAAATCTTCTCCAGGGTTCGCTGTCAGCAATCATAAATAACAGGACAAGCAGCTCATTGGAGGTCA TAGATGTATCAAACAATTTCATTTCAGGTCATTTTCCAGAATTTGCAGAAGGCTCAAGCTTGAAGGTGCTGAACTTGGGA AGCAACAACATATCAGGTCCAATCCCAGTTTCTATTTCAAATTTGATAGACCTTGAGAGATTGGACATATCAAGAAATCA CATATTGGGAGCAATTCCTTCAAGTCTAGGTCAGTTGCTGGAGCTGCAATGGCTTGATGTATCCATAAACAGCCTAGCAG GATCAATTCCTAGTAGCTTGTCACAGATAACTAATCTGAAGCATGCAAGCTTCAGGGCAAACAGGCTTTGTGGAGAAATA CCACAAACAAGACCACTAAACATCTTTCCAGCAGCTGCTTACGCCCACAACTTGTGCTTATGTGGTAAACCTTTGCAGCC ATGCAAGGGATAG
Protein sequence (LotjaGi5g1v0354700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHFFTWVFNLVLIFSFLRQFSESVTVAALSPSPICSEEDRASLLSFKASIFKDTTETLSSWTSRDCCDGGWEGVQCNPST GRVNVLQIQRPDRDSASYMKGSLSPSLGNLHFLEVLVISGMKHITGPIPTSLSNLTHLTQLVLEDNSLGGCIPPNLGHLP LLQTLILSGNHLKGQIPPTIGSLRNLIQVNLARNFLTGPVPLSFKTLGSLQYLDLSYNLLSGSIPEFVGEFQNLTFIDLS YNLLTGKIPISLFSLVNLLDLSLSYNNLTGNIPDQIGSLKSLTSLQLSGNKLSGHIPLSISGLQNLWYFNVSRNGLSGPL PAIPFKGIPALLSIDLSYNNLSLGSVPDWIRSKQLKDVHLAGCELKGDLPHFIRAHSLSSIDLSDNCLVGGISSFFTNMS SLQKLKLSNNQLRFDISQIKLPPELSFLDLHANLLQGSLSAIINNRTSSSLEVIDVSNNFISGHFPEFAEGSSLKVLNLG SNNISGPIPVSISNLIDLERLDISRNHILGAIPSSLGQLLELQWLDVSINSLAGSIPSSLSQITNLKHASFRANRLCGEI PQTRPLNIFPAAAYAHNLCLCGKPLQPCKG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 28 | 11 | - | – | |
| PANTHER | 26 | 308 | 283 | 3.0E-178 | – | |
| PANTHER | 26 | 308 | 283 | 3.0E-178 | – | |
| Phobius | 29 | 590 | 562 | - | – | |
| Gene3D | 33 | 258 | 226 | 1.4E-60 | ||
| Pfam | 37 | 77 | 41 | 2.1E-9 | ||
| SUPERFAMILY | 48 | 389 | 342 | 5.1E-60 | – | |
| SMART | 135 | 158 | 24 | 140.0 | ||
| SMART | 159 | 183 | 25 | 9.7 | ||
| Pfam | 185 | 244 | 60 | 3.2E-7 | ||
| SMART | 207 | 231 | 25 | 16.0 | ||
| PRINTS | 210 | 223 | 14 | 6.2E-5 | – | |
| SMART | 255 | 278 | 24 | 180.0 | ||
| Gene3D | 259 | 324 | 66 | 7.9E-18 | ||
| SMART | 279 | 303 | 25 | 31.0 | ||
| PRINTS | 279 | 292 | 14 | 6.2E-5 | – | |
| SUPERFAMILY | 325 | 567 | 243 | 1.12E-38 | – | |
| Gene3D | 325 | 590 | 266 | 2.0E-62 | ||
| PANTHER | 375 | 590 | 216 | 3.0E-178 | – | |
| PANTHER | 375 | 590 | 216 | 3.0E-178 | – | |
| SMART | 399 | 428 | 30 | 75.0 | ||
| Pfam | 449 | 508 | 60 | 9.8E-9 | ||
| SMART | 495 | 519 | 25 | 58.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0354700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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