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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0061200 |
| Transcript ID | LotjaGi6g1v0061200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|I1LMF4|I1LMF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:11131424..11137644) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTCACAGCTCTGACGAGGATTCTGATATAAGTGAATCAGAAATAAGCGAGTACGAAGATAAATATTATGAAGAACT GAAAAATGGAAGTCAGAATGTGAAAACCTCAGATGAGACCTTCACTTGTCCATACTGCCCTAAAAAAAGGAAACGGGATT ATTTATACAATGAACTCCTTCAACATGCTTCTGGGGTGGGTCAGAGTGGTTCACAAAAGAGAAAGGCAAAAGAAAAGGCT AATCATTTGGCCTTAGTGAAATATTTGGAAAAGGATCTAAAGAATGGAACGAATGGTGATGTTCCATCAAAACCCGCTGA TAAAAATGATTCTCAGGTTAATTCTGATGAGCAGTTTGTGTGGCCCTGGATTGGGATTGTAGTTAATATTCCCACTAGAC GGACAGAAGACGGGCGCACTGTTGGGGCGAGTGGTTCCAAGCTGAGGGATGAGTACAAAAGCAGGGGTTTCAATCCTGTT CGAGTCAATCCTTTGTGGAATTTCCGAGGTCACACTGGAACTGCTCTTGTGGAATTCAAAAAAGACTGGCCAGGCTTAGA TAATGCGTTAGCCTTTGAAAGAGCATATGAATTAGAACATCATGGGAAAAAGGATTGGTTTGCTAATTCTGAACCGAAGG CTGGTCTATATGCCTGGGTTGCCCGAGCAGATGACTACAACAAAATGAACGTCATTGGGGAACATCTGCGGAAGATGGCT GATGTCAAAACCATACCTGAACTCATTGAAGAAGAAGCTCGAAGGCAGAATAGTCTAGTGTCCAATTTGACTAACATTAT ACAGGTGAAAAACAAGCACTTAAAAGAGATGGAACTAAGATGCTCTGAGACTACGGTCAAAATGGAGATTGCCATATCAG AAAAAGATAAGCTCATTCAAGATTATAATGAAGGTAATCTATTTTTATCGAGCCTAAGTTACTTCTCCCTAACTTGGATC AGGACTTGTTTAGTTTTTGAGCTTCTGATTTATATGTCTAGTACTAGAAACCCAAGTATATGGTGCAGCTGGTATTTTGG TTACAGATCAGATTCTAGAGTGGCAGTTTCTTGCCCACTGGGTTGAATCTGATTTTGACAGTTGGGAGAGGAGAGTGGGA GGGTGGTCCAGTCATCACCGCTCACTGCTTGAATAATTACAGTGGTTGCACCATAGAATTAGACATCGATAAATTGATTT CTTAAGAATGCTATGCCGGAATTCCATTTTACATTTTTCATAATTTGATTTTATTTTTAAATGCTCTGATCTGCTCTAAC AACTTTGTTTTATGCAATGATTCCTTGTATTTAGAGATAAAGAAAATACAGTCAAGTGCTAGGGATCACTTCCAAAGAAT TTTTAACGATCATGAGAAGCTTAAATTGCAACTGGAATCTCAGAAAAGCGTGCTTGAGTTGCGAAAAATTGAATTGGAAA AGCGCGAGGCACATAATGAAAGTGAAAGAAAAAAGCTGGCAGAAGATATTGAGGAGGTATAGTGTTTTTCTTATTTTGCT CCATCTCATCTAGCATACTATGATTGGGAATCCTGTGAATTTAATGTTGAAGAATTTAAATTATTATTTGAAGTTGATTG ATTATTATGGAGATGGTTGATACTTGATACTCTTGGATGTTTTATTGCTTTCAAGGAAGGCCTTAGCAACAAAGGTTTAT