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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0062800 |
Transcript ID | LotjaGi6g1v0062800.5 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RING/U-box superfamily protein; TAIR: AT3G55530.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1; TrEMBL-Plants: tr|A0A0S3RZS1|A0A0S3RZS1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0062800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:11535355..11542034) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGTTTTGTTTTTCGAGGAACAAGAGCAGACATAGAAAATGGGTTTCCGGGATTTATACCTGAGAGGCGTGCATTGGT ATGTAATTTATGTCTCAGTTATTTGCTTAAACGAAGTAGCATAGCTGAAATACATAATGCTATTTTGTTTCTTTGTTTTC TCATTTCATGAATAAAAGCATTGATTAACTAAAACTTCATACTGATTACAATCTTTTCTTCAGCGTGTTCATGCAGCACG TCCTAGTAATTCTAATTCACTCACTTTTCTTGTGACAGGTATTCATGCTTTCACATTATGTGCAATCATTTTAAGTGTAG ATTAATTCTTTTTTCTATATCTTCTTCAATGTTCCATTACAACTTACTGCTTATTTGTTTCAGTTCTCCTGTTATTCATG ATACTCAACTCTCATCAGATGTCGCCAAATTTTCTGGTATGGGTCTTCTGTATGTAAACAAGGGATACACGTTTTTTTCA TTTTGTGAAAAGGGCACTTCAAATTGTTTGAGTGGTTTATGACTGATCAGGTCTTCTTTCTGTTTGTAGCTCTGGCTGGT GCTTGGTGTTTTCTTGATGGCTACAATGTTAAGGATGTACGCAACATGTCAACAGCTCCAAGCTCAGGCCCAAGCTCATG CAGCAGCAGCCAGTGGCCTTCTTGGCCATACAGAAGTGCGGTTGCATATGCCTCCATCGATAGCACTTGCAAGTCGAGGG CGTCTGCAGGGTCTCAGACTTCAGCTTGCACTTCTTGATCGGGAGTTTGATGACCTAGGTTTTGTAGTTCTTTTTCTCCT GTAGTTAATTTATATGCTCCAGTCTTTTCATGTGTCATAATATATTCATATACTTTATTTTTGAATTTCAGATTATGAAA CTTTAAGAGCTCTGGATTCAGATAATGTTTCTACTGCACCTTCTATGACAGAGGAAGAGATAAATGCTCTTCCTGTTCAC AAATACAAGGTTTCTGGTCCCTCAAGGTAAAGTAATCAGTCAGACCAATTGTTGTAATACAATCTTTAAATGGATTCATT ATTTTAAACCAGGAAATCCTATTCTAATAGTATTCTTCTATGCCCCACCTCCTTAAGAAAAGCCCTCTATCAAGAGTATT TTCTAATGTGAATGTGTACGTTCTGCAAGAATTATAACTCACTATTTACATGTCATAAGTCTAATTGTATAGACACATTT GAGGGTTTAAAAGCATAGATCCTATAAATAAATTATATTATTTTCTATTGTGAATGATGTGTTATTGATGACATGAAAAT GCTGATTTGAACTGCCATGTTACTTGGAAAAGAACTTGGGTACGTTTGTGCACTTCTATTTACTCTATTTTGTGTACCCA TTTAATATGACATTTGAAGAGGTTCTTAAACTATACTTTATATGCAAGTAATTGACATGTTAACATGTATTCCAAAGATA TATGCACACACACACATCACTAGTATTGATGTGGGTATTTACTCCTTGAGTTACAATTTTTTATGGCGTCTACCTATTCT GAAAAAATTATAATACTGTTTCTTTGACAAGAAGCTTCTTTTGCTTACAGCAGTGGTTCCTCATTGCCACAAGCATCACC TTCTACTTCTGCCGAGGTATCATTGTTATTTTCCTCCCATCCATTTGGCCTAAACAAGTGAATAATAACATTGCATTTTA TTATAACTTCACTGCTTCCTTGAGGGTATTTATTGTCTTCTGTATGTTATGCCTGTGATTTTCCTGCCCTATTCCTGGCC GTATTGGGAATTGCTGATACCCCTCCAACTGCATCTTGTGATGACTTTGAAGTGGATTTAATATGGCGCATTAATCTTGA