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LotjaGi6g1v0014200.1

Overview

Field Value
Gene ID LotjaGi6g1v0014200
Transcript ID LotjaGi6g1v0014200.1
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Pectate lyase; TAIR: AT4G13710.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q944R1|PLY15_ARATH Probable pectate lyase 15; TrEMBL-Plants: tr|A0A0R0E8X8|A0A0R0E8X8_SOYBN Pectate lyase; Found in the gene: LotjaGi6g1v0014200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:2566826..2573039) extracted from Lotus japonicus Gifu genome v1.2.

CACTGCACCCACGTGCGAGAGGCGGTTAAAAAAGTGAATTAGGGTTAAGAGTGGTTAAATGGAAAAGCAAAAGCAACGAC TTCGTTAGTTAACGGCGTGAAGTGTTAAAAGGAAGAAGAACCAAACAAGAAAAACGATCAGTTAATTAACGCCGTGAATT GCTCGTCGTTATACCACCGAGCCTATAAAATGGCCGTTACGTTGGAACCCGTTTTCTTCAGTCCATTCCACCATTCCCCT TTCTCTCTCTACCGACCCTTCTCTCTCTCTCTCTCTACATTCTCTCTCGTAAAAGCAAACACTGAGAGAAGAAGAGTGAA ATCAATTTCAACAATGGCGATTTCTTCTTCTTCTTCTGCAAAACTGGTCCTCCTTGCTTGCTTCTTGTTGCTCCTTGCTG CTTCAGCAATGGCCGCACCACGCTTCTTCTCTTCTCAGCTCAGGTCCCTCTCTCTCTCTCTCTACAGTCAATGTGTGTTC GCTCTGTTTTTCTCTGTTTTGGTGTTTGAAGCAGAGCTTCTCTGTTTTCTGCATTGTGTGGTTTTCTGAAACCAAAAAGG GGAAAAAGTGTGAAATCTTTGCTTGGCGCCATAGCAATGTTTCCAAATTAAAGACCTAATTTCACTTTTGAAACGAATTT CGAAGCGATTTGCAAAAGCTCACACAATAGAAACCGAACATTTTGCTTTGTGAATTGTGCCTTTGACCAAATTCTTCTGG ACCACTTCATCTCTTAAGCATAACTTCACATTCTACAAATCTCTGAATCTGAACCACATTGTGCGTTTCACGTGATTTTC GAAAAAAAAATGAAAAATAGTGCGAAAGATCTGCAATTACAAGTTTCCAATTGAAAATCCCCAATTTCATTTTCATTTTT TTCTTCTACATTTTCTCATTTTGTGGCGTTTTTTTGTTGTTGTTACAGGAATGGTGAAGCTGAAGTTGAAACGCACAGGC TAGCGAGCTTCAACGACTCAACAATGGCGGTGAGGTTAGTAACAGTGACCCTTCTTCTTCTTGCTTAAAATCTCCGGTGA ATCTCGACCGTCTGTTGAGACTTTTATTCTGAGCCGTTAGATCGAGCATATTCAACTAACGATCACAGCCGTTGAAAAAC CGTCGGTTCACTCGATCTGGATCGTTTATTCGGTTATGTTCGTTCTTCGGATTCCTTTGCCTCTCTGTTTTGTCTCAGAT AAAAACTCCTCAGATACCAGTAAAGGCGTTAGTTAACCGTCAACAAACTCTTTTTTCTCCCGAAATTGCCCTCCAAAATG TACCCTCTCATTTCTCAGCCGGCAGTGGCACTTTTGTCATTGCACTAAATGGATAAACTTTTTCCTTCTCTCTCCTCAAA ACGCTATTAACGGTTTTTGTGTTTTTCTCTCTTTTACTTTTTTACTTTTTTACAGTATCCACATGTACTATAGCACTAGT