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LotjaGi6g1v0013300.4

Overview

Field Value
Gene ID LotjaGi6g1v0013300
Transcript ID LotjaGi6g1v0013300.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Exosome complex component; TAIR: AT1G60080.1 3'-5'-exoribonuclease family protein; Swiss-Prot: sp|Q96B26|EXOS8_HUMAN Exosome complex component RRP43; TrEMBL-Plants: tr|I1KWF8|I1KWF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0013300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:2461427..2466382) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGGTTGCCCAATACATCTGAGGACTTATCATCTGAAATGGAGGTTGATGCCTTTAGACGCCTTTTCCCACTTAGATT TTTTGAGCGTCATCTTTCTGAATCTATACGCCCTGATGGTAGACCACTTGCGAAAGCGAGAGATACAAGCATATTTCTTG GTTAGTTGCTTTTTTTACTTAGTAGCAATCGGCTAAATCTTTGCTTTGTAGTATGCTATTCACTCTTGGAGCGAAACTGA GATGGTTAGCTCTTTTAATCAGGTGCTGTTGCATCTGCTAACGGCTCAGCTCTTGTGAAGATTGGATCAACTGTTAGTTG TTCTTCCTGTGTCTATTTGTGCTATGTCCTTGTGCATTTGAGTTCTTGACTTGATTATTGAATGAGTTTAACGATTTCAT GTGTCTTCTTTGTTCAGACTATGTTGACTGCAATAAAAATGGAAGTTATGGCTCCCTCCTTGGAGTCACCAGATGTGGGT TGTATAGGTTGACTTTGCCACTTGTTCATTAGTTATTGATTCCTGCCCACATATACCATGAGATTTTAACGTGTTAATCT CTGCTATTTCAGCTATTGATTTCCACATGCCTCCAATTTGTTCTCCAATTGTTAGGCCCGGAAGGCCTGCTGAAGCATCA CCAGTTGTGACAAAGCAGTTGTCTGACACCATTTCAAGGCAAGTTATAATCATTCATGTCTCTTTCTCAGGTTCAGTTAT TTCGGATGATGCAAGAAGCTACCTCTCCCAAAGTCACTCTACCCAGCTTTTTTACTAGAATAGAAAAAGCAAGCAAGAGA AAAAGAATAAAATAAAAAGAGAACTTTTTAGATTTAGCTCTTCGATATTAAGGAAGATTTTGTTAATATCTGTGCATAAT TTGTTTCTTTGAACTCTCTACCAAAGACAGTTCACCCACATTTGTATCAGTCATACTTCATACAAATGTTTTCTGTTTTG ATGAGGATGTGCATATGTGATTGTGTTTGCTGCCTTGAGGGCTCATTTTTTGACATATTCTTATTAAAAAGTGCCCATAA TTATTGATGTTTACTATGATCATTAGTGAATTAACTTTTAGCTGAAAGTCTGTTGTTTAAATTGGTCATGGATCAGATAA TTCCCCACTCTCGGTTGTAAAATTTTTCATATGGTGATTTTTCGCCTCCTTTTTTATGGACATGGGCTTGTATTTGTATC TGTCTATGCCAACCTTCATGGTGGTCAATAATCTTGGTTGCACTTGTTGTCTGTTAAATTTGGTTTCAATTTAATTTAAA TTATCCTATGTTTTATGACTTTTTTTGTCTTGCAGTTCTGGAATGATTGATTTGAAAGAATTGTCCTTGGTCAGTGGGAA AGCTGCATGGATGGCTTACTTGGTAAGCTTTTATATTGACCGCACTTATCAACCATAAAAAGATGCACAGTACTCGAATT TTGGTGCTAAGTACCCTATCTTTGTTTGCTTTGATTGTGTAGTTGTAGTTATCAATCTATTGAATATATAATGCTGTCTT CTTTATCATACAGGATGTCTATTGTTTGGATGCTGATGGTGCTCTTTTTGATGCTGCTTTACTTTCTGTAGTTGCTGCTT TATCTCATTGTAAGTAGTGCATCTTCAGTCCTATTATGAATCATTCAGAAGATAGATCATTCTTGCCTCAAGCCACTGTA AAATAATAATTCCCAACTTTATGGATTGTTTCTTTAAATCACATAAAGAAATGAATGGCAATCTTAACAAATTCATTCCA ATTGGGAGATCTTAATAATAATATTAGGACTGAGACGGTGAGTTGGAGACCTTAGAAAATCGGCCCTGGTTGGACCCCCC TTTGATTCATGCTGTTCAACATCAGGACAAGTTGAATGTTTAGACTTTAGGGGGGGGGGGGGGTGGAGTATTGGTAGGTA TATTTTGTTAATCAAATAGTAGTTAGTTGGTTAGGTATATTTAGTTAATCAAATAGTAGTTAGTTGGTTAAGGTATGCTA GGGGTGAGAGGGAGAACTGGCCTGTCATTTCAATGTAATCGGGGATCATTGAAAGGATAACTCCAGATCTCTCGAATACT