TTGAGGACTTTGAAAATTGTGAAACTCATTGTATTATTTTCTTGAATATCATGTTATCATTTTGATAGAACCCAGAAAAT ATAAATGTATTATTAGTTAGAAACATAGTAGTCAATCCCGGATAGCGGCGCGTAGCGGCCGGCCCCAAAAGGGGGATAGC GTGATAGCGCATAGCGGGATGGCCGCTATTCTGAATTTTTTTATGTAATTTTATATCATTAATAGTTTAATACTATATAC ATATAAATAGCAAACAATGTCAAATATTGCCTAAAATTCATAACATTCATAATAGAAATAAAAATCATAAGTCTTGAACA ATAACACACAACTAATAACTTCTCAAAAGCAAGGTAAAGAAGTCGAATTTGCAAATCTGAATGAAGAATGAAGCTTAATT CTTTCAATTTTGACCTATAATGGCCCTGAGAAGTCCTAACATGCCCATAAAAAGGTTCCCCAACGATTTAAAACGAAGGG GCTTGAGTCATTTTCTCCTTCGTTCATATAGCGCCGCTATTTCCCGCTATTGGCCGCGATCTGCCGCTATTTTGGCCGCT ATTCGCGCCGCTACGACCGCTATTGTGAAGTTGGCCGCTATTTCATCTCAATAGCGGCAGGGAGCCGCTCCGCTCCGCTA CACCGCTATAGCGCCGCTATTTGCCGCTATTGACTACTATGGTTAGAAACCCTAAATCCCAAATAAGAACTAGGGGAAGA TACAAGGAAGAGATACCAAACACCCTCCCTAAACCCTAGAGAGACCCAACACTCTCTAAACCTAATTTCCAAAGTCAATA CAAAGATAACCCAATGCTCTCTAGTCACTCTTATTTATAGGCACATGCCTCTTTAACCCAACAACTAACTAATGTCCCCG CTTAACTACTAACTAGCTAACCCGGTGCACCTATCAATACTCCCCCCTGAAAATTCACCTTGTCCTCAAGGTGAAGGACT TGGATCCAATTGCTGAATATTCGCAACTCTTCCACCCGGATCCCATTGCTGAAACTGCAAATAGTACACATTGCATTAAG TGTTGAGCCAATTTCCCACATAACTGTGGAAAAATAGTCCTCCTGGATCCCGCACCAGTCTCCTTGGATCCACAAAATCC TTGATAGAATGAGTTTGGCCCAATGAGCCCAAACAGTGATACCCATCTTCAGCTCTCCAATTTTGTTCAACTTTTTCTGC CTTCCAAACCCATTTTAAGATATGGGCTTGACCCACCTTTTCTCTCCCACTAGTATACCCTAACAAAGGTGCCAGGCCTA GGATTATCACTCCAATGTGGCAGCCCAATGCTGCTTGGGTCATGTGTGGCCAGTACCACTTTTTCTTCCTGCCTTGTGTC TACTCTTAGTGGCTCCTGCAGAAGGTTTTTGGCACTTGGAAAGCAAGCCTTTTTTCTGTTTCCTCCATGCGCTGCCAGCA AGCAACTTCGACTTTTGCAACAGGACACCTGGCTCACTGTTCTCTTTATTGAAGATTTTAGCAGTTTACTTCTGCCAAAC CACATTAGTATTGAATGATAGAGAAGTGACATCGAATGTGAACCTGTGTCTCACTCGCAAGTCGAAACCTTTGGCTGTTT GTCTCTCTACGGCCAAAATCGTCTCTGCCACCATGTGCATATAGTTCTCCAGCGACTCCAGCGGTGGTTGCTGGACCGGC ATCAGTGTTATCAAATAGCGGCGCTATAGCGTAGCGGATTTTTGGCTAATCGCGACGCTGCTATTGCCCGCTATAGCGCG CTATTCCCGCTATTCGCCGCCAAGTAGCGGCTGAAATAGCGGATTTTGGGCGCACCGCGATGGTCCCCGATCGCGATTTG ATAACACTGACCGGCATGCCTCGCCTTGCTTGCTATTACTAGGGCAGCTTGGGTCTCCATAGGCATCTCACAATACGGCG GTTCTTGCGGCAGAATTATAGCACCACCTCTGTCACAATGGCCTCGATCACCGGCGAATTGTCGACCACCCTGGTATGAC GGTTTTGACTGCGGTTGTTCTCAGAACCGCTGTTGTTGCGACAGAAACTTCACCAAATCCGCCATCCTCGTCGTCCACCC AGGCCTCATCGTAAGGTGGTTTCGGTGGAGGTCGTATGAGCGCTCCCATATTTCTCTTGCCCAACAACTTCATCTCTGCA CATGCGAAGTGATGTCGCCGGAACTCCGCCACTGACGACACCATGCGAAGTGATGTCGCCGGAGCTCCTTTCGCAACGCC TCCGCTGCTACTCGTTTATCCTCCGCTGCTTCAAGATTGGATTTTCGTGACGCTGCAATCTCTGATGGCCTCTTAAACGC