CATTTTTCCACTTATGGGTTTTGAATTTTGATTGTCATGAAATGATATGTTGAAAATTATTTTTCTGTTGAATTTATGGA TAATTAATTCTGAACATACTGGAAATATGATGAAAATGGTTTCCTTTTCAGTTGTATGCTGTTGAAGGCTATGAATCCAA ACCAAGTTAATGGCTGGATTGCTGGTGCATTTTCTTTAAAAGGGAAACTATTAATGATTAAATCCTTGTTAGCACCTTAT AATCTGTGTGCTTGGATTTGTATCTCTGCGATTTTGATCATATCCCTCGTTTTGTCACAGGAACGTAGAATGGATTGAAT CAATATTTAACAGTAACTGTTGAATATAATTAAAATTATGAACTCTATTGAGGGATTATAAGGCATGCTTTTAATGAGAT GAAATTTGGGGAAGGGGGAGAGCAGGGGCGGAGGGAAGGTGCGACCTCCCTATGCCATGGCCATCCCCCCTATCTTTTAA CTTATTAATACTTATACAGTTATACTATATATATATATATAATTGGCCCCTGTATCCCAGTTGTTTTCCCATGACAGTAC TCATCCCTCCCCATTTCTTTTTTTTTTTTTTTAACTAAAACTCACACACTTCTTCTTAATAAATGAGATCATTGTAATTT TTTTTATTCACTGAAAGTTTGGCTTATATGGGTCGCACAAGCACATAGTGGAAAGTGAGTCTCATTTTCTTTGTAAAAGC AACCAAAGAAGTTCCATTCAACTGAATAAGTGAATAATTCATGACGCTTCCTAATGCTACTGCTGCTTCATCTTGCTCCC GCTGATTAATAATTGAAGTGTTGCTCCTAATTTTTGGGTCATGAAGAGATTTCTTCTTGATTATGTGTTTCGATGTGCTA CTTTTCTACTACTTTCGGAGAGAGTGCGCTGTTGTTTCTTTCTAGTTTATTCTAGTTTTTGTTGCTGGTCATTTAATGCT TATCTGATGGTTAGTATCTCTTATACTCAATCTAATCATGTATTTCTTTTGCTTATAAAATAGTAGTTATATATCAATCT TGTCGCATATGTTATATATGTGAAAATTTTAAATTTTCTTATAAATCATATAGTTTTAGATCTTGGTCACCCATGTCTCA AAATCCCGCCTCCGCCAATCTAGAGTCGTATGCTAGGGAATTTCAAACCAGGGGTTTTCTGTTTTTCCTTTACTCTTCTT ACTCCCATTAAGATTATTTTTGGATTGCTAGAATGTAATGATACTACTAGGTTCTATTTTATGGATTGTTTAAAGCAGGA TGAAATGATTTTATTCTGTTTGATCCAACACTCTTCTATTTTTGCCTTCAACTGAGGAGCATGGGATGAAAAAATGTCTG AGATTTGAGATTTTTTATCTTAAAGCGGAAGTCATGGCTTGCCTCGAAACCAGCTCATGATACCATGTTAGAATTAACTT ACATTCACACATCACTACAAAACCCTAAGCTTAAGGCAATGGATGTGTGTGTTCTTTTACTTGTATACACTTCTACACTT GCTAATCTAGACAATGTGGGAATTCTCTGAGTCACACTTGTTACTACTCTAATAGTTTTAAATAATAATGTTCAAGCAAT GGAATGACATGTTTATTTCATTCCTCTCCATTTCTTTTCATCTTATTCCATTCCATTTCACTTTCTAATAGATATCCAAG CAGCTTAAAAAGCATGCTTAAGGATCCTTTGAACTAAAATTTTGACATAATGTTTTTGCTGTGCCTTTGAAATCATTAAG ATGATAATGTGCTTAAAAAGCTTTAGCAGGCCTTGTTTAACTCTGCTGCATTTATTGTCTTTGCAGAACGCAGTGAAGAA TAACTCTCTTCAGATGGCTTCTCTGGAGCAACAGAAAGCGGATGAAAATGTTATGAAACTGGCTGAAGATCAAAAGGTTT GTGTTACTTGTCATTAAGCTTTGTCAATGATCAAAACTGTACACCTGAACATCAGAGTAGGTTAATGTTATTTGAATATA