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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0014900 |
| Transcript ID | LotjaGi6g1v0014900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle-associated membrane protein, putative; TAIR: AT1G04760.1 vesicle-associated membrane protein 726; Swiss-Prot: sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726; TrEMBL-Plants: tr|I1NEG8|I1NEG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0014900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:2686012..2688811) extracted from Lotus japonicus Gifu genome v1.2.
CACAAATCAATATTATTCTCACATCTGTTACTCTCAATTTTATCTCTTGTTCTCTCTAGCCCCCTCTCTTCATAACTCTC TTCAAGTTTTGAGATTCGTTTATGGTTTCTAGAGATGGGGCAACAAACTTTGATCTATAGTTTTGTGGCTCGTGGGACAA TGGTTCTTGCAGAGTTCACAGAATTCTCAGGAAACTTCACATCCATTGCCTGTCAATGCCTTCAGAAACTTCCTTCTTCC AATAACAGATTCACTTACAATTGTGATGGCCACACGTTCAATTACCTTGTTGAAAATGGCTTCAGTAAGTTATATATTTT GAATTTGCATATATCATGTTTGATGGATTATATGGACTTTTCTTTTCATGCAGATCTTGTTATTTCTATTTGTTATTTAC CCTTCTTTTCTCATCAATTTGTGTAATTTTGAAAAAAATAATGCTACAATGTGAGTTATAAGGAGACAAAGTAATAGCAA GAAAATGATTATCCTTCCCTGAACCTCTTTGATTTAGCTTACTATTTTATATCAATAATTTAGTTGTCTATGTTATAGGT GGTCAATTTTCTTGTTTCTTTTTGTTTACATTTTCTTTTGTTTTTACAGAAAATTAAATAATAGATGGATGTATACGGAA ACCTGGCAATTCAATACTCCTAGAAACATTTAGAAACATTTAGAGGAGTTTTTTCATGCATATATACATATCACACCTAA ACATCAAACATGGTGGTATTCTTATTCTCAAACAACCAATTATTCCTATTGAAAAAAAGCCATATAAATGATTTTTATAT TATTAATTCTAACATGTCCCCACACTTAAGAGCTTATTTGGACTTGAAGCACCGACCCTCCTACCTTGTGCTTTAATTCA AGAAATTTATTGAAAAAATTAGGGACGACAATGATCAAACTCTAGACCGCTTGATCCTAGAAGTTCTAATACATCAAACA ACAAATTATCCCAAAAGCTTAAGCTATTGGGTAAAAGCCACACAAACTGTTTTATAATATTTCAAACCTTTTCTCTTTAC ACAAATAAATATGAATGTATGATTCTGTCAAAACTTGCTTCAATATGCTTTTGTTTTACTTTTATTTATAATAAAACATT AACTCTGTTTTTTTCTTATCATAAGAGTATTATAAATATCAAAAGCAAAGTTCCCCTCTATTTATCACATGTATTTTATG TATTCCATTTTGTGTTCTTTCCCCATTTGCTTTCTATTAAAATTTAAGGATTGTTCATGACTTGCAATGTAACAATTTAG GGGCAAGTATGAATGAGATTATACCTATATAGAAGTAATACAGAGAATAAAAGTTAATCAAGTTCTTCATAAATCAATTT CATTACTTTGTATGGATTTTATTATAATATTTTTATTGTTTTGGATTTTGCAGCTTACTGTGTGGTCGCAGTTGAATCTG CTGGTAGACAGATCCCTATTGCCTTTCTAGAGCGTGTCAAGGAAGAATTCAGCAAAAAGTATGGTGGAGGCAAAGCTGCA ACTGCTTCAACTCACAGCCTAAACAAAGAATTTGGGTACCTAATTTTTAAAGCCAAAATTATTTGATGATTATGTTGTAT CATCGCCAAAGTTTCAAATTTGATCCTCTGTAGAGGAGCTTGGTTTTTCAATCAATGGCTATGATTAATTTTAAATAAAA AATAACTTGTTAAATTAAATAGTTTATGACAATTTACCACATTGCAAAGGCAACATAGATTAGAAAGAATCTGAATTCCA CAACAATATTGCAAATTGATAACAATTTACTAGTTTATATTTAGAATTATTTTGAATTTAAGACTGATTCACGTTTACGT AACAAAATTATACTTTTCGAATGATGTGTTGAGATGAGATGTATGTTTCCACAAGCACTTAAACCCACTAAAAACTGTGC TAAATTTACATGAAAATCTACAGGCCTAAATTGAAGCAACAAATGCAATATTGTGTTGATCATCCTGAAGAGATCAGCAA GCTTGCCAAAGTGAAGGCTCAAGTTTCTGAAGTCAAAGGAGTTATGATGGAAAACATTGAGAAGGCAAGACATTTACACA TAACATACCTTGGATTTTTCGAGTAAAATTATTGAGTCATAATTCATCATGCTTATATTATTTGGATTCAAATATTTCAT