AGCGTGTGTACTCCACGAACTCGCTCTATCTCACCGACACATGTCCCTGTATAATCGTTTCATTTTCCCAAACTTTTCAC TTTTTTTTAATTAAATCTCATCATTACAATTTTTTGTGAAATAGATATTTATTTGGTTTTGGGTCAATAATATATTTGTC TTTTCGTATTTATTGAATTTTTAATGTAATACATAAGATAAATAGTTAAGCCTACAAATAGAACTATTTTTTCTCTGAAC ATGCACTGTATAAATAACTTTTGGGTGTAACTGATTATGCTAGTAATTGCTTCTTTTAATTTGTGGTCCAATGTTCAGAA AATAAAAAAGCAGTAGTTTAATTAGGTGAAAATTGGTTATATTAGTTGAAGTAGTAGTACATTGATTGATGTAAATTTGG TTGTAAGAATGTTTAATATAGTTTATTTAGGTCTATTGGCACAAATAACTAGCTCTATAGACTAAGGAAATAAACAAACA TTATACAGTATTGAATTAATCAATTGACCATGATTATGATTTTGGGTTTTGATTTCTATTTGCAGGGCAAAAGAAGCTGA GGAATTGAATGAGCGTGCTGCGGTGGCTAACCCAGAGGAGGTTGCTTCAATGGTTGCGATGTGGGTCTTTCTTTCTACAT TTTTCAACTTAGACAATTCTTGTTGCATTGTCCATTCTTAGCTAGGCAACGAAAATTAGAGAAAAAGAGAAAACTTAATG CACCTCACCTCACTCACTGCATTAATCCATAATGATATGTTCACGTGGTTTAGGCGGGTTGTAGGGTATGGTGTTCCCTC CCATTGTTGGAACCCCTAATAACTCTCTTCACCAACTGACCCATATTTTTCTCTGTCACGTTACTTTCCTGGTTTTGACA TAGTTGAATGAAATTGAATTTGTGACGACTCACCCGTTTTTTATTTTACCCCTTTAGGGATTTCAAGTTGGAACCTTGTC CCTGACTACCTACATTCTCGCTCACTCTCCCTTTCACCCTTCATTGACTAACATCACATACACTATTTCACACCCGTTTT TCACGCTTATAATAATTTTCCCATGTCTTTGAGTAAATGTTTTATACAACTCTTTCTGTCCCATGTTTTGTAATTATAAT TATAATACTTGTTTCTTGCAGTTCTATTCTGCTTGATCTAGTTTTCTGTATTAAAACATTTACCATGTCATTGGTTCCTT ACAAGTTACAACGTGTCTGCAGTAGCATTATTTGTGTCAAGATCCGTGTAATGTCAAAAATGCATATTCATCATATCTTC CATTCCAGATAAAGCCAAAAGGATTAGCCGTTATACTTGAATGTGTAACACTTATTGTCATGGTATTAATGATCATATGA TAACTTGAGGAAATTGACTTTGTGTAGTTTGATTGAACCTGTATGCTCAACAAATGAAGATAAGCTGTTTGATTTAATGT CTGATAGAAATGTGGTTGATTCTTTATAACTGCCTATAAGTTGTTTGATCAATTGACTGTGAATTTGTAATAGCATTCTG AAAGCGATGTGTTTGATACAACATTCTGTATAGCTTTTTTTTACCTTGTGATTGATTCCTTACAAATTGCCTATAAGCTG TTTGATCAATTGCTTGTGAAGTTGTGATGGCATTCTGAAAGAAATGTGTTTGATATGACAGGAACATTCACAACAGCACT GAAAGAAGGAAGCTGGGATATTTCTCCTGTGGAACTGGTAACCCCATTGATGATTGCTGGCGTTGTGACCCCAACTGGCA GCAAAACAGGAAGCGCCTTGCCGACTGTGGTATTGGTTTTGGCAGAAACGCCATTGGTGGCCGTGATGGAAAATTCTATG TTGTCACTGACTCCAGGGATGATGACCCTGTTAACCCCAGGCCTGGTACTCTTCGCCATGCTGTTATCCAAGATAGGCCT CTCTGGATTGTGTTCAAGAGGGACATGGTTATCACGCTGAAGCAGGAGCTCATCATGAACAGCTTCAAGACAATTGATGG