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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0062800 |
| Transcript ID | LotjaGi6g1v0062800.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT3G55530.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1; TrEMBL-Plants: tr|A0A0S3RZS1|A0A0S3RZS1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0062800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:11534960..11543049) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTACACCACTTGTTCACCCTTTCTTCTTTAAACAAAACAAAAAAAGAAAAAAGAAAAATCTCACCGATTCTGGTGAT CTTCCCCCTCCTCAATCTCACCGAATCCAGAGATACAACCGACCAAGATCCAACCTTCATTTCTTCAATTGGAATCCAAA CGTTGTTTGCGGTTCCTGTCGCTATCAGATTCACCTGTTGCTCCTCCTCCTCCTCGTCAATTTCTGCATTATCGAGGTTT TCACACACAACATCGATTTTTTGATTATCATCACATAGAATGTTCCGCAATGTTTTCGTTTTTCTTTTGTTGTTTGATGT GTTTCTTTGTTTATTGATAGTCAATTTTAACGTCATTGCAACATTGAGCTAGTTAGGGTTTTGTGTGGTGTTGATTTTAT GCCTTTTCGTGTGATGATTGTGTAATGAACTGTTGTGGGGAGTCTTGCAAATTGTTACTTTTGAGTCTAGAACAGGGAAA TGTATTATTCTAAATGTTGTGCCAAGCTTTAGGAGCCATAAGTTTTCATCAATGCTGAGCAGAATTATAGTACTACATTT TAGAATCATGTTCTGTGTGAAGGGGAACCAATTTGAAATGTTCATGTGCTATATTTGAAATGTTTGTGTTTAAACTAGTT GTTTATTTTTATGGTCGATTCAAATTGAATTTTTTTTTGCCTTAGTTTTTTTATGTGGTTATGTTATTTTGATGTTGGAG ATTTCGGTTAAGTGACACTGAATTTTAGACTCTTGGGTTTTAGGTATGGTCCTTCATATTTAGATACAGTCTCCCTTGTT ATAATTATGTTTTTTTGCCGGATTTTCCCATTTTGTTCTCCATCTCAATTCTATTGAACTTCACACTCATGCAGTATTTG CTGTGGATTTCTTGTTTACTGACCATGATCCGATTTGACGTCTTTCAGAATATTGGAAGGTTTTAATTGTTGATTCTGGT CTGGTCTTAAGTCAACCTCTGAAGTTTTGATTCAAGCTTCCAAATATATAAAGCCATGAGTTTTGTTTTTCGAGGAACAA GAGCAGACATAGAAAATGGGTTTCCGGGATTTATACCTGAGAGGCGTGCATTGGTATGTAATTTATGTCTCAGTTATTTG CTTAAACGAAGTAGCATAGCTGAAATACATAATGCTATTTTGTTTCTTTGTTTTCTCATTTCATGAATAAAAGCATTGAT TAACTAAAACTTCATACTGATTACAATCTTTTCTTCAGCGTGTTCATGCAGCACGTCCTAGTAATTCTAATTCACTCACT TTTCTTGTGACAGGTATTCATGCTTTCACATTATGTGCAATCATTTTAAGTGTAGATTAATTCTTTTTTCTATATCTTCT TCAATGTTCCATTACAACTTACTGCTTATTTGTTTCAGTTCTCCTGTTATTCATGATACTCAACTCTCATCAGATGTCGC CAAATTTTCTGGTATGGGTCTTCTGTATGTAAACAAGGGATACACGTTTTTTTCATTTTGTGAAAAGGGCACTTCAAATT GTTTGAGTGGTTTATGACTGATCAGGTCTTCTTTCTGTTTGTAGCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCTACA ATGTTAAGGATGTACGCAACATGTCAACAGCTCCAAGCTCAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGCCTTCTTGG