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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0027900 |
| Transcript ID | LotjaGi6g1v0027900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat receptor-like protein kinase; TAIR: AT3G17640.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|Q00874|DR100_ARATH DNA damage-repair/toleration protein DRT100; TrEMBL-Plants: tr|G7J831|G7J831_MEDTR LRR receptor-like kinase family protein; Found in the gene: LotjaGi6g1v0027900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:5006690..5008580) extracted from Lotus japonicus Gifu genome v1.2.
GTAAATTTTTTTTGAAAATCAATACATCAATTAAGACTTTCTTAATAAGCGTAATTTTTACAACTTTAACTTATAATTAA GAACGGAGGGAGTACATTAAGTAGATAGTTCAATAGACACCGCATATCTCTATATAATATTTCTCTTCTATCACAAATCA AATCAGATATATTACTTCTCTATTTTCTTCACTTCTCATTCTAATGAATGTTTGGTCTATGTATATATTAGCAAATCATT TTCAAAGACAAAATCCTTAAAATTATCAAACACCAACCAAACCTCTAATAGCTCTGTCCATTTTCCACACTCCTCAGTCC TCAGTCCTCACACTTCGCATCACCTTCCTTCTGCTTTCAAACACACTGATCATTTAACACTCACAGTTCTGAATGAATGG CCACCTTTTTCTACTTACATTGCTTTCTTCTTCTTCATCTTCTTCTATTTTCATCTTTCTCTGTTCAAGCTCAAGAGTCT AACCACGAAAACATGAACCCATCTGATCTGAAAGCTCTTCTTTCCATCAAGAACACTCTCACCGAACTCTCATCCGCGAA ACCCTTCTTCTCCACCTGGAACCTCACCGCACCTGATCCCTGCTCCTCCTTCTCCGGCGTCACCTGCACATTCTCCCGAG TCACCATCCTCTCACTCGGCGCTGACTCACTCCCACTCGCCGGATCACTCCCTCTATCAATCTCCTCACTCACCGAGTTA ACCCAGCTCATTCTCTCCCCCGGAATCGTCACCGGTTCCATCCCACCCCAACTCGCCCGACTCACCAAGCTCCGAGTCAT CTCCTTACCCAACAACCGCCTCACCGGAACCATCCCCTCTACGTTCTCCTCCCTCACCAACCTCCACACCCTCGACCTGA GTCACAACCAACTCGCCGGGTCAATCCCGCCGAGCCTCACCGAGTTGCCACAACTCAGAGTCCTCATCCTCGCCTCCAAC TCACTCACTGGGCCGTTACAAAGTTCCGTTTCCTCGCCGTTACTTCACCTGGATTTCAAGAACAACAAACTCACCGGACC GTTACCACCGTCACTTCCGTCATCTCTCCGTTATCTGTCGCTTTCGAAGAACCGAATGTGGGGCCCTCTCCCCAACGGCT TAGAGTCACTCTCAGAGTTAGAGTTCCTTGACCTTAGCATGAACCAATTCAGTGGGCCCATCCCGGCCCAACTATTCTTC AGGCCCACCTTGTCTTCACTCTTCTTGCAACGGAACAATCTCTCTGGTGGGCTTCCACGTGGGCCTGGGCCCGACAATAG ACAACCATCGATCGGGTCCTCATCGTACGGTCAAGGATCAATCGTCGATCTGAGCCATAACTCGTTAAGCGGGGAGCTTT CAACGGTGTTTGATGGGGTCGAGAGCTTGTTCTTGAATAACAACCGTTTGATGGGGAGTGTGCCTGAGGAGTATGTTAAG AGCGTGTGCCGGGGCAGCACCAGAACGCTGTACCTTCAGCACAATTTCTTCACGGGGATTCCGTTAGAAGCGGGGACGGT GTTGCCGGATACGGCGTCGTTGTGCTTGTCTTACAATTGCATGGAGCTTCCGCCGGCGGTGATGACGTGTCCGGCCAGTT CCGGGGAGGAAATGTCAAGGCCGACAACGCAATGTTCTGTCTTTCAAAAAGGCAGCAATGGAGGCTAATTGTAATGGTGT TATTAATGGATCGAGGACACAGGACACCTCAATTTTCTGTATTATTATTTTACTTATTGATAATTTAAGCTGTAATATGT ATTTTATAAAGCAATAGTAGTGAAACGTACAAAATTTTAGCTGATTTTGTGTATTATAATTTATGGGGTTTTCTAAATGA CCCATAGTGAAAATTGGGTTAAATAACTCATGTTCTATGTGGACCAATCAC
