Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0112400 |
| Transcript ID | LotjaGi6g1v0112400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT2G29670.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q54NS3|Y5095_DICDI TPR repeat-containing protein DDB_G0285095; TrEMBL-Plants: tr|A0A0L9VD14|A0A0L9VD14_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0112400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:26467016..26471236) extracted from Lotus japonicus Gifu genome v1.2.
GCAACCTTTGAAGTCATATAAACCGAAGTTGCAAACACCCCATTGCACTTCGCCGCCACCACCCTCGTCGGAAAGCACTC ACCGCCTGCGATTAATACGACAAAAACCGCCTCCTTCTCCGTTACACAAGTAAGTTAATTAATAGTAAATCTAACTTCCA CTTCCATTCTCTTGGATCTCATTTTCCTCGAAAGTTTCATTCTCCGATCCGATTTTTGTGGCAATTGTAATCATTTTTCA TCGGTTTGTTTAATTCTAATCACTTACAATTGACTTGTTTTTCGATAAAGTGAATTTTTAGGTTCATGTTTCTTTCAATT TTCTTTCTCATGTGTGCCTTTTTTCAATGAATCTGCTTGGTTGATTTTGCAGGTTGGAGTGGGCTAAAAGGAACAAAGGT TTCAAAAGGGGTGGTTCCTCTCTTTCCCACTTCACACTTTTCCCTCTCTCAACTCTATTGAAATCTCCAACTTTTTGGGA TCTCTGTTCTTCATTCTTCTTCTTCTTCTTCTTCTTGTTCATATTCCCTTCTTGTTCAATTTTTGAACAACATCATCAAA AACATCATCATGGGATTGAAGGTTTTGCAATTGTCACAACCAGTTCTACCTCATTCTCCATCTTCATCACAAGCTCTAGC TTCTGCAATTTCATCTCCCTCTTCCAAATCACGAACCCGCAACAATGGAGGAGGTGGTGGAGCGGTGGATTCTCTAGTTT GCAGATTTGTCCAGCACCGCTCGAGTCTCCTCCGATCGACGCAGCAGCTTCTTCACCGGTCTAGATCGTTTGACCACTAC CCAGTTCCCACTCGCAGAGGGGGAACCATAACCAGAACCTGCAGCGCAAGCTTTGAGTCATCCTTCTCCTTCTCCGATGA GGAATTTGCCAAGAAGATCGAGAATTTAGCTCTCAGGTTCCAGCTCTCCGATGACACCGATGCAGCGAGTTCGAGTTCGA GTACAGAAACCTTCTCTTCGAACTCCTCCGGCGAGGAGCTACCTTCCTCTTCATCGGTGAACTTCGCGACGGAGTTTGAG CCGCCGTGGACCGCCGGAGAGGAGATAATACCGAAAATCATCGAGTGGAAAGCGAAGAGTGTGGAGCTTCCGTTTTCTCT CAGAATCATCAAGAAGAAGCTCCAGCTGAAAGATGGGTTCAGAGAGGCAGGGGAATCAGCATGCTGCTCTGTGAAGAAGG CTTTCTCTTCCATGGTGTTCATCATCAGAGAGCTTCACAGCTTCACCTTGCAGATGAGGGAGGTTCTGTTTTTCGTAGAC CTTCAAGGGATTCTGCAGAGAGTGCAGAACGAAATGCACGCGTCTTTCGTTTGGCTCTTCCAGCAAGTGTTCTCTCAGAC CCCAACTCTCATGGTGTATGTGATGATTCTCCTCGCCAATTTCACAGTTCACTCAATGGGAAACAGCGCCGCCCTCGCCG