CAGAGGAGCCAATGTCCACATTGCTAATGGAGGGTGCATCACAATCCAGTATGTTACCAATGTCATCATCCATGGCCTGC ATGTCCATGACTGCAAACCCACTGGGAATGCTATGGTAAGAAGCTCCCCAACACACTTTGGGTGGAGGACAATGGCTGAT GGAGATGCCATCTCCATATTTGGCTCAAGTCACATCTGGGTCGATCACAACTCCTTGTCCCATTGTGCTGATGGTCTTGT GGATGCTGTCATGGGCTCAACAGCTATTACAATTTCCAACAACCACCTCACCCACCACAATGAGGTACATTCTACTTTCC CCTGCATCATCAATTGAGTTGCTGCTGCAATTTTTTCTAGCTCACATTGTTAATTAATCTGCTTGAAAATTCAGGTGATC CTGCTGGGCCACAGTGACTCTTACACTAGAGACAAGCAAATGCAAGTGACCATCGCCTATAACCACTTTGGAGAGGGACT GATCCAGAGAATGCCACGGTAGTATTTATTGCCACTTTTATTTTGTTTCCCTTTCCTCTTAGTCTGCTTTAAATGTAAAT TAATGTTATACCATAAGACAGGTTGGTTTGGAGAAGCAACAACCTTCTTTCTTGGGTGCATTAATTTTCAGCCTCCTCCT GCTTTAAGAAAATCACAAAATTTTGTACATGTAGGGTCCAGATTGTGTTAAATCAAGTCATGGGTCGAAAATGAGTTAAT CTGAAAAGGTACTGTGTTGAATAATGCAGGTGTAGACATGGATATTTCCATGTGGTGAACAATGACTACACTCACTGGGA GATGTATGCTATTGGTGGAAGTGGTAACCCCACTATCAACAGCCAGGGCAACCGATACAATGCTCCTCTTAACCCTTTTG CCAAGGAGGTACAATGCTGTTAATCATGTTTTAGGGTGTGTTTGGGTAAACAACTTAATTAAGTGCTTATTACGATAAAA ACTTAATCATAAGTTATTTTGAAAAACATATTGCAATTAGCTCAAATTAAGTTATAAGTAGGTGATCATATAGCCGCGTA TTCATAAGCTAATAGGAGTCATTTATAGATCATAAGCTATTTATATAAACACTATGAAACTCTTGTACAAACACATATAC TATAAGATAAACTCAAATAAGTTGAGTTTCACATTGAATTTGCTGATTTATTGAGACAAATTGCTGTTGGCAGGTGACTA AGAGGGTGGAAACAGCTCAAACTGAGTGGAAAGGTTGGAATTGGAGATCAGAGGGAGACTTGCTGCTGAATGGTGCTTAC TTCACCCCATCTGGAGCTGGAGCATCAGCTAGCTATGCCAGGGCCTCTAGCTTAGGAGCTAAATCTTCTTCAATGGTTGG TACTATGACTTCTAATGCTGGTGCACTCGGTTGCCGCAGAGGCCGCTCCTGCTAGCAGAAGATCATCAACCATTTGAATG GAACCACAACCATTTGAATGGAACCACAACCATTTTTCTGTGTTTGGCTTTTCAGTTTTTTTTTTTACCATATTATAGTA GCGTCATATATCATATCCATTCATCATCTGCATTCTTGACAAGTGTACATTAATTGCACATGTCATCATGTTATGTTGTT ACCTTTTTTCTCAGTCCACATTGTGTGTTTATTGCTGGTCAACCTTAGCTGCTCGACTTGCTCCAGCTGAAACAAACAAT GCCATTGTAGGAGCAGGTGCAGAAGCGCGGTCCCGTTGTTTCTCTTTTTCTTCTTCTTTGGTCCTTCTCAGCTCATTTCA ACAAACTTTACCCACCAATTCATATGCATATTTTTCCAAGTGTCAAAATCATGTCCCCCTCACATACTTTTCAGTCTTTT TCAGTTTTTTTTTATAGGATTTGATATATATAAGTCTTTTTCTTTTTTACTTCTCTTTTGCTATTTTCTTACTCTTTGTT TTGCTGAGTTAATTATACGAGCAAAAGCATGATTGTCAAAGTTGAGCTATGGAAACACTTTATTAATGGTGATTATGGAA