CDS sequence (LotjaGi6g1v0027900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACCTTTTTCTACTTACATTGCTTTCTTCTTCTTCATCTTCTTCTATTTTCATCTTTCTCTGTTCAAGCTCAAGA GTCTAACCACGAAAACATGAACCCATCTGATCTGAAAGCTCTTCTTTCCATCAAGAACACTCTCACCGAACTCTCATCCG CGAAACCCTTCTTCTCCACCTGGAACCTCACCGCACCTGATCCCTGCTCCTCCTTCTCCGGCGTCACCTGCACATTCTCC CGAGTCACCATCCTCTCACTCGGCGCTGACTCACTCCCACTCGCCGGATCACTCCCTCTATCAATCTCCTCACTCACCGA GTTAACCCAGCTCATTCTCTCCCCCGGAATCGTCACCGGTTCCATCCCACCCCAACTCGCCCGACTCACCAAGCTCCGAG TCATCTCCTTACCCAACAACCGCCTCACCGGAACCATCCCCTCTACGTTCTCCTCCCTCACCAACCTCCACACCCTCGAC CTGAGTCACAACCAACTCGCCGGGTCAATCCCGCCGAGCCTCACCGAGTTGCCACAACTCAGAGTCCTCATCCTCGCCTC CAACTCACTCACTGGGCCGTTACAAAGTTCCGTTTCCTCGCCGTTACTTCACCTGGATTTCAAGAACAACAAACTCACCG GACCGTTACCACCGTCACTTCCGTCATCTCTCCGTTATCTGTCGCTTTCGAAGAACCGAATGTGGGGCCCTCTCCCCAAC GGCTTAGAGTCACTCTCAGAGTTAGAGTTCCTTGACCTTAGCATGAACCAATTCAGTGGGCCCATCCCGGCCCAACTATT CTTCAGGCCCACCTTGTCTTCACTCTTCTTGCAACGGAACAATCTCTCTGGTGGGCTTCCACGTGGGCCTGGGCCCGACA ATAGACAACCATCGATCGGGTCCTCATCGTACGGTCAAGGATCAATCGTCGATCTGAGCCATAACTCGTTAAGCGGGGAG CTTTCAACGGTGTTTGATGGGGTCGAGAGCTTGTTCTTGAATAACAACCGTTTGATGGGGAGTGTGCCTGAGGAGTATGT TAAGAGCGTGTGCCGGGGCAGCACCAGAACGCTGTACCTTCAGCACAATTTCTTCACGGGGATTCCGTTAGAAGCGGGGA CGGTGTTGCCGGATACGGCGTCGTTGTGCTTGTCTTACAATTGCATGGAGCTTCCGCCGGCGGTGATGACGTGTCCGGCC AGTTCCGGGGAGGAAATGTCAAGGCCGACAACGCAATGTTCTGTCTTTCAAAAAGGCAGCAATGGAGGCTAA
Protein sequence (LotjaGi6g1v0027900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATFFYLHCFLLLHLLLFSSFSVQAQESNHENMNPSDLKALLSIKNTLTELSSAKPFFSTWNLTAPDPCSSFSGVTCTFS RVTILSLGADSLPLAGSLPLSISSLTELTQLILSPGIVTGSIPPQLARLTKLRVISLPNNRLTGTIPSTFSSLTNLHTLD LSHNQLAGSIPPSLTELPQLRVLILASNSLTGPLQSSVSSPLLHLDFKNNKLTGPLPPSLPSSLRYLSLSKNRMWGPLPN GLESLSELEFLDLSMNQFSGPIPAQLFFRPTLSSLFLQRNNLSGGLPRGPGPDNRQPSIGSSSYGQGSIVDLSHNSLSGE LSTVFDGVESLFLNNNRLMGSVPEEYVKSVCRGSTRTLYLQHNFFTGIPLEAGTVLPDTASLCLSYNCMELPPAVMTCPA SSGEEMSRPTTQCSVFQKGSNGG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 25 | 7 | - | – | |
| PANTHER | 25 | 415 | 391 | 1.3E-87 | – | |
| PANTHER | 25 | 415 | 391 | 1.3E-87 | – | |
| Phobius | 26 | 423 | 398 | - | – | |
| Gene3D | 29 | 198 | 170 | 2.5E-38 | ||
| SUPERFAMILY | 34 | 287 | 254 | 4.56E-44 | – | |
| Pfam | 35 | 77 | 43 | 1.2E-8 | ||
| SMART | 129 | 152 | 24 | 130.0 | ||
| ProSiteProfiles | 131 | 154 | 24 | 5.371 | ||
| Pfam | 131 | 190 | 60 | 1.5E-11 | ||
| SMART | 153 | 177 | 25 | 3.7 | ||
| ProSiteProfiles | 155 | 178 | 24 | 7.727 | ||
| PRINTS | 156 | 169 | 14 | 4.0E-5 | – | |
| ProSiteProfiles | 179 | 201 | 23 | 4.593 | ||
| Gene3D | 199 | 290 | 92 | 1.6E-19 | ||
| ProSiteProfiles | 223 | 246 | 24 | 5.232 | ||
| SMART | 245 | 269 | 25 | 40.0 | ||
| PRINTS | 245 | 258 | 14 | 4.0E-5 | – | |
| ProSiteProfiles | 247 | 269 | 23 | 5.117 | ||
| MobiDBLite | 283 | 304 | 22 | - | – | |
| Gene3D | 301 | 389 | 89 | 2.1E-8 | ||
| SUPERFAMILY | 309 | 391 | 83 | 2.27E-8 | – | |
| ProSiteProfiles | 354 | 375 | 22 | 5.094 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0027900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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