CCGTCGCACCGCAGGCTGAGGTAGCAGAGGTTCTGAGCCACGAGAATCAAACCCAGTATCGCAAATTCGACTCCTCTGCC ATCAAAACATTCTCTGTTACAAACGGGAATAAAACAACCTCCGTCGGCGGCGGCAATGGCGGCGGCGGGAAGGTCAGGCC GGCGGCTCATGGCACCGACGGGGACGGGAGGTTTGACCGGTCAGACTCCCGGCACGGAGCGGTTATCCCCGGAGGTGGCG GTGCTGGGACCTCACAGGCTTACAAAACAGGGGAAACAGAGTCGGTGTCAGAGGAAGAAGAGGTTCAGCTATGGAACTCC ATGGTGGAGGAAGCTTCATCGAGCATGGAGGTGGTGGATCTGGATCACGACACCATGAAACGGTTCGTTTCACCGTTTTC TGCAAAGATCGAATCCGATGATTATGCTGAGTATTTGAGAACAGAGCTCGTTTACCAAACGGGGTTGTCTCAGGAACCCA ACAATGCTCTTCTGCTTGCCAACTATGCTCAGTTTCTCTACGTTGTTGCTCACGATAATGACAGGTGCGTTTGAATGAAT ATGTTGACGTCTTCCACTTTCTTAAGATTCTCTGTTAATCTCATTTTAATTCCCAATTTTGGTAGCTTTCTGATTTCTTG AACTTCAATTAACAACTTGTGAGTTCTAACCCCTTTCGTCATATGTCATTAGTTTATGATTTTCAGATCATTTCTTACTC AATGCAACTAATTTAGTATATTACCAAAAAATTGTTTCCTATCTTCGAATTATCAAATTCGTCATTGACAGTGTTGGACG GGGAGTTCGTCTTTTGAAGATGGAAATAACTTTCACTTGTCCTGATTGTGTAAAACATCGGTCAGAAACTAATTATACTG AACAACAGTTACTAATTTGACCGATATTTTACACAATCTGGAATGGAATAGCAATCACAAGGGTTTTTTCAAAGTTGAGA CACGAATTTGTTTACGTCCAACAGTTTCAAATACCAACACTTTCAATTTGGCCGGAAGATATTTGGTGGGATCTCCTATA CAGGGAAAGAATATGCCAATTCAGCTGGCGAAGATGGTTATCGCCTTGGAAGATCTAACCAAAATGAGGAAAAAAACAAT ACCCTTTTTGTCGAATTGAACCTTGATAGTGGAGTCTGTGGTGTAGTTTGCCTGCACCACTGGTTCATGATGAGCAAGAT ACATCGTTCTCCGCACGTGACATCCGCGTGCGTTTATAAGAAAGATCTACACGTAATCGTGTTGACTTCAACTTTCTAGT GTCAAATTAAAATGAAAATGACATTAATTAATTTATACTAGTTATAAATGAAAAAAAGAGGTAGATCTTTTTACAAGTTG TAGAGAGTCGCAGTTTGCATCATGTGAAATGTGGTTGGTGTGGTAATTGGTGTTGACAAATTGGGTTGTTGTTCCAGGGC AGAGGAGTACTTCAAGAGAGCAATAGAGGTGGAGCCACCAGATGCAGAGGCGTATAGTAAATACGCAACGTTTCTTTGGA AAGTGAAGAACGATTTGTGGGGTGCAGAGGAGACATATTTGGAGGCCATTTCTGCTGAACCAAACAACACATACTACGCT GCAAACTATGCTCATTTTCTATGGAACACAGGTGGCGATGACACGTGTTTTCCTCTAGATCTATCTTCCCCAGGCCAAGA AGCTTGAGTAAATTTCACAAAAAATATATAGAGAATAAACCATAAGAACACATGGAACTACAACAAAAAAAAAATGGAAA TTTTTGTAGCTTATATCTTTTTTTATATATTCTAATTTTTTTAATCGGGGTGGGGGAGGAGGAGATGGAATAATCATGAA GATTGTATAATTTTTGTAATTATAACTGTACATAAACTCTTACAATGGCTCCGAGTTTAATAATATGGGCACATGTTAAT CTTTGATTCAGTGAAGAATAATGTTGGCTAAAAAGCATTTTTGGCCCCTGATGTTTTAAGTTTGTGCAAATTCTGCCCCT