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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0026800 |
| Transcript ID | LotjaGi6g1v0026800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | INO80 complex subunit C; TAIR: AT4G38495.1 chromatin-remodeling complex subunit; Swiss-Prot: sp|Q8BHA0|IN80C_MOUSE INO80 complex subunit C; TrEMBL-Plants: tr|I3SJK2|I3SJK2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0026800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:4720291..4723165) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAGCAGAGGTAGTGGACGCTGAGCTAGTGCTGCCGAATTACCTCAGTTTTAAGAGAGTTCAGATGCATGAGAAATA CCCTAAAGGCCAATCTAGAGGGAGGCACTGGAAACATCTTAAGCAGATTATTCAAGCTGAGAATTATCAGAATTACCCTC CTGATCAACCCAATTGTGAGATTTCACTCACACCCATTATCTGTTTATGCTTTGTTATGGAAAATTGTTTTGTAGTTTTG TTTCTTGGAAGTTTTGGTGGGTTGTTTAAGAACAATTTGTGTTGTTGGTTGAACTTTAAGTGAGAAGTCTTACTATCAGA AGTAGAGTGATGGTTTAGTTTGCTATTTTGGCCATAAATTTGAAAGAGATTAGTTGGAGGCTATTTGAAATTTTGAATGG CTGGGGGTAGGGTAGGGTTTTAAATTGTGGATCCTGTTGCGTTGCGGAGTTGCAGACAAATGCATTTTGATGCAGCCGTC ATTGTAGGACGTGATGCCGTTGTCCAAAATTCGGTTGCAATTGCGGGTGTGGACCGCAATTTAAGGGTGGCAGGGAAATT GGTTGTATCAGGATCCCTGAATTTTCTGTGTGATAGACTGGTTGCATGATTTCTCTTTAGTTATTACTCATGAATGTTTA AGTACAGTCTATCTCCAATGTAAAGAGAGATGGAGCTACCACTGTGCTACTGGTTACTCCTTTTTTCTCTAAGGATATTT CTTCTTTTATATTAATAAGAAAAAAATAATGGAAGAATTTTTAATTGTTCAAACTCAGTGCTGGAGACTCATAGTCCAAT TCCACTTTTCCCCCATGTTATGTTTACTATTCATGTCAAAGCATTTAATTGTTTATCTTTTTTATTGGTTGGATTGTCTT GCAGATGTCAATATTGAGTCACCCCCCTCCATGCATCCCTGCAAGAGAATTTGTGATATTACAGGCTATGAGGTATGTAG TTATGTTGATTATTCTTCTTGAGTGGTATTTTGCTGAATACGGTTATTATTATTAGCCATTACACTTCTTAGAATAAGTT TTAGCAAAATAACTCTGGTTTACAAGGACAGAAAGTGGTTTGCATTTGTGAAACAAGTTTGCAAAATTTTGATTTAAAAG GCCATTCTCACCCTTTTATGTAGAAACTATGAAACTAATTATGTTCCATCTATTTCTTGTCACTGGAAATACTTTAACAT CTTATTGAATCTATATAGCATATAAATCTCAAATAATCACACACATCTCGCTTTTGTGCTAACTTTCAAAATTTGTGATT TTATCTTCATGTTACGTTGAAAATTTAGCTTACTTTGTCTTCTTATGGCTTAGTGCTAAGAACTATTGATTCTCATCTTA GGATGCTCGACAAACTACTCAAAAGTAAACATTGGTGCAGTTCCTTGTTCGGCAATAATACCTATTAGCTAGCATAGCCT TTTTATTTTCCCGACAGACTAGTCAAAATTAAACATCTCTGCAGTTCCTTGTCGTTCAACAGTAATAGCTATTGGCTAGC ATAAGCTGTTTATTTTCCCCATCTTCCTGCTCAGAACTTTGAACACAACAGCTACCTTTAGAGTTTAGACTAATTCATTT CAGCCAAGCTAATAAAATATCAAGTGAACAATAGGAGATATGAGACATTGCATTTGAATGCCTACAACATTTACTTTAAT TGTCCATGTTGCTTTTGATAAATGATCTCATTGTCAATAATATTTCTCAAAATCTGGTTTCTGATCGAGCTCAATGGTTT