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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0062800 |
| Transcript ID | LotjaGi6g1v0062800.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT3G55530.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1; TrEMBL-Plants: tr|A0A072UZ54|A0A072UZ54_MEDTR RING zinc finger protein, putative; Found in the gene: LotjaGi6g1v0062800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:11535355..11541637) extracted from Lotus japonicus Gifu genome v1.2.
ATGATACTCAACTCTCATCAGATGTCGCCAAATTTTCTGGTATGGGTCTTCTGTATGTAAACAAGGGATACACGTTTTTT TCATTTTGTGAAAAGGGCACTTCAAATTGTTTGAGTGGTTTATGACTGATCAGGTCTTCTTTCTGTTTGTAGCTCTGGCT GGTGCTTGGTGTTTTCTTGATGGCTACAATGTTAAGGATGTACGCAACATGTCAACAGCTCCAAGCTCAGGCCCAAGCTC ATGCAGCAGCAGCCAGTGGCCTTCTTGGCCATACAGAAGTGCGGTTGCATATGCCTCCATCGATAGCACTTGCAAGTCGA GGGCGTCTGCAGGGTCTCAGACTTCAGCTTGCACTTCTTGATCGGGAGTTTGATGACCTAGGTTTTGTAGTTCTTTTTCT CCTGTAGTTAATTTATATGCTCCAGTCTTTTCATGTGTCATAATATATTCATATACTTTATTTTTGAATTTCAGATTATG AAACTTTAAGAGCTCTGGATTCAGATAATGTTTCTACTGCACCTTCTATGACAGAGGAAGAGATAAATGCTCTTCCTGTT CACAAATACAAGGTTTCTGGTCCCTCAAGGTAAAGTAATCAGTCAGACCAATTGTTGTAATACAATCTTTAAATGGATTC ATTATTTTAAACCAGGAAATCCTATTCTAATAGTATTCTTCTATGCCCCACCTCCTTAAGAAAAGCCCTCTATCAAGAGT ATTTTCTAATGTGAATGTGTACGTTCTGCAAGAATTATAACTCACTATTTACATGTCATAAGTCTAATTGTATAGACACA TTTGAGGGTTTAAAAGCATAGATCCTATAAATAAATTATATTATTTTCTATTGTGAATGATGTGTTATTGATGACATGAA AATGCTGATTTGAACTGCCATGTTACTTGGAAAAGAACTTGGGTACGTTTGTGCACTTCTATTTACTCTATTTTGTGTAC CCATTTAATATGACATTTGAAGAGGTTCTTAAACTATACTTTATATGCAAGTAATTGACATGTTAACATGTATTCCAAAG ATATATGCACACACACACATCACTAGTATTGATGTGGGTATTTACTCCTTGAGTTACAATTTTTTATGGCGTCTACCTAT TCTGAAAAAATTATAATACTGTTTCTTTGACAAGAAGCTTCTTTTGCTTACAGCAGTGGTTCCTCATTGCCACAAGCATC ACCTTCTACTTCTGCCGAGGTATCATTGTTATTTTCCTCCCATCCATTTGGCCTAAACAAGTGAATAATAACATTGCATT TTATTATAACTTCACTGCTTCCTTGAGGGTATTTATTGTCTTCTGTATGTTATGCCTGTGATTTTCCTGCCCTATTCCTG GCCGTATTGGGAATTGCTGATACCCCTCCAACTGCATCTTGTGATGACTTTGAAGTGGATTTAATATGGCGCATTAATCT TGATTGAGGACTTTGAAAATTGTGAAACTCATTGTATTATTTTCTTGAATATCATGTTATCATTTTGATAGAACCCAGAA AATATAAATGTATTATTAGTTAGAAACATAGTAGTCAATCCCGGATAGCGGCGCGTAGCGGCCGGCCCCAAAAGGGGGAT AGCGTGATAGCGCATAGCGGGATGGCCGCTATTCTGAATTTTTTTATGTAATTTTATATCATTAATAGTTTAATACTATA