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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0360500 |
| Transcript ID | LotjaGi5g1v0360500.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein CLP1 homolog; TAIR: AT3G04680.1 CLP-similar protein 3; Swiss-Prot: sp|Q9SR06|CLP1_ARATH Protein CLP1 homolog; TrEMBL-Plants: tr|A0A151RWZ1|A0A151RWZ1_CAJCA Protein CLP1 homolog; Found in the gene: LotjaGi5g1v0360500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67483826..67487949) extracted from Lotus japonicus Gifu genome v1.2.
TCAGGTTCAGGTGCAGTTGCAGGTGGTTCGAGTACAATTAAGCAAGTCAAATTGGAAAGAGAAAGCGAACTGAGAATTGA AGTCGGTAACGACGCACCTCTTCGCCTTCGACTCCTTAACGGCACTGCTGAGATTTTCGGCACTGAACTCCCCCCTGAAA TCTGGCTCAATTTCCCTCCCAGGCTCAAGTTTGCTGTAACTTCTCTTTCCTAATTCCTCACTCACTCTCTCTTCCTCAAT TCAATTGTACAATTTGAAACTTGAAAGTTGAAACCCTTGCTTGTTCTAATAGCATGTGTTAACTAGTGTTAGAAACTTAA AATGTGATTTCTTTCTTTTTTGAGTAAATAGCCCCATTTGCTGGATTTTTTTTATAGGAAGAACTATTGATTTTGCTTGT TTCAGGTGTTTACTTGGTACGGTGCGACGATTGAAATGGATGGTAGTACCGAGACTGATTATACTGCGGACGAGGTAAAC CATTGCAGTGTTGGCCTATTACATGTAATCTTCCTGTGATAACTTGGAAAGAATCGTTGATAAAATCATTGCAACTCTTT TATTGCAGACGCCGATGGTTAGCTATGTAAATGTGCATGCTGTGTTAGAAGGGAGAAGAAGTCGAGCTAAGGCTTCGCCT TCAGATGATCCTGAGTCTTCGCAGGTGATTTTATTTTGTATCTCACAATTAGCAGATTGGGTGTTTGCTTTTACGAAATT TGTACGGTCTTTATATACTGCTGGTAATGCATCTATCTGAACTGTGGAGTATTGTGCTTTCTTTTAGATGAAGTGTGTTT TTATCATAGATTGTGATATTGTGGACCAATATTTGTTATTTCTTTCACGTGGAAACTATATGGCTTGTAGCTTGTGAATT GATAGATTTTGTTGGTCAGGGCCCTAGGGTGATTGTTGTAGGACCTACAGACTCTGGAAAGAGTACCTTGTCAAGGATGC TTCTTAGTTGGGCAGCTAAACAAGGTTGGAAGCCTACTTTTATTGACCTAGATATTGGCCAAGGATCTATAACAATTCCT GGATGCATTGCTGCTACTCCAATTGAAATGCCCATTGATCCCGTGGAGGGAATCCCTCTTGAAATTCCTCTTGTTTACTT TCACGGGCACTCAGCTCCAAGGTATATAGTGATTTGATTTATATTATATTTTTAATTATGAATGGGCTAAAACATATAAG CATTCGTTGATTTGAAGTTTTAAAAAATCATTGATAGAACATTAGCACATGAAAGAAATGTTCCAATAACCAAAGTTTCT TTTTGCAGTAATAATACTGCCGAGATATATAGAGTTATTGTCAAGGAGCTTGCGGGGATACTCGAGAGACAATTTGCTGG AAATGCTGAGTCCCGAGCTGCAGGAATGGTGATAAATACTATGGGATGGATAGAGGGACTAGGCTATGAAGTAACTGACC TTTAAACTCTACCTTATTGTTAAATTGAACTCTACTCAGACATGGAACCGCTGCTGATTCTGATGAAAAAACTCTTGATT ATAGTGGTCTCTCTCCCCTCTCTCACTCTTGTATTTTTTTTTTTGGGTATTTTATTGCAGTTGCTATTGCATTCAATCCG TACATTCAAGGCCAATGTGGTCCTTGTTTTGGGTCAGGTAGAGATTCCTTATCTAAATTCAAATTCAATATGCATAATTG CGTTTTCCATATTATAGTTTTGCTTGACTCATTCATGCCTTCAATTCTTACACTTCTTGAAATAAATTATTCATCTTTTT