TGGTCTGATTTAGTTTTATTATCAATTAACAATATTCTTTGTATTCCGATCCAGTTTCTGACTCACTGCAAGTCCAATCA ACTTTATTCATAAATAGACTTGGTTTAAGCACGAGCAGCCAATCCTTGTGTATTAAAGGCTATTTTTTTTTTGCCTTGTT GTATCGAAACAGCTCAAAGTCTTTTCCATATTCATCACTTTTTATAATGAATGTCTTATCAAAATTAGGAATAGCCAATA TCGATGAAGTTGCCATGGCTGTTTTAAGAGCATCATAAGTGTCTTAGGCATCATGCCGCTTTAAAACCGAACAGCTGCAT TAGTTGTCTTGCGATCTAGCATATCTTTAAGGACAAAACTAACCTACAGTACTATATGTACTGTTTGTGCTGTTGCCAAT TGAAAACTCAACCACACACTCTTATATTTTATTAATTTTATTAATGTGATAACTTCTCTCAACTTCTCCTTTTCCAACCC ACATGTCATGTAATTGGACAAAAGTAAAAACAACATATTGAACTGTACCAAAGTTTCGTCCTATCTTTAATTCTGTGACC AAGGTACTCTGGTTTGGCCTGCCCAAAACTATTCTTGTTGTTTTCTTCCACAAACAACTGGTTTTCTATAGTTGATGGAA GACTATCAGTAAATGACCTAACTGCAGCTGCTGCTCCTTACTGTAAACTAGAATATGATCAAAATATACTAGTACAAACT TCCTGAGAAAAGGACTTAAATAGCACATTCATCAATGATTGAAATGTTGAAGGGACATATGGTTAGCCAAACTGCATCAC GAGATTGACAATGGCTTCCATGAGTTTAGAGAGCTGTCAAGAACATCATTTCCGTATACTAATTTGGTGATAACCAGCCT TCAAATATGACTTGGAAAACATTGTTGCTCCTCCCTCCTCCCTATTCTTTGAGTAGTTCATAGATGGCGGGTATGGGAAA CTTGTCTGTAACTTGTCCAATAGCCTCATAATCTACACCGAAACTCCAGCGCCATCTTTCTTCCTAACCAATATGATTGT ACTTGAGAAAGGATTAATGCTGGGTTTAGGGTTTAGGGTTTAGGATTGGGTTTGGTCCGTAGTTCTGTGAATCCTATCTT CCCAGTATCAGAGTAGAATTGGGTTTGGTCTGTAGTTCTATGAAAGCATTTAGACCATGCTGATATCTTTTTGGGCATTC CTTTTTTAGCAGACCCAATCTCTTTCCTCTCCACTGCCTTATTCCACTCCTCCACTTATTGGGCCTTGTTCATTAATTAA ATATCAAAGTGAGCTCACACGATGTAATTTCACTTCAGCCTTAATATCTCATTAAGGCCATTCATAAATATTCCCTTCAA TATCTTCTTAATGTGATTCAATGATCGTGTAAGCATTTTGAATTGTTCCCATTATCTGCTGTTGCATTAGATTGATACAA ATGCAGCAAGAACTCCTGATTTTGTGCTAAGAGATGGCTGACACGGGTGACAACAATCTTTGACGTAAACTCCCCCACCC CCACACAATGTCACATTCAGGATATTATGCCATCCTAGTGGGAAAAGACTATTTGTTCTAATATCTTAAGCAAAGGGAAA AGGCTATTTGTTTAGTCGATGTAAATGTAACCAACCCAACCTAGTGGGAAAATACTATTTGTTCTAATATCTTAAGCAAT GGTGTATAATGAGTTACCGAGACCAAATTATTGAAATAAGGATTTTTGTTGAGAAGTCCTACATTGACTAAAGATATGAG TATGACCAAATAAGTGTTTATAAAGGGTAGAACAACCCTTATAAGCGCTTTGAGGTGAGTTAGGCCTAACCCAAATTGTA AGAGTTTTGTTATGAAGTTTTGGTCCTTAAATATTTCTTTCTTAATACTGAATTTGGTTTTATTTTGAATTATGTTGACA GTGCAAATTCCTTCTGTTGCCATGAACGATGACGGCAAAATAGTACTCGTATCCGATGAAGATGGACAAAAGCAGGCACA GGAGTTGGTTAATAAGGAAAAGAGGAAGCTTACATTAAGAAACATTCCATTCTCATTAACATGCATACTTTACAAAAATT ACATCTTGGCAGATCCTACTGCAGAAGAAGAATCCATTATGGAAACCCATATGACTGTAGTTTTGAATACATCTGGTCAA CTTATATCTCTTTACAAGCCTGGCGGGCCAGTTCTTGCCTATACTTCTGCTCTCCAGGTTAGTTTGCATATAACCGCATT ACATTTATTGAATTAACATTATTTGTCTCATTTTGGATTAGCATGCTAATCAAATAATTATGAGCAATTTTGCTCATAGA AACTTCAACAATTTAGTATTAGAAATTGGGTGTTTTGGGATAGAGTTATTAGAGCCTATCATAGAACGTTTATTGGAGAC CACCCATATATGAGCTGCATGCAGATGTTCATTCCTGCAAATCCCACGCTTCAGATGTCCAGTATTGGGCATAATGAGTG TGTTGAGAAGTCTCTCACAATGATTAGAGATATGACCAAGATAACCTTGATATATGGCAAGACAATCCTCACCTCAGCTC AAATTCTAAGATCTACCCACAAGGATGTGGTGTTTAGGGCTAACAAAACACGAAACATTGAAAATAGGGTATCAGGGTAT GAGTTTTGTAATTTAAAATTGAAAACGACAAATAAAAACAGAAAATGAAAATAAACCAATATATCATTAGTATCGTAATG AATCATTTACAAATATATCATTAGTATCGAATTATTCAGATGGGAAGTTAACGATTTTTGTGGTTTCAGGACTGTGTTGC ATTGACCAGGCAAAGAGTTAAAGAACTTAAGAGCCTCTTAGACAGAGAAAATTCGGCTGCTATGGAAGTTGAGTAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0013300.