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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0101500 |
| Transcript ID | LotjaGi6g1v0101500.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing family protein; TAIR: AT1G27910.1 plant U-box 45; Swiss-Prot: sp|Q9C7G1|PUB45_ARATH U-box domain-containing protein 45; TrEMBL-Plants: tr|A0A0B2QRR9|A0A0B2QRR9_GLYSO U-box domain-containing protein 6; Found in the gene: LotjaGi6g1v0101500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:22317011..22320465) extracted from Lotus japonicus Gifu genome v1.2.
GCAAGTGATGCCAAGGTATGTATCATCATGTATTGTATCTGCTAGACATGTTTTTCAATTCTCATGTTTTATAGTACATA GTAAAGAAACAAACATTGTGTAATCGAAAACAATGTAGTTAGAAAACGCGAAGTCCTTATGCTAAGGTGCTATTAAGCAT AAGGAGTCTTAATCACTTTTATATTACTTGTTTAGCTTTTGTGTTGCTTTTTTAAAACTTGTGGCAGTGAATTCTCTGAA TCAATGTAATCTACATGTTTTCACATGCAGCTACATGTAGAAATGTGCAGGCGTCTTTCTGCAATATATTGCAAAATATT GTCAATATTTCCTACTTTAGAAGCAGCTAGGCCGAGGAGCAAATCCGGAATCCAGGCATTATGTTCATTGCATGTAGCGT TGGAGAAGGGAAAGAATGTTCTTCAGCACTGCTCAGAGTCTAGCAAACTTTACTTGGTATTAATAACATTGCTGCTTTTG CTTGTATTTTGGTTTTACGTATATTTTCTGATTTTGTCTCCCTGTATGTAAGGTGGATTTAATTTTCTTATTTTTGGTGG TTTATAAGGCTATCTAATCTGTTTTATAGAGTATCTTACATATAACTTCACTTACGATGCAGGCTATAACTGGGGATTCT GTACTTCTGAAATTTGAGAAGGCTAAGTGTGCTCTTGAAGATAGTCTTAAACAGGTGGAAGATATTGTTCCTCAATCTAT TGGGTGTCAGGTAATAAATTTCAACAATATGCCTGTATAATTCTCTTTTCCATGTTTGATTTTACCTTTTCTTTGATTCT GGGTTCATGGTCTTTTTCAGTCATGGGATTGGTTGCAGTTTTCTTAACAATGATTCTTGTATTCAAATGTACTTACATAT TGAGATTTGAGAGTTTGATTTTTAATTTTTTCCTGCGATTGGTATTTGTTCAGATTGATGAAATTGTGAATGAACTTACT GGTTTGGAATTTGCACTTGACCCATTGGAGAAGCTTGTTGGGGATGATTTAATTGCATTGCTTCAACAGGAGAGAAAGTT TAACAACTCAAATGAGAGTAGTGAACTTGAATGTTTTCATCTTTCTGCTACAAGACTTGGAATCACCTCTTCAAGAGTGG CTCTTTCTGAAAGAAGAGCTCTCAAAAAACTCATAGAAAGGGCTCGGGCTGAGGATGACAAGCGGAAGGAGTCAATTATT GCATATCTTTTACACCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTTTCTGATGATAATGATTCTCAGGGTTC CCAACCTTGTTCTCCTACTGTTCAGAAATCTCTCGAGTACGGTGCTAATGGGGGTCCTTGTCAGGCCTTTGACAGACAGC TTTCAAAACTTAATTCCTTTAATTTAAAGCCTAATAATAGGAAATCTGGGCAGATGCTCCTTCCCCCCGAAGAGTTAAGG