Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0031300 |
| Transcript ID | LotjaGi6g1v0031300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT5G56340.1 RING/U-box superfamily protein; Swiss-Prot: sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1; TrEMBL-Plants: tr|A0A151U8J5|A0A151U8J5_CAJCA RING finger protein 115; Found in the gene: LotjaGi6g1v0031300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:5878962..5881731) extracted from Lotus japonicus Gifu genome v1.2.
CTAAACTTTCCTCTATATAAAATGGGGTGGGATGTAGATTTTAGATAAGAATGAGGTGGAGTGTAATTCTAACAAACCTC AAGGGGGTGAGTGTACTTTACTCTAAAAACAATGAGATGGAAAAGTGGTTTTATATTTTAAGAAATCAAAACATTTGAAG AAGAAGAAACAGCGCAATGAGGTAAGACGCGGTTGGTATTGGACGATCCTTTTGTGGCACGACACGAGAGGAGGATTTTC TTGTTCTTCAACTCGGCCTGCCAAAATCCTTCTTCTTCTTTTCTTGCTTGCATCTTCCGCTGCCTGCAACCAAAACCCAC AGCATCAATTTTGGTACGTTTCTGCTCTCAATCTCAAAATTTCACATGCCACCGTTCTTTCTTTCTTTCTTTCTTTCTTT CTCATGAATTAAATACCATTTTATCTTTAATTAATTAATTGTTTATATTGCGTGCCGAACATGATCACGTTGCATTTTGC ACCTTCTGCGATCCTTCATTCAATGTCAACTATCTATAATTTTCCATAGTCAATGTCTAATCAACTCTTCTAGATTCTTC TTTTAATCACCTGAATTTTAGGTATTTATTTATTTTGTTTTGTTTTGAACCGATCCGTGTTATTTTCTTGCTTTTCATAA ACCCATCACCCATCAAATTATTGTAGCTGCTGCAGTGCTGCTGCTAGTTTTGTTCTTCTTTTGTTAAGGTGATGTTTCCC TTTTATTTTTGTTGATGATTTAATTTGTGACGATTTTAGATTTGCTTAGGTTTTTGATTTTGTTTTGTCTGGATTCTGCT TATTTTGTTGGTGAATAAAGAAAAAATAAATAATTTTTTTTGCTTTTTGGTTCATGGGTTTTGTTCTATTAATGAAATTA TGGGTTTTTGATTGCTAGAGTAATGAAATTATTTCATAAGAATGAATGCTTTTGTTTCCCTCTGAATGGCGATAGTTGAT ATGATGAATTCGTGGTGGCGAGTTTTGAATTTTCTGTATTCAGGCTTTTGATTCGATTCGAAATTGTGCTGATTTCACTT TTATTGTATCAGTAAGCAAGGAATAAAGCATCGTGATTTTATTGGAGGACGCGTTGATAAACGGAACATTATGGAGGAAG TGACGGTGGCAAGATATTGGTGTCATATGTGCTCTCAAAGGGTCAATCCCATCATGGGAGTGGAGATGAAGTGCCCATTT TGCCAAAGTGGATTTGTTGAAGAAATGGGTAACAACCCCGCCGGTAGTGGTAGCGACCTTCACAACACCCCAGAACCTGA TTTTGGATCCGATCGGGCTCTCTCCCTCTGGGCACCGATCTTGCTAGGCATGATGGGAAACCCGCGTCATCGTAGAAGAC TGAGCCTGAGACGGTTAGAACTTGATGATGATGATGACAATGATTATGGTAATCGTGATGATGTTGTTGGTGTAGCACGC CATGGTGGAGAAGCTGAATATGATAGAGAGCTTGAGTCCATACTTAGGAGGAGAAGGAGAAGCTCAGCTACCATTCAACA ACTGCTCCAAGGCATAAGAGCTGGACTGGCATCTGAATCAAACGAGAATGCTGACAGTGATGACCATGGTCATGCGAGAG AAAGGGAAAGAGAGCGTGTGATCTTGATCAATCCCTTTAATCAGACTATTATTGTTCAAGGCTCCTATGATTCAAACCGG GATCAGGGTGATAATCATGGCCCCATTGGGTCTCTAGGGGACTATTTCATAGGGCCTGGTTTGGATTTGCTGTTGCAGCA TTTGGCTGAGAATGATCCCAACAGGCAAGGAACTCCACCGGCACAGAAGGAGGCTGTTGAAGCTCTTCCTACTGTGACCA TCAATGATAATTTGCAGTGTTCGGTGTGTTTGGATGATTTTGAAGTGGGTTCTGAAGCTAAAGAGATGCCTTGTAAACAT AGGTTTCATAGTGGATGTATCCTTCCCTGGTTGGAGCTTCATAGTTCATGTCCAGTTTGCAGGTTTCAATTGCCAGCAGA TGAATCTAAGCAAGACTCTGATGTGTCAAGGAATAGCGGTAGTCAAAGGGAGGGTGAAAATGTTGGACATGAAGACAATG CTGAAGAAGTAGATGATGATGTTGTAGGGAGAAATGGAAGTGGGAGTAGAAGATTCTCATTTCCATGGCCTTTCAGTGGA TTGTTCTCCTCATTAAACTCTTCTTCATCTTCTAGCCGCCATGGAAACGGAGATGGTACTCAATCAGAAGACAACAACTG AGTTTTCTTGCATATATGTGGTGTTATTCATCATATGCTGCCTTGCTTATGTACAGAGTCCTCCAATTAAAGGATCAAAT GTTGAGAGAACAAGTTATGATTTTTCAGACGTCTTTGGTTTTGCTAAATTCTGTGGGGCAGTTGCTATATTTCCTTCAAC TTCTACCATTCAAATTGGTGTCTGTATAATAGTCGTTGGTGATTTTATTTTCCCATATCGTTAATATGTATTGCATTGAT ATGTATAGATTATATATTAAGCCTGGCTCTTAAATTTCATACTTGTAAAATTAATTTTTATAGGCCAACTCATGGATTAT ATCCGTGAAGGCCCTGTTGCACTTAAACTTAGCAATTGGTCAAAATGTAAATTATCTGATGAATGATGACTCATGATACG GTCATGTGTGTGTTTTACTGAACCGTTATAAGATATGCTATACTCAATGGCAGAGAGTGTTGGATTTTAATGAGACAACA TAAGAAAAAAGTTGGAGTAAAAGAAATGAGAAGGTTAAAATGAATGAGTC