AGGATTGGGTTTGGGAATTCGGGGAAGGGGCTACAGAGCTGGATGCTAAAACTTATGTGAAAGCTCAGTGACTCACGCTT TTCCTTTGAACTCCTTATAGGAAAAACTGTGCAGCATGCTCAAAAACGAGCTCAAGGGGGAGCCTAAAGTAGATGTTGTG AAACTTCAGAGGTCAGGCGGCGTTGTATCTAGGAACTCAAAAGTCCGTCAAAATGCCAGAAGTTATAAGATAAGGGTAAA CCTGCTTGTCCACTTTTAGATATTTTCTACATGTATTAAACATTTTTTTATCTGCTCCCCTATTTTTTTTTTTATTTTAG AGGATTTTGATTTAAACTATATGAATCTGTTGTGTGTGCAAGCACTCGTGCTACTGAACTTACTAAATGCTAGTTGTTGG TGTAAGAATGTTTATTATTACTCTTTGGCCACAATTCATCTTTCATTAAAAATCCTAACCGAGCCAAACAGTTAAATTGA GATAATGATGTGTTTCTTTATTTATTTATTTACTTTGCTGAAAATTAGATAGAATAAAAAATAATTCAACATTGAGCAAC AAAATCTGGTATTATAGCCACACTAATTATTGGCTTGTGTATTTCGGAATATTTGAAATTTTTTAGTGAAAAAACAAATG TAAATTTGAATCAAGACATCATTTGACTGTGTTTGAAGTTTGAACATAAACAGTCTAATGGGTGGCACTTGGTTTTTTCT TACAATGAAATATATGCACTCCTCAGCATTTACTGTGCAATACAAAAATGCATTGACAGAAGATTACTTTTACCTTTTGG CAATTTGTTTAATAGCCTATGTTGAGGATTTTATTTTTTCTCCCCCTCCCTCTTTCAACTGATTTGGCTCTCTAATTGAA ATTGCTGCCTTCTCATTTTTGATGCAGGAATACTTCTATGGCCTTGGAAATGACCTTTCTCCACATTCTAATATTGCAAA TTTTAGTGACTTGTTTGTTTATCGAATTGGTGGTGGGCCACAGGCCCCTCGCTCAGCCTTGCCGATTGGTGCAGAACCTG CTGCAGATCCAACCAGACTCGTTCCTGTAAATATAAATCATGATTTGCTTCATGCAGTCCTTGCTGTCTCATTTGCCAAG GAACCCGATGAGATCATTTCAAGGTACTGCAATCTTCTGGATGTTTAATTTTTATAATCAAAATGTCAGTAATCCTTTTA GTTTTAATTTTGGATAGAGTGCTGTGATGGTGTTTGATCCATGTATTATTGATTGCTATTGTTGTAAATGTTTGTTAATC TTTACCTAAAGATTCAAATTTCATAATGACTAGTCAAATGTTAGGGCAAAAGAGGAAAAGAAAAGCATGTGCCCAATTGA TTAGGGATCAAGATCCTCTGTCCACATTTCCTGTCCCCCAAATAACAATGTGCACAGTGGTGTTTGTGTTTGCGACAGTG AGAGGGAAATGTGCCTTATACGAATATGCTGATGCAGATGCATAGATTTGTGTACTAATTTGTACCATTATATAGCAGAG TCAAATGGAGAATGGTCAATTCATCTGCTATTTGATTGTGATCTACCTGGAGTTTTCCAATTTGATTTATCTTTATTTTT TAAAACATTTCTTCCTTATCCTTGAAAAGAAATTCTGTGCATACAACTGGGGCCCCTTGTGAGATATTATGCCATATTAA GGATAAAAGTTTGATTTGTAATGGATAATAACCCTGAATATACCCTCAACATATTTTGAGAGAGAGAGAGAGAGAGGTAG AGGCAGGAATATGATTAAAATATTTTCTACTAATAAAACACACATCACAATCATCATATGTATGTGGTTTTTCCAGCGCT TATGATGACAATAAATGCTTATCATAAGTTAATTTGAGAAGCTTAGTTCAAAATACCATATAGGTAGTTAGGTGTAATTT GTGAATGCTTATTCATAAGTTAATCTTGAAGCGTATGAAAAGAAGATCAAAACAATTTATAGATGGTCATAAACTACTTT CAGATGTTTACCCAAACACTTACATTATCCTATTTTGAAAATAGAAAAGTACTTTTTAAAAGGGAATATTATGCCCTCCT TTTCTATTCCTAGATTCCCATCTCTTATACTGTTTTACCTCTTTTCTGGTGCAGCAATGTTGCTGGCTTTATCTACGTAA CAGACATTGACATTCAGAGGTTTGTATCTATAGATTTCATTATTCATTTAATTCTGCGCTTTATGAAGAATGTTTGCATG ATGGTTTGCATTTCTAACTTAATTTGTACAATGCAGAAAGAAGATAACCTACCTTGCACCATCTGCTGGAGAACTTCCAA GCAAGTATTTGATTATTGGAAATATAACATGGCGAGAGACATGA