CCATACAGAAGTGCGGTTGCATATGCCTCCATCGATAGCACTTGCAAGTCGAGGGCGTCTGCAGGGTCTCAGACTTCAGC TTGCACTTCTTGATCGGGAGTTTGATGACCTAGGTTTTGTAGTTCTTTTTCTCCTGTAGTTAATTTATATGCTCCAGTCT TTTCATGTGTCATAATATATTCATATACTTTATTTTTGAATTTCAGATTATGAAACTTTAAGAGCTCTGGATTCAGATAA TGTTTCTACTGCACCTTCTATGACAGAGGAAGAGATAAATGCTCTTCCTGTTCACAAATACAAGGTTTCTGGTCCCTCAA GGTAAAGTAATCAGTCAGACCAATTGTTGTAATACAATCTTTAAATGGATTCATTATTTTAAACCAGGAAATCCTATTCT AATAGTATTCTTCTATGCCCCACCTCCTTAAGAAAAGCCCTCTATCAAGAGTATTTTCTAATGTGAATGTGTACGTTCTG CAAGAATTATAACTCACTATTTACATGTCATAAGTCTAATTGTATAGACACATTTGAGGGTTTAAAAGCATAGATCCTAT AAATAAATTATATTATTTTCTATTGTGAATGATGTGTTATTGATGACATGAAAATGCTGATTTGAACTGCCATGTTACTT GGAAAAGAACTTGGGTACGTTTGTGCACTTCTATTTACTCTATTTTGTGTACCCATTTAATATGACATTTGAAGAGGTTC TTAAACTATACTTTATATGCAAGTAATTGACATGTTAACATGTATTCCAAAGATATATGCACACACACACATCACTAGTA TTGATGTGGGTATTTACTCCTTGAGTTACAATTTTTTATGGCGTCTACCTATTCTGAAAAAATTATAATACTGTTTCTTT GACAAGAAGCTTCTTTTGCTTACAGCAGTGGTTCCTCATTGCCACAAGCATCACCTTCTACTTCTGCCGAGGTATCATTG TTATTTTCCTCCCATCCATTTGGCCTAAACAAGTGAATAATAACATTGCATTTTATTATAACTTCACTGCTTCCTTGAGG GTATTTATTGTCTTCTGTATGTTATGCCTGTGATTTTCCTGCCCTATTCCTGGCCGTATTGGGAATTGCTGATACCCCTC CAACTGCATCTTGTGATGACTTTGAAGTGGATTTAATATGGCGCATTAATCTTGATTGAGGACTTTGAAAATTGTGAAAC TCATTGTATTATTTTCTTGAATATCATGTTATCATTTTGATAGAACCCAGAAAATATAAATGTATTATTAGTTAGAAACA TAGTAGTCAATCCCGGATAGCGGCGCGTAGCGGCCGGCCCCAAAAGGGGGATAGCGTGATAGCGCATAGCGGGATGGCCG CTATTCTGAATTTTTTTATGTAATTTTATATCATTAATAGTTTAATACTATATACATATAAATAGCAAACAATGTCAAAT ATTGCCTAAAATTCATAACATTCATAATAGAAATAAAAATCATAAGTCTTGAACAATAACACACAACTAATAACTTCTCA AAAGCAAGGTAAAGAAGTCGAATTTGCAAATCTGAATGAAGAATGAAGCTTAATTCTTTCAATTTTGACCTATAATGGCC CTGAGAAGTCCTAACATGCCCATAAAAAGGTTCCCCAACGATTTAAAACGAAGGGGCTTGAGTCATTTTCTCCTTCGTTC ATATAGCGCCGCTATTTCCCGCTATTGGCCGCGATCTGCCGCTATTTTGGCCGCTATTCGCGCCGCTACGACCGCTATTG TGAAGTTGGCCGCTATTTCATCTCAATAGCGGCAGGGAGCCGCTCCGCTCCGCTACACCGCTATAGCGCCGCTATTTGCC GCTATTGACTACTATGGTTAGAAACCCTAAATCCCAAATAAGAACTAGGGGAAGATACAAGGAAGAGATACCAAACACCC TCCCTAAACCCTAGAGAGACCCAACACTCTCTAAACCTAATTTCCAAAGTCAATACAAAGATAACCCAATGCTCTCTAGT CACTCTTATTTATAGGCACATGCCTCTTTAACCCAACAACTAACTAATGTCCCCGCTTAACTACTAACTAGCTAACCCGG