Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0045000 |
| Transcript ID | LotjaGi6g1v0045000.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S protease regulatory subunit; TAIR: AT5G58290.1 regulatory particle triple-A ATPase 3; Swiss-Prot: sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog; TrEMBL-Plants: tr|A0A0R4J4L8|A0A0R4J4L8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0045000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8444916..8448529) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGATCCTCAGCGATGGTGCTAGACCCAAAACCCCTATCGGAGCCACCACCGTCCCTTCAGTCAGCGAAATCGGATTA CCTCTCCGGCGCCGACGCCGATGAAGACGACCTCTACAGCCGCCTGAAGACGCTGCAGCGCCAGCTCGAGTTCATCGATA TCCAAGAGGAGTACGTGAAGGAGGAGCAGAAGAATCTGAAGCGCGAGCTTCTCCGCGCGCAGGAGGAGGTCAAGAGGATC CAATCGGTTCCCCTTGTCATCGGCCAGTTCATGGAGATGGTTGACACGAACAACGGCATCGTTGGCTCCACAACGGGATC CAACTACTACGTTCGGATCCTCAGTACTATTAACCGTGAGCTCCTCAAGCCTTCTGCCTCCGTCGCCCTCCACCGCCACT CCAACGCCCTCGTTGATGTTCTCCCGCCGGAGGCTGATTCCAGTATCTCTTTGCTTAGCCAATCTGAGAAGCCTGATGTC ACTTACAATGTCAGTAATTTCTTAATTTGGTTTTGGATTAGGGATTTCTTTTCACAAAATCTAGGGTTAAACTTGAATGC AACAGTTTCATTTTATTTAATCATGGTTTGCGGTTTGATTATAATGCTTAGGTCTTGCAAAAGTGAAATTTAGCTTTGGT GGTTGTGGTTTGAACTGTTTAGATGAAATCAAAATGGGAAAGGAAAGTTCTTTGGATTTGAAGAAAGTAATAATGCTGTG CAACATAATGATTACTTTGTTAAAGAAAAAATGAGGAAGTGATTATATTTGCGCGTTTCATTTTATGTAGCTTCTTGGGT TAGTAGTTGCTATATAAGCTAGAGAAGTATGTTCTTCTAGAGTTAGAGTGGGAGCCATAGATGAATGAGCTTGGGAAGTT CTCTTAATTCTTTATTTGTAGCTTGGAATCTTGGATTGTGACGCCACGCCAGAGGTTGTAAACATTGCTGATTAGATATT CGTTAAGTTATATGCTAGATTGTATTGAGTCTAGGAGGTTGTAGGGTGATAGCAGTGAAACTCAGACTATAGGACTATCA TTGTGGATGGGTGGGAATTTTGACCTTCCAAGGAATGTGATGGTGTCTAATGAGGAAGACGATAGAGGTGATGAAGTGTA ATACAGGCACATTACTCATACAATTCTGCGGTATAATTTATCTTGGTTAAGTCAATGACACTGGTACTAAGTAGTATTAA CAAAATATACTTTTATAGCATGTTTGTTAGACCTTGTGTGTAGTATGTATTGTTTGTCATCATAAGCTATTTTTTTCATA TGGGCTGGCCATAGCATAATTCCCCCTTAATATGGTTTTGATCTTTGTAGGACATTGGAGGGTGTGATATTCAAAAGCAG GAAATTCGTGAGGCTGTGGAGCTACCCCTTACACATCACGATCTATACAAACAGATTGGTATTGATCCTCCTCGTGGTGT TCTACTATATGGCCCCCCTGGCACGGGTAAAACAATGCTTGCAAAAGCTGTGGCAAATCATACTACTGCGGCCTTCATCA GGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTTGGTGAGGTATGAATTTTATGACATTTACATGGGAAGTGGTGTTAA CTATGTTTTGCAACTTACTCTGCTATCTTTGTTTGCTTTTGAATATTATGGCTTTCAGGATCATGATTATTGATGTTATT