TGTCCAATATCTCTGCAGCTTATGAGTGATCCTGTCATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGTATAGAAAA GTGGTTCAGTGATGGGCACAACACCTGTCCAAAGACTCGGCAGAAACTTTCACATCTTTATTTGACTCCTAATTACTGTG TTAAGGGCCTTGTGGCAAGTTGGTGTGAACAGAATGGAGTTCCTATTCCTGAAGGTCCTCCGGAATCTCTTGATTTTAAC TACTGGAGATTGGCATTATCGGATTCTGAGTCCATGAATACAAGATCTGTAAACAGTGTCAACTCTTGCAAAATGAAGTG TGTCAAAGTTGTTCCTCTAGAAGATAGCGGTGTCTCAGTGCAAACTGAGGGAGATGCAACCGAAAGTTTGTCTGCACAAG AGGAAGAATATGAGCAGTATTTTAGTTTTCTGAAAGTATTGACTGAAGGGAATAATTGGAAGAGGAAGTGTAAAGTGGTA GAACAGTTAAGGCTGTTGCTGCGGGATGATGAAGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGAAGCACTTAT GCAGTTTTTGCTATCAGCTGTGCGTGAAGGGTGTTCGATGGCTCAGGAAAGTGGAGCTATGGCTCTGTTCAACCTGGCTG TGAATAACAACAGGTGTGTATTAACAGATCTAGATTGGAACAGTAATGTAGAACTGCTTTCAATATCTTCACAAATTGAA AAACTCATGTTACTGGAAAATTAAGAACATTGTATTTAATATTTATCCAACACCATGATAAAAAAATATCTTCATTATTA CAATGATCTGGTTCTTTCGTTTGCCATTCTCAAGCTCTTACAGAAACAATGGCATAGTTCCCGCAAATTCATGTAAACTG GTCGTAAAATAACTTGCGAAAATTGATTTTAAGGTTTATATAAGCATCTGTTGTGATATTTCCCAAAGGAAAAAGTACTT GCAGGAGGAGAGAAAGATAGAGTAGATGTGCTTATTGCACCAGTGGATGTTGAAAACTGATACTGACACATTGAATTACA ACCTTTAGTTAGGATGTCCCAATGACCAACGGGGCTGAAGTTTGTTGATGAAATAGTAGAATTAATATTCCATTAATAAA TACTAGCTGAATTTGTATAATGACTACTTTTTTCGTTATTTCTTTCATTATTTTCTATTATGCAAATCATTAACATAAGC TTGTTCTTTTTCTTTTCAAAAGAAATAAGGAAATCATGATATCTGTGGGAATCCTATCATTGTTGGAGGAAATGATTTTG AAACCTCACTCATACGGTTGTGCAGCCGCCCTGTATCTGAATCTTACTTGCCATGAAGAAGCCAAGCAAATAGTCGGAAC GAGTCAGGCTGTCCAATTCCTAATCCATATTCTTCAATCCAATACTGAAGTCCAGTGCAAGCTAGATTCCCTCCATGCAC TCTATAATCTTTCTACTGTGTCCTCTAATATTTCATACCTCCTTTCATCAGGCATCATGAATGGTCTACAGTCCCTTCTT GTAGGCCAGGATGACTCCATGTGGACAGAAAAGTGCATTGCTGTTTTGATAAACTTGGCTGTTTCTCAAGTTGGAAGAGA AGAAATTATGTGTACTCCGGGACTCATAGGCGCACTGGCTTCGATACTGGATACTGGTGAACTCCTAGAGCAGGAGCAAG CTGTTTATTGTCTCCTAATTTTGTGTAACAGGAATGAGAAATGTTGTGAGATGGTCCTTCAAGAAGGAGTTATACCTGCG CTGGTCTCGATATCAGTGAATGGGACGTCAAGAGGGAGAGAAAAAGCTCAGAAGCTCTTGATGCTCTTCAGAGAGCAGCG ACAACGAGACCATTCACCTGCTAAGGCGGCACATCAATGCAAACCTGAAACTAGTGATTTGTCCATGCCTCCTCCTGAAG AGAAACCTCTATGTAAGTCAATGTCTAGAAGAAGGGTGGGGAAAGCTTTTAGCTTTCTCTGGAAAAGCAAGAGCTATTCT GTCTACCAGTGTTAA