TGCACCTATCAATACTCCCCCCTGAAAATTCACCTTGTCCTCAAGGTGAAGGACTTGGATCCAATTGCTGAATATTCGCA ACTCTTCCACCCGGATCCCATTGCTGAAACTGCAAATAGTACACATTGCATTAAGTGTTGAGCCAATTTCCCACATAACT GTGGAAAAATAGTCCTCCTGGATCCCGCACCAGTCTCCTTGGATCCACAAAATCCTTGATAGAATGAGTTTGGCCCAATG AGCCCAAACAGTGATACCCATCTTCAGCTCTCCAATTTTGTTCAACTTTTTCTGCCTTCCAAACCCATTTTAAGATATGG GCTTGACCCACCTTTTCTCTCCCACTAGTATACCCTAACAAAGGTGCCAGGCCTAGGATTATCACTCCAATGTGGCAGCC CAATGCTGCTTGGGTCATGTGTGGCCAGTACCACTTTTTCTTCCTGCCTTGTGTCTACTCTTAGTGGCTCCTGCAGAAGG TTTTTGGCACTTGGAAAGCAAGCCTTTTTTCTGTTTCCTCCATGCGCTGCCAGCAAGCAACTTCGACTTTTGCAACAGGA CACCTGGCTCACTGTTCTCTTTATTGAAGATTTTAGCAGTTTACTTCTGCCAAACCACATTAGTATTGAATGATAGAGAA GTGACATCGAATGTGAACCTGTGTCTCACTCGCAAGTCGAAACCTTTGGCTGTTTGTCTCTCTACGGCCAAAATCGTCTC TGCCACCATGTGCATATAGTTCTCCAGCGACTCCAGCGGTGGTTGCTGGACCGGCATCAGTGTTATCAAATAGCGGCGCT ATAGCGTAGCGGATTTTTGGCTAATCGCGACGCTGCTATTGCCCGCTATAGCGCGCTATTCCCGCTATTCGCCGCCAAGT AGCGGCTGAAATAGCGGATTTTGGGCGCACCGCGATGGTCCCCGATCGCGATTTGATAACACTGACCGGCATGCCTCGCC TTGCTTGCTATTACTAGGGCAGCTTGGGTCTCCATAGGCATCTCACAATACGGCGGTTCTTGCGGCAGAATTATAGCACC ACCTCTGTCACAATGGCCTCGATCACCGGCGAATTGTCGACCACCCTGGTATGACGGTTTTGACTGCGGTTGTTCTCAGA ACCGCTGTTGTTGCGACAGAAACTTCACCAAATCCGCCATCCTCGTCGTCCACCCAGGCCTCATCGTAAGGTGGTTTCGG TGGAGGTCGTATGAGCGCTCCCATATTTCTCTTGCCCAACAACTTCATCTCTGCACATGCGAAGTGATGTCGCCGGAACT CCGCCACTGACGACACCATGCGAAGTGATGTCGCCGGAGCTCCTTTCGCAACGCCTCCGCTGCTACTCGTTTATCCTCCG CTGCTTCAAGATTGGATTTTCGTGACGCTGCAATCTCTGATGGCCTCTTAAACGCCTTCGCTGCCGCTATCTCTGCCTCC AACGCGACTTCAGAAGTTTACTAAAAAACCGCTGCATCTGGCCTTTCTTTTGCTGCGGTGTCCGATCCCTTCAGCGACGC CACTGCCGTTGTTCGCTCTGCCTCGGTTGCCGCCTCCGATTCTCTCCTTTCTTGTTCCCTCTTCTGTCTCCTCTCACTTT CTTTCTGTAATCTCTCACTTTCCTTTCTCAATTCTGTTATTTCTCTGACAAGTGCACAAATCTCCTCCTCTTGCGATGAC AGAGAAGACGAGAAATCCTCCTTTCTCTTGCCAGCCATCTGCTCCTTATATACTGTTTGCTGTAGGATTATCTTGGTCAG GGCACCTAAATCGGTGCTCTGATACCAATGATAGAACCCAGAAAATATGAATGTATCATTAGTTAGAAACCCTAAATCCC AAATAAGAACTAGGGGGAAGAATGACGATACAAGGAAGAGATACCAAACACCCTCCCTAAACCCTAGAGAGACCCAACGC TCTCTAAACCTAATTTCCGAAGTCAATACAAAGATAACCTAATGCTCTCTAGTCACTCTTATTTATTGGCACATGCCTCT TAAACCCAATAGCTAACTAATATCCCCGCTTAACTACTAACTAGCTAACCCTGTGTACCTATCACATTTACATCCGCAGT TGTGCCTATATTTGTTGGAAGTCTCTGGAATTGTCCACCTGATACACTCATGGTGATGGTAGAGTTAAATAGCAATAGGA