GTGCTCTTTATATTTACTAATTTTATTTCAAATTTGTGGATCATATATTTATTTTTTTGAGATTTCATTAATGGGTTATT TCCTCTCCGTGATTGTAAATACTGTTGTTCCTGAAGCTTGCTGGGAGTTTCAAAATTCACATTACGCAACATCTTGTAAT CTTGACTGCTATTTATATTTCAGGGTCCTAGAATGGTTCGTGATGTATTTCGTCTTGCAAAGGAGAATGCCCCTGCAATT ATATTTATCGATGAGGTTGATGCGATAGCTACTGCTAGATTTGATGCCCAAACTGGAGCTGATAGAGAAGTACAGCGTAT CCTCATGGAACTGTTGAATCAGGTATCTTTGAAATGATATTTCTATCAGGTGCTGTGAATGTGATTCATAATGCATTTCA ATGTACCAATACTAAGCTCTGCTGAGCCATATTGAGTTTTTCTTCCCATATCCTTAATCTCTGGCTCTTTAGATCGACTA CCTCCTCATTGGTTTAGATATTCTCTAAAGTTCTGGTTTAACTACCTGTTCTTTTCTTCAGATGGATGGTTTTGACCAAA CTGTGAATGTTAAAGTCATAATGGCAACTAATCGGGCTGACACTTTGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGAT CGGAAAATTGAGTTCCCTTTACCTGATAGGCGCCAAAAGAGGCTTGTATTTCAGGCAAGTCTTTTGCATTTCTATATATT GTAATCTTAAGCTGTATCAAGTATCAACAGAATTCCATGTTTATATTTCATGAGTGACAATTTTCAGTTTGCAGATTTTC ATTTGCTTTAATATTCATTTAATCATTTATTCTCAGCTACTTTCCAGCCTATTATTTGATGATTTATTTTTTAACAGGTT TGCACTGCCAAAATGAACTTGGGTGATGAAGTAGACCTTGAGGATTATGTTTCTCGACCTGACAAAATCAGTGCTGCTGA GGTTTGTTCATATCTAATCTGATAATTTTCATGATGTTAATTAGTTACGTAAGCTTACGTGGTATTAATGTCATGATCAT AAATAATTAATCCAACTATTGAAGACTTTCAAAAACCTATCGTTTCACACTTCCATCATGCCGGCTTAAATCAACCATGA AATACTTACTTTGGGAGTGATTGGCCAGCTTCTTTCAGAAGCTCTTTGTCTCCATTTTGAGATATGTAGTTGAAGATTTG GGTGATATAAGATGCTGCTTTTAGCAGTTCCATTTGAACTGAAAACTGTTATTTAAAAGAAAACTATTATGTTTATTTAA TAAAGACACTTTATATTAGCTGAATGGCATTCCTTCATGGGATATCGCGGAAGTTTAAGTTATTATTTTAGTAGCTGTTT TCGAAATCAAAATTTGTGTTGTTTAAATAGATTGGATTATGGGAAGATGAATTGTTATTTTTGTGAGAAGGATTATGATC TGTTGTTCTAACCTTGGAATGACGGACAGCTAATAAAAAAAGTGATTTCCGTATGCTCTATACATTTAGCAAACTTAGAT TTTAGCAGATGGGGAAAAATGATGAAAGGCATAACTATTTGATTGAATCATAGGGTTGTTTTACATGATCTTCTCATGAA TAAGATGTATAGCTGATGAAAAACAAATCAACCTTACTACCTTTTCTGTGGCCTCAAAAGTAATCATTTCAGCTTTACAC TAATAGAGGTAGCTGTGAAGAAAGACAAAAATGGAACTAAGTAGCACTTTGAAATAGAATATTATCATCTCAGCAGTTAT TTGTTTGGTATAATTGGTATTGGTTATTGGTGTCTGCAGATACAAGCTATTTGCCAAGAAGCAGGAATGCACGCTGTTCG TAAGAATAGATATGTCATACTGCCAAAGGACTTTGAGAAGGGTTATAGGACAAACGTGAAGAAGCCCGATACTGACTTCG AATTTTACAAGTGA
CDS sequence (LotjaGi6g1v0045000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATCCTCAGCGATGGTGCTAGACCCAAAACCCCTATCGGAGCCACCACCGTCCCTTCAGTCAGCGAAATCGGATTA CCTCTCCGGCGCCGACGCCGATGAAGACGACCTCTACAGCCGCCTGAAGACGCTGCAGCGCCAGCTCGAGTTCATCGATA TCCAAGAGGAGTACGTGAAGGAGGAGCAGAAGAATCTGAAGCGCGAGCTTCTCCGCGCGCAGGAGGAGGTCAAGAGGATC