TACATATAAATAGCAAACAATGTCAAATATTGCCTAAAATTCATAACATTCATAATAGAAATAAAAATCATAAGTCTTGA ACAATAACACACAACTAATAACTTCTCAAAAGCAAGGTAAAGAAGTCGAATTTGCAAATCTGAATGAAGAATGAAGCTTA ATTCTTTCAATTTTGACCTATAATGGCCCTGAGAAGTCCTAACATGCCCATAAAAAGGTTCCCCAACGATTTAAAACGAA GGGGCTTGAGTCATTTTCTCCTTCGTTCATATAGCGCCGCTATTTCCCGCTATTGGCCGCGATCTGCCGCTATTTTGGCC GCTATTCGCGCCGCTACGACCGCTATTGTGAAGTTGGCCGCTATTTCATCTCAATAGCGGCAGGGAGCCGCTCCGCTCCG CTACACCGCTATAGCGCCGCTATTTGCCGCTATTGACTACTATGGTTAGAAACCCTAAATCCCAAATAAGAACTAGGGGA AGATACAAGGAAGAGATACCAAACACCCTCCCTAAACCCTAGAGAGACCCAACACTCTCTAAACCTAATTTCCAAAGTCA ATACAAAGATAACCCAATGCTCTCTAGTCACTCTTATTTATAGGCACATGCCTCTTTAACCCAACAACTAACTAATGTCC CCGCTTAACTACTAACTAGCTAACCCGGTGCACCTATCAATACTCCCCCCTGAAAATTCACCTTGTCCTCAAGGTGAAGG ACTTGGATCCAATTGCTGAATATTCGCAACTCTTCCACCCGGATCCCATTGCTGAAACTGCAAATAGTACACATTGCATT AAGTGTTGAGCCAATTTCCCACATAACTGTGGAAAAATAGTCCTCCTGGATCCCGCACCAGTCTCCTTGGATCCACAAAA TCCTTGATAGAATGAGTTTGGCCCAATGAGCCCAAACAGTGATACCCATCTTCAGCTCTCCAATTTTGTTCAACTTTTTC TGCCTTCCAAACCCATTTTAAGATATGGGCTTGACCCACCTTTTCTCTCCCACTAGTATACCCTAACAAAGGTGCCAGGC CTAGGATTATCACTCCAATGTGGCAGCCCAATGCTGCTTGGGTCATGTGTGGCCAGTACCACTTTTTCTTCCTGCCTTGT GTCTACTCTTAGTGGCTCCTGCAGAAGGTTTTTGGCACTTGGAAAGCAAGCCTTTTTTCTGTTTCCTCCATGCGCTGCCA GCAAGCAACTTCGACTTTTGCAACAGGACACCTGGCTCACTGTTCTCTTTATTGAAGATTTTAGCAGTTTACTTCTGCCA AACCACATTAGTATTGAATGATAGAGAAGTGACATCGAATGTGAACCTGTGTCTCACTCGCAAGTCGAAACCTTTGGCTG TTTGTCTCTCTACGGCCAAAATCGTCTCTGCCACCATGTGCATATAGTTCTCCAGCGACTCCAGCGGTGGTTGCTGGACC GGCATCAGTGTTATCAAATAGCGGCGCTATAGCGTAGCGGATTTTTGGCTAATCGCGACGCTGCTATTGCCCGCTATAGC GCGCTATTCCCGCTATTCGCCGCCAAGTAGCGGCTGAAATAGCGGATTTTGGGCGCACCGCGATGGTCCCCGATCGCGAT TTGATAACACTGACCGGCATGCCTCGCCTTGCTTGCTATTACTAGGGCAGCTTGGGTCTCCATAGGCATCTCACAATACG GCGGTTCTTGCGGCAGAATTATAGCACCACCTCTGTCACAATGGCCTCGATCACCGGCGAATTGTCGACCACCCTGGTAT GACGGTTTTGACTGCGGTTGTTCTCAGAACCGCTGTTGTTGCGACAGAAACTTCACCAAATCCGCCATCCTCGTCGTCCA CCCAGGCCTCATCGTAAGGTGGTTTCGGTGGAGGTCGTATGAGCGCTCCCATATTTCTCTTGCCCAACAACTTCATCTCT GCACATGCGAAGTGATGTCGCCGGAACTCCGCCACTGACGACACCATGCGAAGTGATGTCGCCGGAGCTCCTTTCGCAAC GCCTCCGCTGCTACTCGTTTATCCTCCGCTGCTTCAAGATTGGATTTTCGTGACGCTGCAATCTCTGATGGCCTCTTAAA CGCCTTCGCTGCCGCTATCTCTGCCTCCAACGCGACTTCAGAAGTTTACTAAAAAACCGCTGCATCTGGCCTTTCTTTTG