ATCTATTTTTGTAGATGTTTCTACCCCTCATGTTTTCAAACAGTGCACCGTCTACCCCTCACGGAGGGGTAGACGGTGCA CTATTTGAAAACATGAGGGGTAGACGCTGCACTGTTTGAAAACATGAGGGGTAGAAACGTCGACAAAAATAGAGTAGGGG CAGAATTTGCACAAACTTAAAACATCAGGGGCCAAAAGTGCTTTTTAGCCAATAATGTTTGGTACCCCATCTATTTTCAC CTTCACCTCTTTTAGATGTGTAAGTGATATGACATGTGGTGTGATAGAAAATGTAAAGAGAAATAGAAAAAAAAATGAGT GGATAAGAAATGGAAGAGAAAGTGAGGGGGTGAGTATATCATTACTCTCCGGTCAACGTGAATTAGTTATGTTGTTGTGA CCTTACCGAACGGTGAGTGTAATTTTCTTTAATGTTATTTCTCTGTTCTTATTTATTGATCATATTTTATGATTTTTTAA TAAATATAAGTTATTTTATAAATTTATCTTAATATTGCTTTTTTAGAATTTTAAAAATTAATTTAAATACAAGTGGTGAA TGTGCATTTTCTTAAGGGATTTCACCTAGGCTTTTGGCCCGGGTTTGATTCCCTCTGAGGTAAAAAAAAAAAAAACATTT GTGGTCAGAGACATCACTACTGTATCCCGAGCCAGTTAGTCACGTTAGACCCTTTTCCCCCGTAAAGACTGGTGACCAAA GGACAAAAAAAAAGGTAAAAGTAACTTATAAATAGAAAGAAGTAACATAAGTAATATTTAG
CDS sequence (LotjaGi6g1v0112400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGATTGAAGGTTTTGCAATTGTCACAACCAGTTCTACCTCATTCTCCATCTTCATCACAAGCTCTAGCTTCTGCAAT TTCATCTCCCTCTTCCAAATCACGAACCCGCAACAATGGAGGAGGTGGTGGAGCGGTGGATTCTCTAGTTTGCAGATTTG TCCAGCACCGCTCGAGTCTCCTCCGATCGACGCAGCAGCTTCTTCACCGGTCTAGATCGTTTGACCACTACCCAGTTCCC ACTCGCAGAGGGGGAACCATAACCAGAACCTGCAGCGCAAGCTTTGAGTCATCCTTCTCCTTCTCCGATGAGGAATTTGC CAAGAAGATCGAGAATTTAGCTCTCAGGTTCCAGCTCTCCGATGACACCGATGCAGCGAGTTCGAGTTCGAGTACAGAAA CCTTCTCTTCGAACTCCTCCGGCGAGGAGCTACCTTCCTCTTCATCGGTGAACTTCGCGACGGAGTTTGAGCCGCCGTGG ACCGCCGGAGAGGAGATAATACCGAAAATCATCGAGTGGAAAGCGAAGAGTGTGGAGCTTCCGTTTTCTCTCAGAATCAT CAAGAAGAAGCTCCAGCTGAAAGATGGGTTCAGAGAGGCAGGGGAATCAGCATGCTGCTCTGTGAAGAAGGCTTTCTCTT CCATGGTGTTCATCATCAGAGAGCTTCACAGCTTCACCTTGCAGATGAGGGAGGTTCTGTTTTTCGTAGACCTTCAAGGG ATTCTGCAGAGAGTGCAGAACGAAATGCACGCGTCTTTCGTTTGGCTCTTCCAGCAAGTGTTCTCTCAGACCCCAACTCT CATGGTGTATGTGATGATTCTCCTCGCCAATTTCACAGTTCACTCAATGGGAAACAGCGCCGCCCTCGCCGCCGTCGCAC CGCAGGCTGAGGTAGCAGAGGTTCTGAGCCACGAGAATCAAACCCAGTATCGCAAATTCGACTCCTCTGCCATCAAAACA TTCTCTGTTACAAACGGGAATAAAACAACCTCCGTCGGCGGCGGCAATGGCGGCGGCGGGAAGGTCAGGCCGGCGGCTCA TGGCACCGACGGGGACGGGAGGTTTGACCGGTCAGACTCCCGGCACGGAGCGGTTATCCCCGGAGGTGGCGGTGCTGGGA