CDS sequence (LotjaGi6g1v0031300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAAGTGACGGTGGCAAGATATTGGTGTCATATGTGCTCTCAAAGGGTCAATCCCATCATGGGAGTGGAGATGAA GTGCCCATTTTGCCAAAGTGGATTTGTTGAAGAAATGGGTAACAACCCCGCCGGTAGTGGTAGCGACCTTCACAACACCC CAGAACCTGATTTTGGATCCGATCGGGCTCTCTCCCTCTGGGCACCGATCTTGCTAGGCATGATGGGAAACCCGCGTCAT CGTAGAAGACTGAGCCTGAGACGGTTAGAACTTGATGATGATGATGACAATGATTATGGTAATCGTGATGATGTTGTTGG TGTAGCACGCCATGGTGGAGAAGCTGAATATGATAGAGAGCTTGAGTCCATACTTAGGAGGAGAAGGAGAAGCTCAGCTA CCATTCAACAACTGCTCCAAGGCATAAGAGCTGGACTGGCATCTGAATCAAACGAGAATGCTGACAGTGATGACCATGGT CATGCGAGAGAAAGGGAAAGAGAGCGTGTGATCTTGATCAATCCCTTTAATCAGACTATTATTGTTCAAGGCTCCTATGA TTCAAACCGGGATCAGGGTGATAATCATGGCCCCATTGGGTCTCTAGGGGACTATTTCATAGGGCCTGGTTTGGATTTGC TGTTGCAGCATTTGGCTGAGAATGATCCCAACAGGCAAGGAACTCCACCGGCACAGAAGGAGGCTGTTGAAGCTCTTCCT ACTGTGACCATCAATGATAATTTGCAGTGTTCGGTGTGTTTGGATGATTTTGAAGTGGGTTCTGAAGCTAAAGAGATGCC TTGTAAACATAGGTTTCATAGTGGATGTATCCTTCCCTGGTTGGAGCTTCATAGTTCATGTCCAGTTTGCAGGTTTCAAT TGCCAGCAGATGAATCTAAGCAAGACTCTGATGTGTCAAGGAATAGCGGTAGTCAAAGGGAGGGTGAAAATGTTGGACAT GAAGACAATGCTGAAGAAGTAGATGATGATGTTGTAGGGAGAAATGGAAGTGGGAGTAGAAGATTCTCATTTCCATGGCC TTTCAGTGGATTGTTCTCCTCATTAAACTCTTCTTCATCTTCTAGCCGCCATGGAAACGGAGATGGTACTCAATCAGAAG ACAACAACTGA
Protein sequence (LotjaGi6g1v0031300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEVTVARYWCHMCSQRVNPIMGVEMKCPFCQSGFVEEMGNNPAGSGSDLHNTPEPDFGSDRALSLWAPILLGMMGNPRH RRRLSLRRLELDDDDDNDYGNRDDVVGVARHGGEAEYDRELESILRRRRRSSATIQQLLQGIRAGLASESNENADSDDHG HARERERERVILINPFNQTIIVQGSYDSNRDQGDNHGPIGSLGDYFIGPGLDLLLQHLAENDPNRQGTPPAQKEAVEALP TVTINDNLQCSVCLDDFEVGSEAKEMPCKHRFHSGCILPWLELHSSCPVCRFQLPADESKQDSDVSRNSGSQREGENVGH EDNAEEVDDDVVGRNGSGSRRFSFPWPFSGLFSSLNSSSSSSRHGNGDGTQSEDNN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 8 | 39 | 32 | 3.0E-11 | ||
| PANTHER | 48 | 364 | 317 | 3.4E-99 | ||
| PANTHER | 48 | 364 | 317 | 3.4E-99 | – | |
| Gene3D | 216 | 297 | 82 | 2.1E-20 | ||
| SUPERFAMILY | 239 | 298 | 60 | 8.39E-21 | – | |
| Pfam | 249 | 291 | 43 | 4.3E-13 | ||
| CDD | 249 | 291 | 43 | 3.78768E-23 | – | |
| SMART | 250 | 290 | 41 | 6.6E-8 | ||
| ProSiteProfiles | 250 | 291 | 42 | 12.224 | ||
| MobiDBLite | 298 | 336 | 39 | - | – | |
| MobiDBLite | 298 | 320 | 23 | - | – | |
| MobiDBLite | 354 | 376 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin protein ligase activity | Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. |
Expression pattern of LotjaGi6g1v0031300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…