CDS sequence (LotjaGi6g1v0101500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCAGGCGTCTTTCTGCAATATATTGCAAAATATTGTCAATATTTCCTACTTTAGAAGCAGCTAGGCCGAGGAGCAA ATCCGGAATCCAGGCATTATGTTCATTGCATGTAGCGTTGGAGAAGGGAAAGAATGTTCTTCAGCACTGCTCAGAGTCTA GCAAACTTTACTTGGCTATAACTGGGGATTCTGTACTTCTGAAATTTGAGAAGGCTAAGTGTGCTCTTGAAGATAGTCTT AAACAGGTGGAAGATATTGTTCCTCAATCTATTGGGTGTCAGATTGATGAAATTGTGAATGAACTTACTGGTTTGGAATT TGCACTTGACCCATTGGAGAAGCTTGTTGGGGATGATTTAATTGCATTGCTTCAACAGGAGAGAAAGTTTAACAACTCAA ATGAGAGTAGTGAACTTGAATGTTTTCATCTTTCTGCTACAAGACTTGGAATCACCTCTTCAAGAGTGGCTCTTTCTGAA AGAAGAGCTCTCAAAAAACTCATAGAAAGGGCTCGGGCTGAGGATGACAAGCGGAAGGAGTCAATTATTGCATATCTTTT ACACCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTTTCTGATGATAATGATTCTCAGGGTTCCCAACCTTGTT CTCCTACTGTTCAGAAATCTCTCGAGTACGGTGCTAATGGGGGTCCTTGTCAGGCCTTTGACAGACAGCTTTCAAAACTT AATTCCTTTAATTTAAAGCCTAATAATAGGAAATCTGGGCAGATGCTCCTTCCCCCCGAAGAGTTAAGGTGTCCAATATC TCTGCAGCTTATGAGTGATCCTGTCATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGTATAGAAAAGTGGTTCAGTG ATGGGCACAACACCTGTCCAAAGACTCGGCAGAAACTTTCACATCTTTATTTGACTCCTAATTACTGTGTTAAGGGCCTT GTGGCAAGTTGGTGTGAACAGAATGGAGTTCCTATTCCTGAAGGTCCTCCGGAATCTCTTGATTTTAACTACTGGAGATT GGCATTATCGGATTCTGAGTCCATGAATACAAGATCTGTAAACAGTGTCAACTCTTGCAAAATGAAGTGTGTCAAAGTTG TTCCTCTAGAAGATAGCGGTGTCTCAGTGCAAACTGAGGGAGATGCAACCGAAAGTTTGTCTGCACAAGAGGAAGAATAT GAGCAGTATTTTAGTTTTCTGAAAGTATTGACTGAAGGGAATAATTGGAAGAGGAAGTGTAAAGTGGTAGAACAGTTAAG GCTGTTGCTGCGGGATGATGAAGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGAAGCACTTATGCAGTTTTTGC TATCAGCTGTGCGTGAAGGGTGTTCGATGGCTCAGGAAAGTGGAGCTATGGCTCTGTTCAACCTGGCTGTGAATAACAAC AGAAATAAGGAAATCATGATATCTGTGGGAATCCTATCATTGTTGGAGGAAATGATTTTGAAACCTCACTCATACGGTTG TGCAGCCGCCCTGTATCTGAATCTTACTTGCCATGAAGAAGCCAAGCAAATAGTCGGAACGAGTCAGGCTGTCCAATTCC TAATCCATATTCTTCAATCCAATACTGAAGTCCAGTGCAAGCTAGATTCCCTCCATGCACTCTATAATCTTTCTACTGTG TCCTCTAATATTTCATACCTCCTTTCATCAGGCATCATGAATGGTCTACAGTCCCTTCTTGTAGGCCAGGATGACTCCAT GTGGACAGAAAAGTGCATTGCTGTTTTGATAAACTTGGCTGTTTCTCAAGTTGGAAGAGAAGAAATTATGTGTACTCCGG GACTCATAGGCGCACTGGCTTCGATACTGGATACTGGTGAACTCCTAGAGCAGGAGCAAGCTGTTTATTGTCTCCTAATT TTGTGTAACAGGAATGAGAAATGTTGTGAGATGGTCCTTCAAGAAGGAGTTATACCTGCGCTGGTCTCGATATCAGTGAA TGGGACGTCAAGAGGGAGAGAAAAAGCTCAGAAGCTCTTGATGCTCTTCAGAGAGCAGCGACAACGAGACCATTCACCTG CTAAGGCGGCACATCAATGCAAACCTGAAACTAGTGATTTGTCCATGCCTCCTCCTGAAGAGAAACCTCTATGTAAGTCA ATGTCTAGAAGAAGGGTGGGGAAAGCTTTTAGCTTTCTCTGGAAAAGCAAGAGCTATTCTGTCTACCAGTGTTAA