CTGCGGTGTCCGATCCCTTCAGCGACGCCACTGCCGTTGTTCGCTCTGCCTCGGTTGCCGCCTCCGATTCTCTCCTTTCT TGTTCCCTCTTCTGTCTCCTCTCACTTTCTTTCTGTAATCTCTCACTTTCCTTTCTCAATTCTGTTATTTCTCTGACAAG TGCACAAATCTCCTCCTCTTGCGATGACAGAGAAGACGAGAAATCCTCCTTTCTCTTGCCAGCCATCTGCTCCTTATATA CTGTTTGCTGTAGGATTATCTTGGTCAGGGCACCTAAATCGGTGCTCTGATACCAATGATAGAACCCAGAAAATATGAAT GTATCATTAGTTAGAAACCCTAAATCCCAAATAAGAACTAGGGGGAAGAATGACGATACAAGGAAGAGATACCAAACACC CTCCCTAAACCCTAGAGAGACCCAACGCTCTCTAAACCTAATTTCCGAAGTCAATACAAAGATAACCTAATGCTCTCTAG TCACTCTTATTTATTGGCACATGCCTCTTAAACCCAATAGCTAACTAATATCCCCGCTTAACTACTAACTAGCTAACCCT GTGTACCTATCACATTTACATCCGCAGTTGTGCCTATATTTGTTGGAAGTCTCTGGAATTGTCCACCTGATACACTCATG GTGATGGTAGAGTTAAATAGCAATAGGATCATACAAATATGTGCAGAACTATTCCCACCATCCCCTGGATAAAGTAACCA ATCAATTTGTTTTTACATACCCCAAATTTGTTTGCGGTAGAATAAAATTAGGCACCGCAATTTTATCTGCTGTAAGGTTA GGCACCGCAATTTTATTTGCGTTAACGTGGAAGCCACTGTGTTTCTGGGTTTTTTTTATATATATATTGAAGGCAGGCTT AATTCTAAAAATTTGAATCATGTAACACAATCTGGAAATTAAGGAAGCAAGTTTTCGAGGGTCTTAATTCTTCTTCTACT TCTGCATTTGATCAATCTGAGAGAGAGAGAGAGAGATTGAAGAAGAGAAGAGAAAGAGAGAGTAGAGAGAAGGACCATGG AGTGCAAAAAAAAGAAACAGTGGCTTTTATTTTGTGTGGAGTGAAGAGAAGGACCATGGAGGTGGCTTTTAGAAAATGGT GATGTGTTTTATGTAGTGGGAGAAGAGAATGGTTGCTGCAAGAAGAGAAAGAATGGAAGGGACGAAGCAGAGTGAGAACA TCAAAAGGAACAAACGCAGATCTCATAAAATAAACCGACCACATTCTAGTTTGTGGAATGTAAATTGGCTACCGCTTTCT AGAATGCGGGAGCGAGAAGAAAAGGATGGTGAGGGAGATTTAAATCAGGGGTATTTTAGCCTTTTTTTAAAATCGGGGAT GGTGTTATAATGTGTGGGGATGGTATTAGTAGTTTTTCCCGACAAATAAACCAACATTGTTAATTTTTCTACTGTCAAAT TTTGAACTTTTTATTTTACTAGCTGTTTGTATAATATATTGCTCTTTGTTTGTGGCAGAAAGAGCAGGATAAATCAAATG CAGTTGGGAGCATGAAAGTCTCTGATGATGAGCTCACTTGCAGTGTATGCTTGGAGCAAGTCAACGTTGGAGACATACTT CGTAGCTTGCCATGCTTGCATCAGGTCTGTTTCATAGTATAACAATCTCTAACCTTTTAACAAAATGTCTGTTTTCTATT TGTTTGATGATATATTGGTTCAGTTCATATCTGCTAATGGTCACTAATATATGTAAGAAGTAAAAAACAATATAAAGTCA CTTTCAACTTTATTAGAAATAATAGCAGGCTAGTTTTAATCACCTTTTTTCTGCTACTAAGTACAAGCATGGTTGAAGTC CTCATATTTCAGCTATAGTTGAAATTGGATTATGTAAATTGTTGCTGGCATTGCTTTTGTTTTTTAAAACTTTCTTTCTC TCTGGATGTTCCACCATGATCTGCGGTACATCGCGTATCCGTAAATTATATTTTATGTAGTTTTTTTTGTGTGTACTAAA TTACTCTCGCAATTTTGACTCGGGTGTGGTACCAATTGTATGTTTCAAGATTGTGTTGTTTCACTTTTGAGTTGTCGTGA GCTAGTTTCACCATATTTTAATTACAGTATATAATTACATGACACCCTAACAAATTTGTCCAATATTAAATCTAAAATCT GTTTATGTTTGAAACATCTTTTTAAAGTTCTTCGAAGTTATGTAGTTATTTTTCAACTTGCAGTCATGGTAAACCAAAAT GCTTAGATTAATATTCTCTTCTTATTTATTTACTTATCTTAATGTGATACTGATACCTCTTATGTTTTGTTTCTTTATTA AAGTTTCACGCTAATTGCATCGATCCATGGCTGCGGCAACAAGGGACATGCCCTGTCTGTAAATTTCGAGCAGGAACTGG GTGGAGTGAGAGTGGACATAATGACATCGCAGACATGGTTTAA
