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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0127200 |
| Transcript ID | LotjaGi6g1v0127200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat (LRR) family protein; TAIR: AT2G30105.1 LRR/ubiquitin-like domain protein; Swiss-Prot: sp|P0C895|Y2010_ARATH LRR repeats and ubiquitin-like domain-containing protein At2g30105; TrEMBL-Plants: tr|I3SQL0|I3SQL0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0127200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:32896216..32904281) extracted from Lotus japonicus Gifu genome v1.2.
AACGAAATATTCCTTGCAAATTTTCCAACGAAACTATGCTGCGTATTTTTATCCGAGATAATGCCGTAAGTAAATTCGCA GGTAATATTTGATAGTAAATCTGCAAGAATTGTCGAAGCTAAATATCGTCTTTCGAACAAAACATATGAGAAAAGAGATT TTCCTAGAACATGGTCTTCCTCGAATGATCATACTAAGCTAAGCTTCATATCATAATTCACAGGAGACAGTAAAAATGGA ATCCGGTTCCGCCATTGATGGAGCAAGCGAGCCCAATTCGAATTCCACCATAACAATCAGCGTCAAGTTCAGTGGCGCCT CCATACCCATCTCAATCTCACCTCACTCAACCATCAAAGACCTCAAGTCCCTTCTTCTACCTGCCACCAATGTCCTCCCA CGAGGCCAGAAACTCATCTTCAAAGGTTTTTCACTCTTTTCTCTTTCACTTTTTGAGAAACCCCATTTTGTTCATTGATG TGTGAACTGTGAAGTGAATCATCTTTTACAGGAAAGGTTTTGGAAGACCCCATGACTTTGACAGCATCCAACTTGAGTAA TGGGTCCAAGCTCATGCTTATGGCTTCCCAGGGTTTATATCAAGGGGTATAGTACCATATTGATTTCCTTTCTTGTGGTG TCATTTTTTTTGCTGTGGGGATAATGGTCAATGAAGTTTACTTTTTTAAGGAAAAATTAGATGCAAAAATTAATTCAACT CTATTCTAGCATGATGGGTCATGAAGTATTGTTGTATGGTGTCATCATTTAGTTAAATTGTGGCTTTATGGTTATGGGGT AAACAAATGGAAAAACCTAATATGAATGCTTTATCAAGCTGGTTATGCGCACCCCAGATGGATCTTTTCATATGGAAAAT GACTGGGGCTAATTAGATGTGGTACAAAATGAGACAAGTGTGATAATCTTTATCAAACTTCTTATAGAAGAGAAAATCAT GTTTATGGATGTGATAGGTAGGGTACAGTTTGCTTTTGTTTCTATTGCCATAAAATATGCGGCTTGCAGATTTCGAATTT CTTGTACAGGATGGTCCAATCTTGAAGAAAGCTCAGGTTGCTCCCAAAGTGAGGAAAGATAGCAACTCAGGTTCTAGTAA TGACTTGAAGAAAATTCCTGTTAAGAACAGGTTGGACAGGTGGAAAGCGACAGGAGTCATAGCATTGTCTGAATGCAACT TAGAGGTAATAAACTGTTCATGGTTTTATCATATTTTCAACTAGAATTTCAAGTGGAAATTGAGAGATGAGAAACACATC AAGTTTTACTTAATGACTTGCTTTTGAAGATTTCTGCGTGTTGAGATCCTATTATACAAGCAAAATTATATGAATTGTTT TTCTTCGTGCCATCTATACATCTAGATTGTCTTCAGCAGCTCACATGTTAGGGGTTTTTAGGGTTCGCTTATTTCAGAAC ATAGGATGATTAAAGCTAGGCTATATTAGGGTATTAACTTCATTCACAAGACAATCCGTCACTACATCAAAATTTGTAGT TGTTTTTTTTTTTTGATTCAGTATAAGAAAGTTGTCCACAGATGAGAGGTTGTCATTCCAATGTTAAGACATGTTACAAG