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGTTGCCCAATACATCTGAGGACTTATCATCTGAAATGGAGGTTGATGCCTTTAGACGCCTTTTCCCACTTAGATT TTTTGAGCGTCATCTTTCTGAATCTATACGCCCTGATGGTAGACCACTTGCGAAAGCGAGAGATACAAGCATATTTCTTG GTGCTGTTGCATCTGCTAACGGCTCAGCTCTTGTGAAGATTGGATCAACTACTATGTTGACTGCAATAAAAATGGAAGTT ATGGCTCCCTCCTTGGAGTCACCAGATGTGGGTTGTATAGCTATTGATTTCCACATGCCTCCAATTTGTTCTCCAATTGT TAGGCCCGGAAGGCCTGCTGAAGCATCACCAGTTGTGACAAAGCAGTTGTCTGACACCATTTCAAGTTCTGGAATGATTG ATTTGAAAGAATTGTCCTTGGTCAGTGGGAAAGCTGCATGGATGGCTTACTTGGATGTCTATTGTTTGGATGCTGATGGT GCTCTTTTTGATGCTGCTTTACTTTCTGTAGTTGCTGCTTTATCTCATTTGCAAATTCCTTCTGTTGCCATGAACGATGA CGGCAAAATAGTACTCGTATCCGATGAAGATGGACAAAAGCAGGCACAGGAGTTGGTTAATAAGGAAAAGAGGAAGCTTA CATTAAGAAACATTCCATTCTCATTAACATGCATACTTTACAAAAATTACATCTTGGCAGATCCTACTGCAGAAGAAGAA TCCATTATGGAAACCCATATGACTGTAGTTTTGAATACATCTGGTCAACTTATATCTCTTTACAAGCCTGGCGGGCCAGT TCTTGCCTATACTTCTGCTCTCCAGGACTGTGTTGCATTGACCAGGCAAAGAGTTAAAGAACTTAAGAGCCTCTTAGACA GAGAAAATTCGGCTGCTATGGAAGTTGAGTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0013300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGLPNTSEDLSSEMEVDAFRRLFPLRFFERHLSESIRPDGRPLAKARDTSIFLGAVASANGSALVKIGSTTMLTAIKMEV MAPSLESPDVGCIAIDFHMPPICSPIVRPGRPAEASPVVTKQLSDTISSSGMIDLKELSLVSGKAAWMAYLDVYCLDADG ALFDAALLSVVAALSHLQIPSVAMNDDGKIVLVSDEDGQKQAQELVNKEKRKLTLRNIPFSLTCILYKNYILADPTAEEE SIMETHMTVVLNTSGQLISLYKPGGPVLAYTSALQDCVALTRQRVKELKSLLDRENSAAMEVE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11097
6 294 289 2.4E-125 –
PANTHER
PTHR11097:SF9
6 294 289 2.4E-125
IPR033196
Gene3D
G3DSA:3.30.230.70
15 298 284 1.2E-76
IPR027408
SUPERFAMILY
SSF54211
17 241 225 1.11E-43
IPR020568
CDD
cd11369
20 292 273 3.47262E-126 –
Pfam
PF01138
47 180 134 6.6E-21
IPR001247
SUPERFAMILY
SSF55666
213 295 83 5.29E-20
IPR036345
Pfam
PF03725
219 265 47 8.1E-6
IPR015847

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000178
Cellular component Exosome (RNase complex) A ribonuclease complex that has 3-prime to 5-prime exoribonuclease activity and possibly endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of
GO:0006401
Biological process RNA catabolic process The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0013300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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