TAGCGATAGTAATGGTGTTCCTTTTTAACTTTCTCTCGCCTTTTTCCTTTGTCAATGGAGGTAATCTTTGCTCTTTTTGT TATGCAATTATGGTTGTATATCATTAAACATATCTGCCAGTGCTCGTTTCTCTACCAACATGTGTGATTCGTTCATGTGC AGCACATGATTCCCCGTAATTATATTTCTAATTAACATGATTACCCCTTTTTTAATCTTCCCCGTTTACCCTACAAAACA TAATAATGTAACGCTAGCTAAGGGCTAACAAGCTAAGCTAAGTTCTACCTTTTAAGATTTCTCTACCTTTTACTCTATTA TTTATTAAGGGTGTTTTTGGATAAACCATTTAATTGAGCGACTATGATAATAAGTGTTTCTCGCATAAGTATTTACCCAT AAGTTAATTTAAAAAATCTATTGAATTAACCTTAAAATAAGTTATAGGTAATGTAAACACGTATTCATAAGTTAATCGGA GTTGTTTATGAAAATAACCTCAGCTCATAGTAAGGTAACTCAAAATATTTACCAAGGTTTTTCCAACCAATTGTATAAGC GTTTATACTTTATACTGTCAGATAATCTCGACACACTCAAATAGGGCCTAAAATTTGGAACAAGACGAGATGATTTCATG TATCGTTTTACAGTAAATTTTGTTCCCCAACTTTTTCTGAAAGGGGCGTGCGTGCCTATAAAGACATGCTTTTGTAACAA TTTAAAGTCTCTAAAGTTCTCCAATAAAGTAATTGAAATTGAAGTAAGCTACCC
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0014200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCGTTACGTTGGAACCCGTTTTCTTCAGTCCATTCCACCATTCCCCTTTCTCTCTCTACCGACCCTTCTCTCTCTC TCTCTCTACATTCTCTCTCGTAAAAGCAAACACTGAGAGAAGAAGAGTGAAATCAATTTCAACAATGGCGATTTCTTCTT CTTCTTCTGCAAAACTGGTCCTCCTTGCTTGCTTCTTGTTGCTCCTTGCTGCTTCAGCAATGGCCGCACCACGCTTCTTC TCTTCTCAGCTCAGGAATGGTGAAGCTGAAGTTGAAACGCACAGGCTAGCGAGCTTCAACGACTCAACAATGGCGGTGAG GGCAAAAGAAGCTGAGGAATTGAATGAGCGTGCTGCGGTGGCTAACCCAGAGGAGGTTGCTTCAATGGTTGCGATGAACA TTCACAACAGCACTGAAAGAAGGAAGCTGGGATATTTCTCCTGTGGAACTGGTAACCCCATTGATGATTGCTGGCGTTGT GACCCCAACTGGCAGCAAAACAGGAAGCGCCTTGCCGACTGTGGTATTGGTTTTGGCAGAAACGCCATTGGTGGCCGTGA TGGAAAATTCTATGTTGTCACTGACTCCAGGGATGATGACCCTGTTAACCCCAGGCCTGGTACTCTTCGCCATGCTGTTA TCCAAGATAGGCCTCTCTGGATTGTGTTCAAGAGGGACATGGTTATCACGCTGAAGCAGGAGCTCATCATGAACAGCTTC AAGACAATTGATGGCAGAGGAGCCAATGTCCACATTGCTAATGGAGGGTGCATCACAATCCAGTATGTTACCAATGTCAT CATCCATGGCCTGCATGTCCATGACTGCAAACCCACTGGGAATGCTATGGTAAGAAGCTCCCCAACACACTTTGGGTGGA GGACAATGGCTGATGGAGATGCCATCTCCATATTTGGCTCAAGTCACATCTGGGTCGATCACAACTCCTTGTCCCATTGT GCTGATGGTCTTGTGGATGCTGTCATGGGCTCAACAGCTATTACAATTTCCAACAACCACCTCACCCACCACAATGAGGT GATCCTGCTGGGCCACAGTGACTCTTACACTAGAGACAAGCAAATGCAAGTGACCATCGCCTATAACCACTTTGGAGAGG