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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0063500 |
| Transcript ID | LotjaGi6g1v0063500.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribulose bisphosphate carboxylase/oxygenase activase; TAIR: AT2G39730.2 rubisco activase; Swiss-Prot: sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic; TrEMBL-Plants: tr|A0A1J7G550|A0A1J7G550_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0063500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:11728337..11731162) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTTTAGTTAAGCTTAATCCCACTTTTGCTCCCCTATTTTGGACTATGTGTAATTTCTCTTAGCTTTAGCTTTTGCT TCTGTCCAAACATGCATTTACTCCCCCAATAGTTTTCTAACAAATTTAGTCACTCAACTTTTCAATTGTTGCAAATCAAG TCTCTCTATCATTATAATTCTGCTTCAAACTTTCAAATTCTAGTTTTCTAAGAAAAATCTTCATAAATTGAATCAATTTA ATCATCATAGACGCTACTGTGATGTATATTGCAGTTGAGCTTGAATGGTTCTGGAGCTGGAGCTTCAGTTCCCAGTTCAG CTTTCTTTGGCAGCAGCTTGAAGAAAGTTATCTCAAGGCTCCCCAACACCAAGGTTTCCAATGGAAGCTTCAAAATTGTT GCTGCAGAGATTGATGAGAGCAAGCAGACTGACGGAGACAGATGGAGGGGTCTGGCCTACGATATTTCCGATGACCAGCA AGACATCACAAGAGGGAAGGGCATGGTTGACCCCCTCTTCCAAGCTCCACAGAATGCCGGAACTCACTATGCAGTCATGA GCTCTTATGAGTACATTAGCACCGGTCTTCGCCAGTGAGTAACACATGCTGTGAATTTTAACTCAAATTGTGTTGTTTGC TTTTGAATGATGAAGCTTCTTTTGAATTTTAAACTTATTACGTGGTTATTATGGTGTTTCAGGTACAACTTTGACAACAC CGAGGGTGGATTTTACATTGCTCCCGCTTTCATGGACAAGCTTATTGTTCACATCACCAAGAACTTCTTGACCCTGCCCA ACATCAAGGTATGTAATTAGCATACATGAATGAGTTAATGAACAAAACTGCAGTATGACTTTAGCAGAATTGGGTGAAAC ATTCAATACTTTCATTGTTTTTTGCAGGTTCCTCTCATTCTTGGTATCTGGGGGGGCAAAGGACAAGGAAAATCTTTCCA ATGTGAGCTTGTCTTCCAAAAGATGGGAATCAAGTGAGTACTTTCTCTACTAGGCCCTCTTAAATTTAACTCCATGCACC CTGCTAGTACATAGATATGAAGTATTGAACCTCACAACTTTGAAATTAAAACTCAACAACTGATACGTAATGTGTTCCAA TGGAATAACATATTATATATGTTATGCTACATAATCTGCTACAAGTGTTTAATGGCTAGACATAATGAGTGTATGTTATA TCATATTGCCATATGATAGTTAGATTAAATTCAAAGAAAACAAAAAAGATAATGAAATATGATAAGACTATTAGAGTATG AGAGGGTGTCAAAGAAGATGCGAGAACTGTATAACGACGGGCTTAAAAGATAAGACTAGTATAGTGCTCCAACACTACAC ATTGACCCAAAACCTTAAAGCAATGAGTCTGTGGGTATAACGAGATTCAAAGTGAATCTAGAAGAAAGAAATTGCAGAGA ACTGCAGAAATTTTACTGAATGAATGAGTCTTTCATTACTTGCTCAACTCAGTTCTATGAGCTAATATACATGTACAAAA TGTAACTAACAATGTGAAAGTAATGCTAACTAACTAATATCAAACTTGATTAGTTAGATTACTACTCACTCTAATTAACA ATTAACTCTATACTTAAGAGTAACAACTCACTTAATTGCTAACTATCGCCATCTTTTAATCAATGTTATGTTGAACTTAT TACTCACATATATATATATGTATGTGTAAAACAGTTTACATTGTCGGTGTATACTAATTAAATTCAACTTCTAATGTCTG TGCGATGTTGCAATTACATTCCAGCCCCATCATGATGAGTGCTGGAGAGCTGGAAAGTGGAAATGCAGGAGAACCCGCGA AGTTGATCAGGCAGAGATACCGCGAAGCTGCTGATATAATCAGGAAGGGAAAGATGTGTGCTCTCTTCATCAACGATCTT GATGCAGGTGCAGGTCGTATGGGTGGAACCACCCAGTACACTGTCAACAACCAGATGGTTAACGCCACCCTCATGAACAT TGCTGATAACCCCACAAATGTGCAGCTCCCCGGCATGTACAACAAGGAAGACAACCCCCGTGTGCCCATCGTTGTCACCG GTAACGATTTCTCAACACTGTATGCTCCTCTCATCCGTGACGGGCGTATGGAGAAGTTCTACTGGGCGCCTACAAGGGAA