CDS sequence (LotjaGi6g1v0062800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATACTCAACTCTCATCAGATGTCGCCAAATTTTCTGCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCTACAATGTT AAGGATGTACGCAACATGTCAACAGCTCCAAGCTCAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGCCTTCTTGGCCATA CAGAAGTGCGGTTGCATATGCCTCCATCGATAGCACTTGCAAGTCGAGGGCGTCTGCAGGGTCTCAGACTTCAGCTTGCA CTTCTTGATCGGGAGTTTGATGACCTAGATTATGAAACTTTAAGAGCTCTGGATTCAGATAATGTTTCTACTGCACCTTC TATGACAGAGGAAGAGATAAATGCTCTTCCTGTTCACAAATACAAGGTTTCTGGTCCCTCAAGCAGTGGTTCCTCATTGC CACAAGCATCACCTTCTACTTCTGCCGAGAAAGAGCAGGATAAATCAAATGCAGTTGGGAGCATGAAAGTCTCTGATGAT GAGCTCACTTGCAGTGTATGCTTGGAGCAAGTCAACGTTGGAGACATACTTCGTAGCTTGCCATGCTTGCATCAGTTTCA CGCTAATTGCATCGATCCATGGCTGCGGCAACAAGGGACATGCCCTGTCTGTAAATTTCGAGCAGGAACTGGGTGGAGTG AGAGTGGACATAATGACATCGCAGACATGGTTTAA
Protein sequence (LotjaGi6g1v0062800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGLLGHTEVRLHMPPSIALASRGRLQGLRLQLA LLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVSGPSSSGSSLPQASPSTSAEKEQDKSNAVGSMKVSDD ELTCSVCLEQVNVGDILRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGTGWSESGHNDIADMV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 223 | 223 | 2.5E-120 | – | |
| PANTHER | 1 | 223 | 223 | 2.5E-120 | – | |
| TMHMM | 12 | 31 | 20 | - | – | |
| Phobius | 12 | 31 | 20 | - | – | |
| Phobius | 32 | 224 | 193 | - | – | |
| MobiDBLite | 121 | 154 | 34 | - | – | |
| MobiDBLite | 124 | 153 | 30 | - | – | |
| Gene3D | 135 | 210 | 76 | 2.0E-19 | ||
| SUPERFAMILY | 159 | 208 | 50 | 4.71E-20 | – | |
| CDD | 163 | 205 | 43 | 7.73154E-23 | – | |
| Pfam | 163 | 205 | 43 | 3.8E-13 | ||
| SMART | 164 | 204 | 41 | 1.8E-8 | ||
| ProSiteProfiles | 164 | 205 | 42 | 12.238 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0062800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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