TCATACAAATATGTGCAGAACTATTCCCACCATCCCCTGGATAAAGTAACCAATCAATTTGTTTTTACATACCCCAAATT TGTTTGCGGTAGAATAAAATTAGGCACCGCAATTTTATCTGCTGTAAGGTTAGGCACCGCAATTTTATTTGCGTTAACGT GGAAGCCACTGTGTTTCTGGGTTTTTTTTATATATATATTGAAGGCAGGCTTAATTCTAAAAATTTGAATCATGTAACAC AATCTGGAAATTAAGGAAGCAAGTTTTCGAGGGTCTTAATTCTTCTTCTACTTCTGCATTTGATCAATCTGAGAGAGAGA GAGAGAGATTGAAGAAGAGAAGAGAAAGAGAGAGTAGAGAGAAGGACCATGGAGTGCAAAAAAAAGAAACAGTGGCTTTT ATTTTGTGTGGAGTGAAGAGAAGGACCATGGAGGTGGCTTTTAGAAAATGGTGATGTGTTTTATGTAGTGGGAGAAGAGA ATGGTTGCTGCAAGAAGAGAAAGAATGGAAGGGACGAAGCAGAGTGAGAACATCAAAAGGAACAAACGCAGATCTCATAA AATAAACCGACCACATTCTAGTTTGTGGAATGTAAATTGGCTACCGCTTTCTAGAATGCGGGAGCGAGAAGAAAAGGATG GTGAGGGAGATTTAAATCAGGGGTATTTTAGCCTTTTTTTAAAATCGGGGATGGTGTTATAATGTGTGGGGATGGTATTA GTAGTTTTTCCCGACAAATAAACCAACATTGTTAATTTTTCTACTGTCAAATTTTGAACTTTTTATTTTACTAGCTGTTT GTATAATATATTGCTCTTTGTTTGTGGCAGAAAGAGCAGGATAAATCAAATGCAGTTGGGAGCATGAAAGTCTCTGATGA TGAGCTCACTTGCAGTGTATGCTTGGAGCAAGTCAACGTTGGAGACATACTTCGTAGCTTGCCATGCTTGCATCAGGTCT GTTTCATAGTATAACAATCTCTAACCTTTTAACAAAATGTCTGTTTTCTATTTGTTTGATGATATATTGGTTCAGTTCAT ATCTGCTAATGGTCACTAATATATGTAAGAAGTAAAAAACAATATAAAGTCACTTTCAACTTTATTAGAAATAATAGCAG GCTAGTTTTAATCACCTTTTTTCTGCTACTAAGTACAAGCATGGTTGAAGTCCTCATATTTCAGCTATAGTTGAAATTGG ATTATGTAAATTGTTGCTGGCATTGCTTTTGTTTTTTAAAACTTTCTTTCTCTCTGGATGTTCCACCATGATCTGCGGTA CATCGCGTATCCGTAAATTATATTTTATGTAGTTTTTTTTGTGTGTACTAAATTACTCTCGCAATTTTGACTCGGGTGTG GTACCAATTGTATGTTTCAAGATTGTGTTGTTTCACTTTTGAGTTGTCGTGAGCTAGTTTCACCATATTTTAATTACAGT ATATAATTACATGACACCCTAACAAATTTGTCCAATATTAAATCTAAAATCTGTTTATGTTTGAAACATCTTTTTAAAGT TCTTCGAAGTTATGTAGTTATTTTTCAACTTGCAGTCATGGTAAACCAAAATGCTTAGATTAATATTCTCTTCTTATTTA TTTACTTATCTTAATGTGATACTGATACCTCTTATGTTTTGTTTCTTTATTAAAGTTTCACGCTAATTGCATCGATCCAT GGCTGCGGCAACAAGGGACATGCCCTGTCTGTAAATTTCGAGCAGGAACTGGGTGGAGTGAGAGTGGACATAATGACATC GCAGACATGGTTTAAACACCTTGTCTAATTTTTATTTATGGACTTTGTGTTTATATATACTATAACTGTAGCTTATTCTG ATCATGTATCAAAGTTAGTTGCTTATGACTAGTATTCGTGTAATTACCCTCAAATAGGGATGTGAAGAGTAGCAGAATTC CATGTAATGTAACAACTATAGAAGTTACAAAATTTGTTTCTTATTGAAGTTACAGTTTCATTTCGGCTCATTCTGAGATC ACAAGTTGAAAAATAGTGGAACATTATACCAACATTTTTTTACGGTTCACAATCCATTTGTGGTTTTTGTTTTTAAAGTA CAATTCATTTTCTTTTTTATCAACAATTTATTCTCTCTTCCATTAGATTCAATAAAAAAATTTGTTTATGGATTGCTCGA GTCATATGCG