GACCGCATCGGTGTCTGCAAGGGGATTTTCCAAACTGACAATGTGTCTGAAGAGGCTGTTGTCACGATTGTTGACACCTT CCCTGGTCAATCCATCGGTAAGTACCCTGCAACGTCAGCTTATTTTTACACAGAATCAATTCTAACACCCAGAAGCTAGT CAGAGAAGCTTCTACTAAGAATTGGTTTGATTTTAGAATCAATTATAGAAGAATTTCCAAATATGTATATGCGGTACTAA CACTATACTGCCTTTTGTGGTGCTGTAGATTTCTTTGGTGCATTGAGGGCTAGAGTGTATGATGATGAAGTGAGGAAGTG GATTTCTGGTGTTGGTGTTGATTTGATTGGAAAGAAGCTTGTGAACTCAAAGGAAGGACCTCCAGTATTTGAGCAGCCCA AGATGACCCTGGAGAAGCTCTTGGAGTATGGTAACATGCTTGTGCAAGAACAAGAGAATGTGAAGAGAGTCCAGTTGGCT GACAAGTACTTGAATGAAGCTGCTCTTGGTAATGCTAATGACGATGCTATCAAGAGGGGAACTTTCTAAGCCTTCATTGG AGGTTTGCATCTAGCTTTATATCCCTCTAACTAGGACAATTATATTAAGTTCAAACAAAACTTGGTCTGAGATCTTGAGT TAATTGTTTTCTGTGCAGGCAAGTAA
CDS sequence (LotjaGi6g1v0063500.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGACCCCCTCTTCCAAGCTCCACAGAATGCCGGAACTCACTATGCAGTCATGAGCTCTTATGAGTACATTAGCAC CGGTCTTCGCCAGTACAACTTTGACAACACCGAGGGTGGATTTTACATTGCTCCCGCTTTCATGGACAAGCTTATTGTTC ACATCACCAAGAACTTCTTGACCCTGCCCAACATCAAGGTTCCTCTCATTCTTGGTATCTGGGGGGGCAAAGGACAAGGA AAATCTTTCCAATGTGAGCTTGTCTTCCAAAAGATGGGAATCAACCCCATCATGATGAGTGCTGGAGAGCTGGAAAGTGG AAATGCAGGAGAACCCGCGAAGTTGATCAGGCAGAGATACCGCGAAGCTGCTGATATAATCAGGAAGGGAAAGATGTGTG CTCTCTTCATCAACGATCTTGATGCAGGTGCAGGTCGTATGGGTGGAACCACCCAGTACACTGTCAACAACCAGATGGTT AACGCCACCCTCATGAACATTGCTGATAACCCCACAAATGTGCAGCTCCCCGGCATGTACAACAAGGAAGACAACCCCCG TGTGCCCATCGTTGTCACCGGTAACGATTTCTCAACACTGTATGCTCCTCTCATCCGTGACGGGCGTATGGAGAAGTTCT ACTGGGCGCCTACAAGGGAAGACCGCATCGGTGTCTGCAAGGGGATTTTCCAAACTGACAATGTGTCTGAAGAGGCTGTT GTCACGATTGTTGACACCTTCCCTGGTCAATCCATCGATTTCTTTGGTGCATTGAGGGCTAGAGTGTATGATGATGAAGT GAGGAAGTGGATTTCTGGTGTTGGTGTTGATTTGATTGGAAAGAAGCTTGTGAACTCAAAGGAAGGACCTCCAGTATTTG AGCAGCCCAAGATGACCCTGGAGAAGCTCTTGGAGTATGGTAACATGCTTGTGCAAGAACAAGAGAATGTGAAGAGAGTC CAGTTGGCTGACAAGTACTTGAATGAAGCTGCTCTTGGTAATGCTAATGACGATGCTATCAAGAGGGGAACTTTCTAA
Protein sequence (LotjaGi6g1v0063500.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDPLFQAPQNAGTHYAVMSSYEYISTGLRQYNFDNTEGGFYIAPAFMDKLIVHITKNFLTLPNIKVPLILGIWGGKGQG KSFQCELVFQKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRMGGTTQYTVNNQMV NATLMNIADNPTNVQLPGMYNKEDNPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFQTDNVSEEAV VTIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDLIGKKLVNSKEGPPVFEQPKMTLEKLLEYGNMLVQEQENVKRV QLADKYLNEAALGNANDDAIKRGTF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 345 | 345 | 5.9E-232 | – | |
| PANTHER | 1 | 345 | 345 | 5.9E-232 | – | |
| Gene3D | 34 | 217 | 184 | 1.1E-41 | – | |
| SUPERFAMILY | 51 | 249 | 199 | 6.82E-21 | ||
| Pfam | 73 | 214 | 142 | 2.6E-14 | ||
| Gene3D | 218 | 330 | 113 | 2.9E-48 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi6g1v0063500.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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