TTTTGAATTTTTGATACAGAGAGAAAAAGAAAAACTCCATGCTAAAATCATTCAACTTCAAAAAGAACTGGATATGAAAC AAAAGCTGGAATTGGAGATTCAACAGCTAAAAGGATCATTAAGTGTTCTGAAGCACATAGAAGATGATGAAGATGCAGAA GTTCTGAACAAGGTTGATGCTTTACACAAGGATTTGAGAGAAAAGGAGCAGTCACTTCAAGACATAGATGAATTGAACCA AACACTAATCGTCAAAGAGCGGAGGAGTAATACCGAGCTGCAAGAAGCTCGAAAGGAATTGATTGATGTAAGTGTGCTTT TTCAGATATTTTTCCCTTTCCAGTTTACTGATTCTTTAAATTAAATTGGAAGAGCACCTGTTCAACAATGTCAAGTTTTA TAGTTCTTTCATATTTGAATTATTAGTTGGTAATGTTTTGTATGCTGATTTTACTTGCTTATTTGAAGTGTTATGCGTTG AAGTACACGTGGTATAAATTCACATTTACTTATAGAGCACTCCTCTTACCTCTTCTTTTTTTCTTTCTGGTCTACTCTAT CTTGATATCTATTATTGTTCAGAGCAAGGCAGCAAAGTGACTAGAGTACAATTAAAATCTCGTTGTATCCATTTCATGTA ATTGATTTTTATTACTCGAAGTGTTATTAATGGTCGATCTGATTATGCAGACGAGACCTAGCTGTGATTTTGTGGATATC CATTCACTGCTTATATGTTACATTGATTTTAATCGTTGGGCTTTTCTCTCTTGCAGTACATTAAAGAGACGTCATCTCGA GGCCACATTAAGGTGAAGAGAATGGGGGAACTGGACACTGGACCGTTCCTTGAAGCCATGAAGAAAAGATATAATGAGGA GGAAGCTGAAGAGAGAGCTTCAGAACTGTGTTCATTGTGGGCAGAATATCTGAAGGACCCAGATTGGCATCCATTCAGAG TTGTCATAATTGAAGGGAAAGAAAAGGTATGTCTTTGTTAAACATATAAGTCCCCTTGAAATTGTCCAGAACTATACCTG TTTCATTGCAATGCATATCACTCTGAATCAAATTTGGTTCAGCTATTATTTATTTTCATTACCTCCTCATTAAGAAATGA ATATTTTGATGGTCACTGTACTTTAGATTATAGCTATTAGGCCTTCTTAAGCTGTAGTCCCCTCTCACCTAGTGTAAGCT AGGGGCATTCTTTATATTGATCGTTTCGCTTTAGTATATGACATATATTGAAGTTGAGGAAGGTTTAAAGTATTAGAAAC GCCATGAGGGATTAATAGGAAAAAGAATAACCAGACAACCATGAAGAGGGGCCATTATTTTGAAATTTGGAGTCTGAGCC TCCTTATTAGCAGCTGTTGCATTTTTTTGTGAGTTTGTATACCTGGAAGGTTTAAACAGCATGCTTTGCAAAACTCAAAT GCAAAAATGATGATTCAATTGACATTATGGGGGGTAAGTAGTTTTACGTGTATCCTCCTTATAGATCCTGGTTATGAGGG TGTGTTGTACAAGGAAGGGGATAGGCAGTAAAGGATCAGCACATAGTGGACAAGGAAGGATACTATATAAAAAAGGGGAT GATTCATGATGTTTAGAACATAAGTGAATACCAAGCTGATAAGCAGTTGTGGGAGAAGGATGGAATTTGTCTGTGGGAAA TGAAAATATAAGAGGGAAGGAACGGAAGTGTGGGATCTGGAAGATTGAGTGCGGGATATTAGGTGGGAGGAATCAGATCC ATGATCCATCAATGAACCTGTTCATTTTCACTGATGTTGTATTCTTCTGTTTGTCTTCCAGCATCAGCGAGAGTAAAAAT GAGAGATACACTGTAATCCCTCCTTAGATACTCTTATTAGATTACTCTCTATTTAGAAGAGGGAATTATTGTTTGTGAAA GCAGTAATATCTAATATTAATAATCACACCTGATTCCAGGTCCTAACATATTCAGGGATACCTGATGCTCTGCCTTATTG