TTTCTTTGTAGGTTCTTGACCGTGGAGAAAAGATTGAGATGTTAGTGGACAAGACTGACAACCTTCGATCACAGGTTAGT GCATGAAATGTTTCATTTTCATTTGTTTTATTTAATCATAAGGCATAATCCAACTATGTTAATAAACGAATTGACATTTT TGTGTCACTTGTTGCAGGCACAAGATTTTAGAACACAGGGCACAAAGATGAAAAGGAAGATGTGGGTTCACAATATGAAG ATCAAGTTGATTGTTTTTGGCATCGCCTTAGCATTAGTTTTGATAGTGTTCATGTCAATATGTCGTGGCTTCAGTTGCTT ACATTAGTTTAGCAAGATTTAATCTATTACATTTGTGCCCAGTTCTAATTTCATTAACAACTCTTTAGTTTACATGATTC GAATTAGGAGCTGGATCTGTACAACATTTTTTGACTGATGGTTGCCAAAAATTACATGTACAGAAATATTATCTTAATTA TAGAGTTTGTGGCTATTTATGATATATCAAGTTCTTCTTCCAAAATATGAGCTTGGTGATGCTCTTACATTCTCCACAGT GGTGCGCGGTCCAGAGATAATCTTCCAACACTGTGTTGTGGTGTTGATATGTCAAGGAGGTATATGAAATATTCTCTGAT
CDS sequence (LotjaGi6g1v0014900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGCAACAAACTTTGATCTATAGTTTTGTGGCTCGTGGGACAATGGTTCTTGCAGAGTTCACAGAATTCTCAGGAAA CTTCACATCCATTGCCTGTCAATGCCTTCAGAAACTTCCTTCTTCCAATAACAGATTCACTTACAATTGTGATGGCCACA CGTTCAATTACCTTGTTGAAAATGGCTTCACTTACTGTGTGGTCGCAGTTGAATCTGCTGGTAGACAGATCCCTATTGCC TTTCTAGAGCGTGTCAAGGAAGAATTCAGCAAAAAGTATGGTGGAGGCAAAGCTGCAACTGCTTCAACTCACAGCCTAAA CAAAGAATTTGGGCCTAAATTGAAGCAACAAATGCAATATTGTGTTGATCATCCTGAAGAGATCAGCAAGCTTGCCAAAG TGAAGGCTCAAGTTTCTGAAGTCAAAGGAGTTATGATGGAAAACATTGAGAAGGTTCTTGACCGTGGAGAAAAGATTGAG ATGTTAGTGGACAAGACTGACAACCTTCGATCACAGGCACAAGATTTTAGAACACAGGGCACAAAGATGAAAAGGAAGAT GTGGGTTCACAATATGAAGATCAAGTTGATTGTTTTTGGCATCGCCTTAGCATTAGTTTTGATAGTGTTCATGTCAATAT GTCGTGGCTTCAGTTGCTTACATTAG
Protein sequence (LotjaGi6g1v0014900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGQQTLIYSFVARGTMVLAEFTEFSGNFTSIACQCLQKLPSSNNRFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIA FLERVKEEFSKKYGGGKAATASTHSLNKEFGPKLKQQMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIE MLVDKTDNLRSQAQDFRTQGTKMKRKMWVHNMKIKLIVFGIALALVLIVFMSICRGFSCLH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 193 | 193 | - | – | |
| PANTHER | 1 | 221 | 221 | 4.4E-137 | – | |
| PANTHER | 1 | 221 | 221 | 4.4E-137 | – | |
| Gene3D | 2 | 128 | 127 | 1.4E-45 | – | |
| SUPERFAMILY | 6 | 121 | 116 | 2.9E-28 | ||
| CDD | 7 | 121 | 115 | 4.12257E-33 | – | |
| ProSiteProfiles | 10 | 114 | 105 | 28.549 | ||
| SMART | 31 | 113 | 83 | 3.4E-26 | ||
| Pfam | 34 | 110 | 77 | 1.1E-22 | ||
| SUPERFAMILY | 125 | 192 | 68 | 1.2E-23 | – | |
| Pfam | 129 | 214 | 86 | 1.5E-32 | ||
| Gene3D | 129 | 214 | 86 | 2.3E-29 | – | |
| CDD | 130 | 188 | 59 | 6.9642E-28 | – | |
| ProSiteProfiles | 130 | 190 | 61 | 19.027 | ||
| PRINTS | 135 | 154 | 20 | 2.3E-19 | ||
| ProSitePatterns | 148 | 167 | 20 | - | ||
| PRINTS | 155 | 174 | 20 | 2.3E-19 | ||
| PRINTS | 191 | 210 | 20 | 2.3E-19 | ||
| TMHMM | 194 | 213 | 20 | - | – | |
| Phobius | 194 | 213 | 20 | - | – | |
| Phobius | 214 | 221 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi6g1v0014900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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