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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0362200 |
| Transcript ID | LotjaGi5g1v0362200.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Callose synthase-like protein; TAIR: AT5G13000.1 glucan synthase-like 12; Swiss-Prot: sp|Q9LXT9|CALS3_ARATH Callose synthase 3; TrEMBL-Plants: tr|K7LM61|K7LM61_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0362200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67615358..67616180) extracted from Lotus japonicus Gifu genome v1.2.
TTGGTGACAGATCTATGGCATATCATGGTTGGTGATCTTTCTAATACTATTTGTAATGAAGGTTAGTAGCAAGTTATTTT GTTCATAACGCATTCTTAAGACAAACATTATGGGCTGAAACTTAGTGCCCTGCTCATTGGCTGCACATGTGGTAGGGTGT CACATATTATTTAGCAATGGAAGAAATCGATTGTTCTCTTTCTTGCCCGTGCAGATCATGTTAAAATCCTTAAATACGTC AACATTACTTTCTTATTAACCAAATTTCTGCTATCTTATTTTCTTTTTCCATGTCTCAGACGGTGTCTGTTGGGAGACGA AAATTCAGTGCAGATTTTCAACTTGTCTTCCGGTTAATCAAGGGAATGATATTCGTGGCTTTTGTCTCGATTCTAGTCAC CATGATTGCCCTTCCTCACATGACAATGCAGGACATAATTGTTTGCATTCTTGCGTTCATGCCTACTGGTTGGGGGATGC TACAGGTGAATGCTCTTTTTCCTTTTATAGTCATTTAGTAAAAGTTTGTTATTTTGGAATGAGATGCTATAATGTCTTCG TTTTCCTTTTGCAGATTGCACAAGCATTAAAGCCTCTAGTACGCCGAGCTGGATTTTGGGGATCAGTAAAAACTCTGGCC CGTGGTTATGAGGTTGTGATGGGTTTGCTTTTGTTCACTCCAGTTGCCTTCCTGGCTTGGTTTCCTTTTGTTTCAGAATT TCAGACCCGCATGCTGTTCAACCAAGCTTTCAGCCGAGGTTTGCAAATTTCTCGTATCCTTGGAGGCCAAAGGAAGGGAC GCTCTTCTCGCAACAAGGAATAG
CDS sequence (LotjaGi5g1v0362200.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGGTGTCTGTTGGGAGACGAAAATTCAGTGCAGATTTTCAACTTGTCTTCCGGTTAATCAAGGGAATGATATTCGT GGCTTTTGTCTCGATTCTAGTCACCATGATTGCCCTTCCTCACATGACAATGCAGGACATAATTGTTTGCATTCTTGCGT TCATGCCTACTGGTTGGGGGATGCTACAGATTGCACAAGCATTAAAGCCTCTAGTACGCCGAGCTGGATTTTGGGGATCA GTAAAAACTCTGGCCCGTGGTTATGAGGTTGTGATGGGTTTGCTTTTGTTCACTCCAGTTGCCTTCCTGGCTTGGTTTCC TTTTGTTTCAGAATTTCAGACCCGCATGCTGTTCAACCAAGCTTTCAGCCGAGGTTTGCAAATTTCTCGTATCCTTGGAG GCCAAAGGAAGGGACGCTCTTCTCGCAACAAGGAATAG
Protein sequence (LotjaGi5g1v0362200.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTVSVGRRKFSADFQLVFRLIKGMIFVAFVSILVTMIALPHMTMQDIIVCILAFMPTGWGMLQIAQALKPLVRRAGFWGS VKTLARGYEVVMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQRKGRSSRNKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 2 | 141 | 140 | 2.4E-75 | ||
| PANTHER | 2 | 141 | 140 | 2.4E-75 | – | |
| TMHMM | 17 | 39 | 23 | - | – | |
| Phobius | 20 | 40 | 21 | - | – | |
| Phobius | 41 | 46 | 6 | - | – | |
| TMHMM | 44 | 66 | 23 | - | – | |
| Phobius | 47 | 68 | 22 | - | – | |
| Phobius | 69 | 87 | 19 | - | – | |
| TMHMM | 87 | 109 | 23 | - | – | |
| Phobius | 88 | 109 | 22 | - | – | |
| Phobius | 110 | 145 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | 1,3-beta-D-glucan synthase activity | Catalysis of the reaction: UDP-glucose + [(1->3)-beta-D-glucosyl](n) = UDP + [(1->3)-beta-D-glucosyl](n+1). |
Expression pattern of LotjaGi5g1v0362200.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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