Protein sequence (LotjaGi6g1v0101500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCRRLSAIYCKILSIFPTLEAARPRSKSGIQALCSLHVALEKGKNVLQHCSESSKLYLAITGDSVLLKFEKAKCALEDSL KQVEDIVPQSIGCQIDEIVNELTGLEFALDPLEKLVGDDLIALLQQERKFNNSNESSELECFHLSATRLGITSSRVALSE RRALKKLIERARAEDDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQKSLEYGANGGPCQAFDRQLSKL NSFNLKPNNRKSGQMLLPPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFSDGHNTCPKTRQKLSHLYLTPNYCVKGL VASWCEQNGVPIPEGPPESLDFNYWRLALSDSESMNTRSVNSVNSCKMKCVKVVPLEDSGVSVQTEGDATESLSAQEEEY EQYFSFLKVLTEGNNWKRKCKVVEQLRLLLRDDEEARIFMGANGFVEALMQFLLSAVREGCSMAQESGAMALFNLAVNNN RNKEIMISVGILSLLEEMILKPHSYGCAAALYLNLTCHEEAKQIVGTSQAVQFLIHILQSNTEVQCKLDSLHALYNLSTV SSNISYLLSSGIMNGLQSLLVGQDDSMWTEKCIAVLINLAVSQVGREEIMCTPGLIGALASILDTGELLEQEQAVYCLLI LCNRNEKCCEMVLQEGVIPALVSISVNGTSRGREKAQKLLMLFREQRQRDHSPAKAAHQCKPETSDLSMPPPEEKPLCKS MSRRRVGKAFSFLWKSKSYSVYQC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 703 | 703 | 0.0 | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| PANTHER | 1 | 703 | 703 | 0.0 | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 744 | 723 | - | – | |
| SUPERFAMILY | 255 | 333 | 79 | 3.24E-29 | – | |
| ProSiteProfiles | 257 | 331 | 75 | 41.223 | ||
| Gene3D | 258 | 331 | 74 | 2.3E-27 | ||
| Pfam | 259 | 328 | 70 | 2.6E-19 | ||
| SMART | 261 | 324 | 64 | 2.2E-34 | ||
| CDD | 262 | 304 | 43 | 3.60222E-26 | – | |
| Gene3D | 391 | 692 | 302 | 4.3E-29 | ||
| SUPERFAMILY | 408 | 681 | 274 | 8.96E-28 | ||
| SMART | 433 | 477 | 45 | 7.1 | ||
| ProSiteProfiles | 444 | 490 | 47 | 8.732 | ||
| SMART | 518 | 559 | 42 | 4.8 | ||
| MobiDBLite | 687 | 718 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi6g1v0101500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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