CCTCAGGCAGAGTTTACAGTGGTACTTACATATGGCCACCAATGATGATCACCAGCAACAATTGAACACAAGACCTTTGT ATCAATGGTGTTTGATCCTACCACTTTGGCAACTCTTCACTGGCTAATTCATAGTAGATTCATCAGTGAGGTCTAGTAAA TAGTAATTAACTTAATAGGAAGGCCCATGTCTGTATACTACGTCAGTATCAGTATCTTGGGACGTGGTAAAACCTTGTAT ATATCTTGAAAACTTTTATAAATCTGACAAAGTTTGGTCTAGGGGAAAAAGTTGAAAATCAGATAAAGTTTGGTTAAATT GAGATGTTTTTGTTTCCTCTTTAATCCCTCTAATTGCTCATTGAACATCAGTCACTATTGGCCTTGTGTAAAATTTCTTC TAGCCATCACTTTGTCTGCAAAATATCTCATTGTGCAGCCAAACATGATTTGATAGGCTATACTATAGGTCATAAATGAA AAAGGATTAACATGCCTCTCCTCCCTGAAGTCATAAAAAATCATCGATTTCATGCCCATATCTGAATGTGACTCTCTCTC TTAGATCAATATATCTAGAGTAGTGAGCTTAATGTGCTTTATTAGAAAATAGGCTTAATAGCTCTTTTGGTCCCTCACTT ATCACGATTTTGCACTTTTGGTTCGCAATAAAAAAAATTAGCACTTTTGGTCCTCCACATTGCTTAATTTTTTTGCAAAA ATGATCCCTATTTGGGACTAAAACGGAAAAAGTGTGTAAATGTGAGGGACTAATTTTGCTAATGTTTTTCTGGAGGGACC AAAAGTGCAAAATCATGATAAGTGAGGGACGAAAAGAGCTATTAAGCCTAGAAAATAATAAGAGTTCCATGTGTTGCTCT CCGTAGTCATTTTGAATTAGGCATAGAGCCAGAAAGCACCATAGAGCTTGCTGGAAACTAGATTTTTCAGGTCATACATG CATTAACTGTTTGGCATGTTCTACTTGAAGGGTAGCTGCAAGTACCATTTTTTGTGGTAGCCTTGAAAACAGTGAACACC ACATCTTGTGGCAGGCTTGACAAGAACATGAGGGTTATCATTATGAGTGAAAGGAAGTCTAGATGCTCATGTTCTAGGAT AAAAATAGATTTTTGAATTCATTATATATGATTACTGAAAGGACAATAATATTATGGACTAGTCTTTTGAGTTAACAATA GCCGATGTTGGTTACTCATGAGAGATTACTCCGTATCTTATTGAATCTAGAAAGGAAAAGGAGTAGTTAACAGCGTGCTA GAAATTTAATCTAAAGTAATTCCCATGTCTTCACCTAACAACTTAAACTTTTTGGATAGTTGGTTCATGACTTGGTACCA AAGTCTCTATGACCAAATGATCTAGAGTGCGGCTCTTGCCACCACCATTCTTTAAACAAAAAATTGAATTATAGCACAAG GTGGGTGGGTCCGAGCAATGTTCATGCTTGAGGCCCGAGGACACCCGAAGAATTCTTACGTGAGGAGCGTGTTAAATATA TAATAAGTCATTCATGTGTCTTCCAACAGCTTAAGCTCTGCGGATAGTTGGTTAAATGACAAAACCAATAAGTACAAAGG AAACCAAGGAAAATAAATTAAGTTTTCATTTTCATGAGATTTAATTGCTCTCATTCATGATATGAAATATCCTCTCACTT TCCTAGAAGTTTCAATTCAAATAGGCCATACCTGACGAAGTGTGGGTTTGTGGATCTTCTGCAAGACTTCTAGATTGCAA CAACAATTCAGTTAAAAATGTCCCTGCCGAAATTGCACATCTTACTGGTCTAGAGGTCAACAGAACTTCTCTCTGTTTTT TTCCCCAGCTACATGAGCAATATTTAACAGTTTTCTTACCTTCAAAATACTGCAGAAACTATTTATTAATGCCAATGACA TATTGGACAAATCAATTAGCTGGGAAGGGGTCACAACTCTCAAGCACCTAACAGTACTCTCATTGAATCAGAACCAGTGA GTATATATTGTCATTTACAATCTCGTTGTGTGCTTGTTTTGTTTTAACTTGCATAAAAACATTAAACAAATGTACATAAG GATTGCATATACTGTGGATTTTTGCTTGTCCACAGTACAGTCCATCCGAATTTGTAGTAGCTTGTAACCTGCTCCAAAGA TAGAGGATTATAAGGAAATATATTTATTGATTGTTAACGATTCCAGTATATTCCTTGTGAAATTTAATGTAAAAGGTTTG