CDS sequence (LotjaGi6g1v0062800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTTTGTTTTTCGAGGAACAAGAGCAGACATAGAAAATGGGTTTCCGGGATTTATACCTGAGAGGCGTGCATTGCG TGTTCATGCAGCACGTCCTAGTAATTCTAATTCACTCACTTTTCTTGTGACAGTTCTCCTGTTATTCATGATACTCAACT CTCATCAGATGTCGCCAAATTTTCTGCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCTACAATGTTAAGGATGTACGCA ACATGTCAACAGCTCCAAGCTCAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGCCTTCTTGGCCATACAGAAGTGCGGTT GCATATGCCTCCATCGATAGCACTTGCAAGTCGAGGGCGTCTGCAGGGTCTCAGACTTCAGCTTGCACTTCTTGATCGGG AGTTTGATGACCTAGATTATGAAACTTTAAGAGCTCTGGATTCAGATAATGTTTCTACTGCACCTTCTATGACAGAGGAA GAGATAAATGCTCTTCCTGTTCACAAATACAAGGTTTCTGGTCCCTCAAGCAGTGGTTCCTCATTGCCACAAGCATCACC TTCTACTTCTGCCGAGAAAGAGCAGGATAAATCAAATGCAGTTGGGAGCATGAAAGTCTCTGATGATGAGCTCACTTGCA GTGTATGCTTGGAGCAAGTCAACGTTGGAGACATACTTCGTAGCTTGCCATGCTTGCATCAGTTTCACGCTAATTGCATC GATCCATGGCTGCGGCAACAAGGGACATGCCCTGTCTGTAAATTTCGAGCAGGAACTGGGTGGAGTGAGAGTGGACATAA TGACATCGCAGACATGGTTTAA
Protein sequence (LotjaGi6g1v0062800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFVFRGTRADIENGFPGFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYA TCQQLQAQAQAHAAAASGLLGHTEVRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEE EINALPVHKYKVSGPSSSGSSLPQASPSTSAEKEQDKSNAVGSMKVSDDELTCSVCLEQVNVGDILRSLPCLHQFHANCI DPWLRQQGTCPVCKFRAGTGWSESGHNDIADMV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 35 | 35 | - | – | |
| PANTHER | 1 | 272 | 272 | 2.4E-147 | – | |
| PANTHER | 1 | 272 | 272 | 2.4E-147 | – | |
| TMHMM | 34 | 51 | 18 | - | – | |
| Phobius | 36 | 54 | 19 | - | – | |
| Phobius | 55 | 60 | 6 | - | – | |
| TMHMM | 61 | 80 | 20 | - | – | |
| Phobius | 61 | 80 | 20 | - | – | |
| Phobius | 81 | 273 | 193 | - | – | |
| MobiDBLite | 170 | 203 | 34 | - | – | |
| MobiDBLite | 173 | 202 | 30 | - | – | |
| Gene3D | 184 | 259 | 76 | 2.8E-19 | ||
| SUPERFAMILY | 208 | 257 | 50 | 6.8E-20 | – | |
| CDD | 212 | 254 | 43 | 4.00613E-23 | – | |
| Pfam | 212 | 254 | 43 | 5.2E-13 | ||
| SMART | 213 | 253 | 41 | 1.8E-8 | ||
| ProSiteProfiles | 213 | 254 | 42 | 12.238 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0062800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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