GACTGATCCAGAGAATGCCACGGTGTAGACATGGATATTTCCATGTGGTGAACAATGACTACACTCACTGGGAGATGTAT GCTATTGGTGGAAGTGGTAACCCCACTATCAACAGCCAGGGCAACCGATACAATGCTCCTCTTAACCCTTTTGCCAAGGA GGTGACTAAGAGGGTGGAAACAGCTCAAACTGAGTGGAAAGGTTGGAATTGGAGATCAGAGGGAGACTTGCTGCTGAATG GTGCTTACTTCACCCCATCTGGAGCTGGAGCATCAGCTAGCTATGCCAGGGCCTCTAGCTTAGGAGCTAAATCTTCTTCA ATGGTTGGTACTATGACTTCTAATGCTGGTGCACTCGGTTGCCGCAGAGGCCGCTCCTGCTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0014200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAVTLEPVFFSPFHHSPFSLYRPFSLSLSTFSLVKANTERRRVKSISTMAISSSSSAKLVLLACFLLLLAASAMAAPRFF SSQLRNGEAEVETHRLASFNDSTMAVRAKEAEELNERAAVANPEEVASMVAMNIHNSTERRKLGYFSCGTGNPIDDCWRC DPNWQQNRKRLADCGIGFGRNAIGGRDGKFYVVTDSRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSF KTIDGRGANVHIANGGCITIQYVTNVIIHGLHVHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWVDHNSLSHC ADGLVDAVMGSTAITISNNHLTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMY AIGGSGNPTINSQGNRYNAPLNPFAKEVTKRVETAQTEWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSS MVGTMTSNAGALGCRRGRSC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 19 19 - –
Phobius
TRANSMEMBRANE
20 38 19 - –
Phobius
CYTOPLASMIC_DOMAIN
39 58 20 - –
Phobius
TRANSMEMBRANE
59 80 22 - –
PANTHER
PTHR31683
61 500 440 2.0E-275 –
PANTHER
PTHR31683:SF91
61 500 440 2.0E-275 –
Phobius
NON_CYTOPLASMIC_DOMAIN
81 500 420 - –
SUPERFAMILY
SSF51126
128 494 367 2.32E-105
IPR011050
Gene3D
G3DSA:2.160.20.10
151 493 343 3.7E-124
IPR012334
PRINTS
PR00807
174 191 18 1.5E-82
IPR018082
PRINTS
PR00807
198 223 26 1.5E-82
IPR018082
SMART
SM00656
226 423 198 1.1E-101
IPR002022
Pfam
PF00544
234 415 182 2.5E-20
IPR002022
PRINTS
PR00807
234 250 17 1.5E-82
IPR018082
PRINTS
PR00807
298 319 22 1.5E-82
IPR018082
PRINTS
PR00807
378 397 20 1.5E-82
IPR018082
PRINTS
PR00807
400 419 20 1.5E-82
IPR018082
PRINTS
PR00807
442 466 25 1.5E-82
IPR018082
PRINTS
PR00807
471 494 24 1.5E-82
IPR018082

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0014200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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