CCTCACAGGCTTACAAAACAGGGGAAACAGAGTCGGTGTCAGAGGAAGAAGAGGTTCAGCTATGGAACTCCATGGTGGAG GAAGCTTCATCGAGCATGGAGGTGGTGGATCTGGATCACGACACCATGAAACGGTTCGTTTCACCGTTTTCTGCAAAGAT CGAATCCGATGATTATGCTGAGTATTTGAGAACAGAGCTCGTTTACCAAACGGGGTTGTCTCAGGAACCCAACAATGCTC TTCTGCTTGCCAACTATGCTCAGTTTCTCTACGTTGTTGCTCACGATAATGACAGGGCAGAGGAGTACTTCAAGAGAGCA ATAGAGGTGGAGCCACCAGATGCAGAGGCGTATAGTAAATACGCAACGTTTCTTTGGAAAGTGAAGAACGATTTGTGGGG TGCAGAGGAGACATATTTGGAGGCCATTTCTGCTGAACCAAACAACACATACTACGCTGCAAACTATGCTCATTTTCTAT GGAACACAGGTGGCGATGACACGTGTTTTCCTCTAGATCTATCTTCCCCAGGCCAAGAAGCTTGA
Protein sequence (LotjaGi6g1v0112400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLKVLQLSQPVLPHSPSSSQALASAISSPSSKSRTRNNGGGGGAVDSLVCRFVQHRSSLLRSTQQLLHRSRSFDHYPVP TRRGGTITRTCSASFESSFSFSDEEFAKKIENLALRFQLSDDTDAASSSSSTETFSSNSSGEELPSSSSVNFATEFEPPW TAGEEIIPKIIEWKAKSVELPFSLRIIKKKLQLKDGFREAGESACCSVKKAFSSMVFIIRELHSFTLQMREVLFFVDLQG ILQRVQNEMHASFVWLFQQVFSQTPTLMVYVMILLANFTVHSMGNSAALAAVAPQAEVAEVLSHENQTQYRKFDSSAIKT FSVTNGNKTTSVGGGNGGGGKVRPAAHGTDGDGRFDRSDSRHGAVIPGGGGAGTSQAYKTGETESVSEEEEVQLWNSMVE EASSSMEVVDLDHDTMKRFVSPFSAKIESDDYAEYLRTELVYQTGLSQEPNNALLLANYAQFLYVVAHDNDRAEEYFKRA IEVEPPDAEAYSKYATFLWKVKNDLWGAEETYLEAISAEPNNTYYAANYAHFLWNTGGDDTCFPLDLSSPGQEA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 5 | 13 | 9 | - | – | |
| MobiDBLite | 13 | 41 | 29 | - | – | |
| MobiDBLite | 13 | 43 | 31 | - | – | |
| Phobius | 14 | 24 | 11 | - | – | |
| Phobius | 25 | 554 | 530 | - | – | |
| MobiDBLite | 127 | 150 | 24 | - | – | |
| PANTHER | 135 | 549 | 415 | 1.4E-183 | – | |
| PANTHER | 135 | 549 | 415 | 1.4E-183 | – | |
| MobiDBLite | 324 | 388 | 65 | - | – | |
| MobiDBLite | 347 | 361 | 15 | - | – | |
| Gene3D | 424 | 545 | 122 | 1.8E-13 | ||
| SMART | 433 | 465 | 33 | 180.0 | ||
| SUPERFAMILY | 441 | 541 | 101 | 5.22E-13 | ||
| ProSiteProfiles | 442 | 522 | 81 | 13.438 | ||
| SMART | 468 | 500 | 33 | 0.023 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi6g1v0112400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…