AGTGTGGTCCATATAGCCGACCTCATTTAGTGGGATAAAGTTTTTGTTGTTGTCCATGGTGCTTTTATCTTCAGCAGTTG CAACTCAATATAGCAGCCATTGAATTTTTCACTGCTGAGATGAAGCTCTTTAATGTTCTACTATCTATGTTTCAGACACA CATCACTAAGATTGTTTAAAGGGTTGAATCTGTGTTAGCGTATTATGTTCATTTTTCAATATTCTGAGCTTTAGCTTTCT TAGTTTGATAAGTACAGGGAAGATAAGACATGATTCATTGTACATCACATCAGATTCAGAATTTTGCACTGAAATGTGTT CAACCTGACCTAGTTTAAAAGCACAGGTCTGGTTGAGGTTTAGATCTTTCATCTTTGTTGATACTCGTGGGAAATTAAGA ATTTTTCTAGTTTGGAAATAGGTGAATATTGTGAGGAATTTCTATAGTGCGTTATCTATCTTCTCTTTGTAATTCTCTTT CTCCTTGATCCAAAGACAGAACGCTCCAAATGAATTGAATAAGGAATACTTGATTGACTCAACTGCCTGAATAATATCTG ATATGTCTCTCATCTTATCAAGTCGTAGTGCTTTAACTTGATTTCTTTGTCGTCTATAGCTTGGTTTTGGTTTGTTTAGA TGTCACGCCAATGTCTTTTCAACATCTTCTTATTATGCAGGCTTAGCTTAAATATAGTTTAATCTTTTTAACTGAATTGG CTACATGCTAAAAAAACTTACATATGGAATTTGTTTATGGATTTTATATTCGCTTGGTGTGGATTACCTTAGAATTTGGG TTAGACTCTACCTCAAAAGCTAGCTTAGGGTGAGAATTGCTCTGCCCTATAGTAAAGCATAGTTTGGCCATATCTCTAGT CAATGTTGGACCTGAACAAAATGTCTCTCTTTTTATTTAATTAATTGAGGATGTTTATTAGTATTCTTATACTAGAGAAC TAATTAATTAGTTTACCCTGCAGGCACCTTACTATGATCCTAGGACTACCCTCCGATATGCAAACACCGATGTTTTCAAG ATCATCAGGGCGCTTCCTAATGATTATGTGCAGAGATACCTAGCTCTAAGAAATGCAGCAGTAGTTCTCAAGTAG
CDS sequence (LotjaGi6g1v0026800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCAGAGGTAGTGGACGCTGAGCTAGTGCTGCCGAATTACCTCAGTTTTAAGAGAGTTCAGATGCATGAGAAATA CCCTAAAGGCCAATCTAGAGGGAGGCACTGGAAACATCTTAAGCAGATTATTCAAGCTGAGAATTATCAGAATTACCCTC CTGATCAACCCAATTATGTCAATATTGAGTCACCCCCCTCCATGCATCCCTGCAAGAGAATTTGTGATATTACAGGCTAT GAGGCACCTTACTATGATCCTAGGACTACCCTCCGATATGCAAACACCGATGTTTTCAAGATCATCAGGGCGCTTCCTAA TGATTATGTGCAGAGATACCTAGCTCTAAGAAATGCAGCAGTAGTTCTCAAGTAG
Protein sequence (LotjaGi6g1v0026800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAEVVDAELVLPNYLSFKRVQMHEKYPKGQSRGRHWKHLKQIIQAENYQNYPPDQPNYVNIESPPSMHPCKRICDITGY EAPYYDPRTTLRYANTDVFKIIRALPNDYVQRYLALRNAAVVLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 124 | 123 | 2.0E-57 | ||
| SMART | 73 | 102 | 30 | 6.9E-12 | ||
| Pfam | 74 | 102 | 29 | 6.8E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Chromatin remodeling | Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. | ||
| Cellular component | Ino80 complex | A multisubunit protein complex that contains the Ino80p ATPase; exhibits chromatin remodeling activity and 3' to 5' DNA helicase activity. |
Expression pattern of LotjaGi6g1v0026800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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