TTCCTTTATTAAATTATCATGGGACCTTGTGTGATTGATTATATTTAGGGAAGTTGATTTGGGGATCTTTGAAATGTTCT TGCTTTGCCTTGGTTCATTGATGATTATTTAACCGAGCTCCATTAACTTTCATTCTTCCCCATTGCTTATGGACATTTAT GTACAAAATAGCAATTTTATCTATATAAAAGGGTTTCGGATCCATTTTAATCTACAATTATCCTGCAATATTTCGTCTAA TTTCTTTGTTGAAACTTTTAAAGCATGCAATTTTTTATCTGGTATCACATTTTTTTAATTTCAGGAGATAATTAAAGATG ACGATGAAAAGTTGAATGGCCTAAAAAATGAAATCGGTGAAGGGGCGTATAAAGCAGTGATGACTGCTTTAACAGAGATA AATGATTACAATCCCAGTGGGCGATACATAACCTCAGAATTGTGGAACTATAAAGAGGGAAGGAGAGCAACTCTGAAAGA AGGAGCGCAAGTTCTGTTGAAGCATTGGGAAGTGGTTAAAAGCAAGAGGGGAATGATGTGA
CDS sequence (LotjaGi6g1v0061200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCACAGCTCTGACGAGGATTCTGATATAAGTGAATCAGAAATAAGCGAGTACGAAGATAAATATTATGAAGAACT GAAAAATGGAAGTCAGAATGTGAAAACCTCAGATGAGACCTTCACTTGTCCATACTGCCCTAAAAAAAGGAAACGGGATT ATTTATACAATGAACTCCTTCAACATGCTTCTGGGGTGGGTCAGAGTGGTTCACAAAAGAGAAAGGCAAAAGAAAAGGCT AATCATTTGGCCTTAGTGAAATATTTGGAAAAGGATCTAAAGAATGGAACGAATGGTGATGTTCCATCAAAACCCGCTGA TAAAAATGATTCTCAGGTTAATTCTGATGAGCAGTTTGTGTGGCCCTGGATTGGGATTGTAGTTAATATTCCCACTAGAC GGACAGAAGACGGGCGCACTGTTGGGGCGAGTGGTTCCAAGCTGAGGGATGAGTACAAAAGCAGGGGTTTCAATCCTGTT CGAGTCAATCCTTTGTGGAATTTCCGAGGTCACACTGGAACTGCTCTTGTGGAATTCAAAAAAGACTGGCCAGGCTTAGA TAATGCGTTAGCCTTTGAAAGAGCATATGAATTAGAACATCATGGGAAAAAGGATTGGTTTGCTAATTCTGAACCGAAGG CTGGTCTATATGCCTGGGTTGCCCGAGCAGATGACTACAACAAAATGAACGTCATTGGGGAACATCTGCGGAAGATGGCT GATGTCAAAACCATACCTGAACTCATTGAAGAAGAAGCTCGAAGGCAGAATAGTCTAGTGTCCAATTTGACTAACATTAT ACAGGTGAAAAACAAGCACTTAAAAGAGATGGAACTAAGATGCTCTGAGACTACGGTCAAAATGGAGATTGCCATATCAG AAAAAGATAAGCTCATTCAAGATTATAATGAAGAGATAAAGAAAATACAGTCAAGTGCTAGGGATCACTTCCAAAGAATT TTTAACGATCATGAGAAGCTTAAATTGCAACTGGAATCTCAGAAAAGCGTGCTTGAGTTGCGAAAAATTGAATTGGAAAA GCGCGAGGCACATAATGAAAGTGAAAGAAAAAAGCTGGCAGAAGATATTGAGGAGAACGCAGTGAAGAATAACTCTCTTC AGATGGCTTCTCTGGAGCAACAGAAAGCGGATGAAAATGTTATGAAACTGGCTGAAGATCAAAAGAGAGAAAAAGAAAAA CTCCATGCTAAAATCATTCAACTTCAAAAAGAACTGGATATGAAACAAAAGCTGGAATTGGAGATTCAACAGCTAAAAGG ATCATTAAGTGTTCTGAAGCACATAGAAGATGATGAAGATGCAGAAGTTCTGAACAAGGTTGATGCTTTACACAAGGATT TGAGAGAAAAGGAGCAGTCACTTCAAGACATAGATGAATTGAACCAAACACTAATCGTCAAAGAGCGGAGGAGTAATACC