CAATCGGTTCCCCTTGTCATCGGCCAGTTCATGGAGATGGTTGACACGAACAACGGCATCGTTGGCTCCACAACGGGATC CAACTACTACGTTCGGATCCTCAGTACTATTAACCGTGAGCTCCTCAAGCCTTCTGCCTCCGTCGCCCTCCACCGCCACT CCAACGCCCTCGTTGATGTTCTCCCGCCGGAGGCTGATTCCAGTATCTCTTTGCTTAGCCAATCTGAGAAGCCTGATGTC ACTTACAATGACATTGGAGGGTGTGATATTCAAAAGCAGGAAATTCGTGAGGCTGTGGAGCTACCCCTTACACATCACGA TCTATACAAACAGATTGGTATTGATCCTCCTCGTGGTGTTCTACTATATGGCCCCCCTGGCACGGGTAAAACAATGCTTG CAAAAGCTGTGGCAAATCATACTACTGCGGCCTTCATCAGGGTTGTGGGATCTGAGTTTGTGCAGAAGTATCTTGGTGAG ATGGATGGTTTTGACCAAACTGTGAATGTTAAAGTCATAATGGCAACTAATCGGGCTGACACTTTGGATCCTGCACTTCT GCGTCCTGGAAGGCTTGATCGGAAAATTGAGTTCCCTTTACCTGATAGGCGCCAAAAGAGGCTTGTATTTCAGGTTTGCA CTGCCAAAATGAACTTGGGTGATGAAGTAGACCTTGAGGATTATGTTTCTCGACCTGACAAAATCAGTGCTGCTGAGATA CAAGCTATTTGCCAAGAAGCAGGAATGCACGCTGTTCGTAAGAATAGATATGTCATACTGCCAAAGGACTTTGAGAAGGG TTATAGGACAAACGTGAAGAAGCCCGATACTGACTTCGAATTTTACAAGTGA
Protein sequence (LotjaGi6g1v0045000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSSAMVLDPKPLSEPPPSLQSAKSDYLSGADADEDDLYSRLKTLQRQLEFIDIQEEYVKEEQKNLKRELLRAQEEVKRI QSVPLVIGQFMEMVDTNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDV TYNDIGGCDIQKQEIREAVELPLTHHDLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE MDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDYVSRPDKISAAEI QAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| PANTHER | 25 | 240 | 216 | 4.5E-199 | – | |
| PANTHER | 25 | 240 | 216 | 4.5E-199 | ||
| Gene3D | 44 | 154 | 111 | 3.4E-28 | – | |
| Coils | 56 | 83 | 28 | - | – | |
| Pfam | 87 | 142 | 56 | 5.2E-9 | ||
| Gene3D | 155 | 240 | 86 | 1.5E-30 | – | |
| SUPERFAMILY | 158 | 349 | 192 | 8.03E-46 | ||
| CDD | 166 | 280 | 115 | 1.70552E-15 | – | |
| SMART | 196 | 282 | 87 | 5.2E-9 | ||
| Pfam | 200 | 241 | 42 | 1.3E-12 | ||
| PANTHER | 240 | 359 | 120 | 4.5E-199 | ||
| PANTHER | 240 | 359 | 120 | 4.5E-199 | – | |
| Gene3D | 241 | 281 | 41 | 6.6E-13 | – | |
| ProSitePatterns | 250 | 268 | 19 | - | ||
| Gene3D | 284 | 363 | 80 | 1.8E-19 | – | |
| Pfam | 303 | 345 | 43 | 4.7E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | Proteasome-activating ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate, which promotes unfolding of protein substrates, and channel opening of the core proteasome. |
Expression pattern of LotjaGi6g1v0045000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…