CDS sequence (LotjaGi5g1v0360500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGTAGTACCGAGACTGATTATACTGCGGACGAGACGCCGATGGTTAGCTATGTAAATGTGCATGCTGTGTTAGA AGGGAGAAGAAGTCGAGCTAAGGCTTCGCCTTCAGATGATCCTGAGTCTTCGCAGGGCCCTAGGGTGATTGTTGTAGGAC CTACAGACTCTGGAAAGAGTACCTTGTCAAGGATGCTTCTTAGTTGGGCAGCTAAACAAGGTTGGAAGCCTACTTTTATT GACCTAGATATTGGCCAAGGATCTATAACAATTCCTGGATGCATTGCTGCTACTCCAATTGAAATGCCCATTGATCCCGT GGAGGGAATCCCTCTTGAAATTCCTCTTGTTTACTTTCACGGGCACTCAGCTCCAAGTAATAATACTGCCGAGATATATA GAGTTATTGTCAAGGAGCTTGCGGGGATACTCGAGAGACAATTTGCTGGAAATGCTGAGTCCCGAGCTGCAGGAATGGTG ATAAATACTATGGGATGGATAGAGGGACTAGGCTATGAATTGCTATTGCATTCAATCCGTACATTCAAGGCCAATGTGGT CCTTGTTTTGGGTCAGGAAAAACTGTGCAGCATGCTCAAAAACGAGCTCAAGGGGGAGCCTAAAGTAGATGTTGTGAAAC TTCAGAGGTCAGGCGGCGTTGTATCTAGGAACTCAAAAGTCCGTCAAAATGCCAGAAGTTATAAGATAAGGGAATACTTC TATGGCCTTGGAAATGACCTTTCTCCACATTCTAATATTGCAAATTTTAGTGACTTGTTTGTTTATCGAATTGGTGGTGG GCCACAGGCCCCTCGCTCAGCCTTGCCGATTGGTGCAGAACCTGCTGCAGATCCAACCAGACTCGTTCCTGTAAATATAA ATCATGATTTGCTTCATGCAGTCCTTGCTGTCTCATTTGCCAAGGAACCCGATGAGATCATTTCAAGCAATGTTGCTGGC TTTATCTACGTAACAGACATTGACATTCAGAGAAAGAAGATAACCTACCTTGCACCATCTGCTGGAGAACTTCCAAGCAA GTATTTGATTATTGGAAATATAACATGGCGAGAGACATGA
Protein sequence (LotjaGi5g1v0360500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGSTETDYTADETPMVSYVNVHAVLEGRRSRAKASPSDDPESSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFI DLDIGQGSITIPGCIAATPIEMPIDPVEGIPLEIPLVYFHGHSAPSNNTAEIYRVIVKELAGILERQFAGNAESRAAGMV INTMGWIEGLGYELLLHSIRTFKANVVLVLGQEKLCSMLKNELKGEPKVDVVKLQRSGGVVSRNSKVRQNARSYKIREYF YGLGNDLSPHSNIANFSDLFVYRIGGGPQAPRSALPIGAEPAADPTRLVPVNINHDLLHAVLAVSFAKEPDEIISSNVAG FIYVTDIDIQRKKITYLAPSAGELPSKYLIIGNITWRET
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 358 | 358 | 5.6E-155 | – | |
| PANTHER | 1 | 358 | 358 | 5.6E-155 | – | |
| Pfam | 2 | 33 | 32 | 3.7E-5 | ||
| Gene3D | 15 | 246 | 232 | 8.2E-85 | – | |
| MobiDBLite | 30 | 58 | 29 | - | – | |
| SUPERFAMILY | 47 | 156 | 110 | 4.53E-11 | ||
| Pfam | 53 | 242 | 190 | 5.5E-66 | ||
| CDD | 57 | 90 | 34 | 1.92841E-4 | – | |
| Pfam | 247 | 358 | 112 | 1.6E-32 | ||
| Gene3D | 249 | 359 | 111 | 2.2E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA 3'-end processing | Any process involved in forming the mature 3' end of an mRNA molecule. |
Expression pattern of LotjaGi5g1v0360500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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