CTTCGCTGCCGCTATCTCTGCCTCCAACGCGACTTCAGAAGTTTACTAAAAAACCGCTGCATCTGGCCTTTCTTTTGCTG CGGTGTCCGATCCCTTCAGCGACGCCACTGCCGTTGTTCGCTCTGCCTCGGTTGCCGCCTCCGATTCTCTCCTTTCTTGT TCCCTCTTCTGTCTCCTCTCACTTTCTTTCTGTAATCTCTCACTTTCCTTTCTCAATTCTGTTATTTCTCTGACAAGTGC ACAAATCTCCTCCTCTTGCGATGACAGAGAAGACGAGAAATCCTCCTTTCTCTTGCCAGCCATCTGCTCCTTATATACTG TTTGCTGTAGGATTATCTTGGTCAGGGCACCTAAATCGGTGCTCTGATACCAATGATAGAACCCAGAAAATATGAATGTA TCATTAGTTAGAAACCCTAAATCCCAAATAAGAACTAGGGGGAAGAATGACGATACAAGGAAGAGATACCAAACACCCTC CCTAAACCCTAGAGAGACCCAACGCTCTCTAAACCTAATTTCCGAAGTCAATACAAAGATAACCTAATGCTCTCTAGTCA CTCTTATTTATTGGCACATGCCTCTTAAACCCAATAGCTAACTAATATCCCCGCTTAACTACTAACTAGCTAACCCTGTG TACCTATCACATTTACATCCGCAGTTGTGCCTATATTTGTTGGAAGTCTCTGGAATTGTCCACCTGATACACTCATGGTG ATGGTAGAGTTAAATAGCAATAGGATCATACAAATATGTGCAGAACTATTCCCACCATCCCCTGGATAAAGTAACCAATC AATTTGTTTTTACATACCCCAAATTTGTTTGCGGTAGAATAAAATTAGGCACCGCAATTTTATCTGCTGTAAGGTTAGGC ACCGCAATTTTATTTGCGTTAACGTGGAAGCCACTGTGTTTCTGGGTTTTTTTTATATATATATTGAAGGCAGGCTTAAT TCTAAAAATTTGAATCATGTAACACAATCTGGAAATTAAGGAAGCAAGTTTTCGAGGGTCTTAATTCTTCTTCTACTTCT GCATTTGATCAATCTGAGAGAGAGAGAGAGAGATTGAAGAAGAGAAGAGAAAGAGAGAGTAGAGAGAAGGACCATGGAGT GCAAAAAAAAGAAACAGTGGCTTTTATTTTGTGTGGAGTGAAGAGAAGGACCATGGAGGTGGCTTTTAGAAAATGGTGAT GTGTTTTATGTAGTGGGAGAAGAGAATGGTTGCTGCAAGAAGAGAAAGAATGGAAGGGACGAAGCAGAGTGAGAACATCA AAAGGAACAAACGCAGATCTCATAAAATAAACCGACCACATTCTAGTTTGTGGAATGTAAATTGGCTACCGCTTTCTAGA ATGCGGGAGCGAGAAGAAAAGGATGGTGAGGGAGATTTAAATCAGGGGTATTTTAGCCTTTTTTTAAAATCGGGGATGGT GTTATAATGTGTGGGGATGGTATTAGTAGTTTTTCCCGACAAATAAACCAACATTGTTAATTTTTCTACTGTCAAATTTT GAACTTTTTATTTTACTAGCTGTTTGTATAATATATTGCTCTTTGTTTGTGGCAGAAAGAGCAGGATAAATCAAATGCAG TTGGGAGCATGAAAGTCTCTGATGATGAGCTCACTTGCAGTGTATGCTTGGAGCAAGTCAACGTTGGAGACATACTTCGT AGCTTGCCATGCTTGCATCAGGTCTGTTTCATAGTATAACAATCTCTAACCTTTTAACAAAATGTCTGTTTTCTATTTGT TTGATGATATATTGGTTCAGTTCATATCTGCTAATGGTCACTAATATATGTAAGAAGTAAAAAACAATATAAAGTCACTT TCAACTTTATTAGAAATAATAGCAGGCTAGTTTTAATCACCTTTTTTCTGCTACTAAGTACAAGCATGGTTGAAGTCCTC ATATTTCAGCTATAGTTGAAATTGGATTATGTAAATTGTTGCTGGCATTGCTTTTGTTTTTTAAAACTTTCTTTCTCTCT GGATGTTCCACCATGATCTGCGGTACATCGCGTATCCGTAAATTATATTTTATGTAGTTTTTTTTGTGTGTACTAAATTA CTCTCGCAATTTTGACTCGGGTGTGGTACCAATTGTATGTTTCAAGATTGTGTTGTTTCACTTTTGAGTTGTCGTGAGCT AGTTTCACCATATTTTAATTACAGTATATAATTACATGACACCCTAACAAATTTGTCCAATATTAAATCTAAAATCTGTT TATGTTTGAAACATCTTTTTAAAGTTCTTCGAAGTTATGTAGTTATTTTTCAACTTGCAGTCATGGTAAACCAAAATGCT TAGATTAATATTCTCTTCTTATTTATTTACTTATCTTAATGTGATACTGATACCTCTTATGTTTTGTTTCTTTATTAAAG TTTCACGCTAATTGCATCGATCCATGGCTGCGGCAACAAGGGACATGCCCTGTCTGTAAATTTCGAGCAGGAACTGGGTG GAGTGAGAGTGGACATAATGACATCGCAGACATGGTTTAA