GAGCTGCAAGAAGCTCGAAAGGAATTGATTGATTACATTAAAGAGACGTCATCTCGAGGCCACATTAAGGTGAAGAGAAT GGGGGAACTGGACACTGGACCGTTCCTTGAAGCCATGAAGAAAAGATATAATGAGGAGGAAGCTGAAGAGAGAGCTTCAG AACTGTGTTCATTGTGGGCAGAATATCTGAAGGACCCAGATTGGCATCCATTCAGAGTTGTCATAATTGAAGGGAAAGAA AAGGAGATAATTAAAGATGACGATGAAAAGTTGAATGGCCTAAAAAATGAAATCGGTGAAGGGGCGTATAAAGCAGTGAT GACTGCTTTAACAGAGATAAATGATTACAATCCCAGTGGGCGATACATAACCTCAGAATTGTGGAACTATAAAGAGGGAA GGAGAGCAACTCTGAAAGAAGGAGCGCAAGTTCTGTTGAAGCATTGGGAAGTGGTTAAAAGCAAGAGGGGAATGATGTGA
Protein sequence (LotjaGi6g1v0061200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAHSSDEDSDISESEISEYEDKYYEELKNGSQNVKTSDETFTCPYCPKKRKRDYLYNELLQHASGVGQSGSQKRKAKEKA NHLALVKYLEKDLKNGTNGDVPSKPADKNDSQVNSDEQFVWPWIGIVVNIPTRRTEDGRTVGASGSKLRDEYKSRGFNPV RVNPLWNFRGHTGTALVEFKKDWPGLDNALAFERAYELEHHGKKDWFANSEPKAGLYAWVARADDYNKMNVIGEHLRKMA DVKTIPELIEEEARRQNSLVSNLTNIIQVKNKHLKEMELRCSETTVKMEIAISEKDKLIQDYNEEIKKIQSSARDHFQRI FNDHEKLKLQLESQKSVLELRKIELEKREAHNESERKKLAEDIEENAVKNNSLQMASLEQQKADENVMKLAEDQKREKEK LHAKIIQLQKELDMKQKLELEIQQLKGSLSVLKHIEDDEDAEVLNKVDALHKDLREKEQSLQDIDELNQTLIVKERRSNT ELQEARKELIDYIKETSSRGHIKVKRMGELDTGPFLEAMKKRYNEEEAEERASELCSLWAEYLKDPDWHPFRVVIIEGKE KEIIKDDDEKLNGLKNEIGEGAYKAVMTALTEINDYNPSGRYITSELWNYKEGRRATLKEGAQVLLKHWEVVKSKRGMM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| PANTHER | 3 | 635 | 633 | 0.0 | – | |
| PANTHER | 3 | 635 | 633 | 0.0 | – | |
| Pfam | 43 | 86 | 44 | 6.3E-19 | ||
| MobiDBLite | 94 | 113 | 20 | - | – | |
| Gene3D | 111 | 282 | 172 | 2.8E-70 | ||
| Pfam | 116 | 227 | 112 | 2.1E-38 | ||
| CDD | 119 | 226 | 108 | 4.76775E-39 | ||
| Coils | 292 | 319 | 28 | - | – | |
| Coils | 328 | 360 | 33 | - | – | |
| Coils | 391 | 435 | 45 | - | – | |
| Coils | 447 | 495 | 49 | - | – | |
| Pfam | 505 | 635 | 131 | 8.7E-55 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Gene silencing by RNA | Any process in which RNA molecules inactivate expression of target genes. |
Expression pattern of LotjaGi6g1v0061200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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