CDS sequence (LotjaGi6g1v0062800.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTTTGTTTTTCGAGGAACAAGAGCAGACATAGAAAATGGGTTTCCGGGATTTATACCTGAGAGGCGTGCATTGCG TGTTCATGCAGCACGTCCTAGTAATTCTAATTCACTCACTTTTCTTGTGACAGTTCTCCTGTTATTCATGATACTCAACT CTCATCAGATGTCGCCAAATTTTCTGCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCTACAATGTTAAGGATGTACGCA ACATGTCAACAGCTCCAAGCTCAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGCCTTCTTGGCCATACAGAAGTGCGGTT GCATATGCCTCCATCGATAGCACTTGCAAGTCGAGGGCGTCTGCAGGGTCTCAGACTTCAGCTTGCACTTCTTGATCGGG AGTTTGATGACCTAGATTATGAAACTTTAAGAGCTCTGGATTCAGATAATGTTTCTACTGCACCTTCTATGACAGAGGAA GAGATAAATGCTCTTCCTGTTCACAAATACAAGGTTTCTGGTCCCTCAAGCAGTGGTTCCTCATTGCCACAAGCATCACC TTCTACTTCTGCCGAGAAAGAGCAGGATAAATCAAATGCAGTTGGGAGCATGAAAGTCTCTGATGATGAGCTCACTTGCA GTGTATGCTTGGAGCAAGTCAACGTTGGAGACATACTTCGTAGCTTGCCATGCTTGCATCAGTTTCACGCTAATTGCATC GATCCATGGCTGCGGCAACAAGGGACATGCCCTGTCTGTAAATTTCGAGCAGGAACTGGGTGGAGTGAGAGTGGACATAA TGACATCGCAGACATGGTTTAA
Protein sequence (LotjaGi6g1v0062800.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFVFRGTRADIENGFPGFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYA TCQQLQAQAQAHAAAASGLLGHTEVRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEE EINALPVHKYKVSGPSSSGSSLPQASPSTSAEKEQDKSNAVGSMKVSDDELTCSVCLEQVNVGDILRSLPCLHQFHANCI DPWLRQQGTCPVCKFRAGTGWSESGHNDIADMV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 35 | 35 | - | – | |
PANTHER | 1 | 272 | 272 | 2.4E-147 | – | |
PANTHER | 1 | 272 | 272 | 2.4E-147 | – | |
TMHMM | 34 | 51 | 18 | - | – | |
Phobius | 36 | 54 | 19 | - | – | |
Phobius | 55 | 60 | 6 | - | – | |
TMHMM | 61 | 80 | 20 | - | – | |
Phobius | 61 | 80 | 20 | - | – | |
Phobius | 81 | 273 | 193 | - | – | |
MobiDBLite | 170 | 203 | 34 | - | – | |
MobiDBLite | 173 | 202 | 30 | - | – | |
Gene3D | 184 | 259 | 76 | 2.8E-19 | ||
SUPERFAMILY | 208 | 257 | 50 | 6.8E-20 | – | |
CDD | 212 | 254 | 43 | 4.00613E-23 | – | |
Pfam | 212 | 254 | 43 | 5.2E-13 | ||
SMART | 213 | 253 | 41 | 1.8E-8 | ||
ProSiteProfiles | 213 | 254 | 42 | 12.238 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0062800.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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