AGGTTTCTTGCATTGTGTCTTAGACTAATACCTCTTACATTAGGTAATTCAATTGAATATTACATGTGTTCATCTTGTTA TTCACAGAACATTTGTGAGATTGACTTCCATTTTTATTTCTAACCTTTCCTACTGGGGGACCTTTATGTCAATTCAAGTT GGTTGGGTATTTGGTACCTTCATATTATTTTCTTTTTTAAATGATTTCTGCAGTATAACTACTTTGCCACCTACATTGGG ATCTCTGAACTCTTTAAGGGAGCTGCATATCTCCAATAATAAATTGAGTGGCCTTCCTGATGAAATAGGACATCTGACAC AACTACAAGTTTTGAAAGCCAACAATAATAGGTATCAGCTAAAATTTTGTTCTTGTCTAAGTATCTGATATTTGCTTACT AACTCGTGCAATTGTAGGTTTGGTCAAATTTGTAAAGTTGGGCGATGCTTGACTTGTTTATTTGGTCCCATCTAATTGAT TTTATAGGTTTTTGGTTTTCATGTTTGGAATTGAAGAATGAATAAATATATATATTCTGATTTTGTGTTGTGTTTTGGGT GCATAAACATAAAAGAGCAACATAGTGATATAAAGCTCCTATTGTGGTGGGGGGGTCGAAGAAAAGGTCAGACTCATTGT GGTCTTTCATAGGCAGCCTTACCTTGCATTGTTAGAGGCTGATTTTGTGACTCAAACATGTGACCCGTAGTTACATGACA CTATTAGACACCCTCAGTTAGAGACAGCTAGTTAATTAGTGAGTGGGTTATTGAGTGAGGCATGTGGCCTATAAATAGAG ATTTTAGGGAGAGTATTGACATCTTTTGGATCATTTGGGGTTTGGGACTTATGGAGAGTGGCTGATTCTCTCCAATTACT CAGCAACCTTGTGTACTTCTACATTCAATATATCCAGTTCTTACCACACACCAACTCCAACCACTGCAACAAGTTTCCGT TTTTGGATGCATAAACATACACCCTTACTAAAAACTAACAGGTATCAGAATAAATATGAATAATTTATAGTTAAAAATGT CAATCCTCGTTCTTAGCCAAAAGAAAAAGTTGCAGAGCCTGGATTTTACTAGTGTCTATTCTTGAGGCAGTGGAAGAATC CCTGTCTAGAACGCCTGTGCCTGTGTGTTCATAAGTGGCCTTCATTCATCCCCAAGTTTTGAGTTTACTTATCTGATCGA ACCAATTCATGTACTTATGCAGTGAATTCTATTAACATTATTACTTAGTGATATTATTTTCAGTAAAACATTGTCATTTT GATTGATGTATTTCTTTTTCTCAGGATGAGTAAAATCACTGAATTTATAGGGAACTGCCATTCTCTTGTTGAGGTAGTAA TTGGTCTTCTTCCCCTTGTCTCATATTTTTCTTGCTTTTCCAGAAGGGAGTACCTAGTTGATATATCATCTGAAAATTAA CCATAAATGAAGTGATTATATTCTTTAATTGATCATGTAAGTGCTCTTAATATGCTTTAATAAGTTTTCTTGTTACACAG GTTGATTTCTCATCAAATTTACTGTCAGAATTGCCAGAGACATTCTTTAATTTCAGCTATTTGAAGGTACCTGTTTCCCC ATTTTTACCTAATAAAAAAAAAGGTGGATTTGTTTTCCCACCAACAATTGGTTTTAGATAATTTTGAAGTTTGGGAAATG TTACAAATGCTGCGGCAGTTTCTTTCTTGAACATAATTACTCAAGCTAACTGTATCACACATTAAATGAAGCTCTTAATT TCATGTTCTAAAAATTTTAACATACAAGGTAAGACAAAATCACATAAACCACTTTTGAGAAGTCTTGTTCAATAGATTTG AATCTAGATGACAGAAAAGAAGAAAATGAATGAACCTAATAAATCTAAGGTAGTCAGAAGCGGGATTTAGCAATAAAGCG TGGAGGGTCCAAAAGCGTAAAGCGCTAAAGCGCTAGCTAAAGCGTAGGCTTTAGCCGCTTTTGCCAGTTATATATATATT ATATATATTTACACCTATAAATATTTATATGCATATAAATGGTATAATTGGCATCAATATCATAATTCTGAGATGGTAAA ATAAGCTATAAGACACTATAAACTACAACTTATAGCTTATAGTTTAGAGCACAGAGGAATATTATAGCTATTTTACAAAG AGAGAACAGAGAGAGGTGTTTATTAACCCATTCGAACAGTGACAAAACCATTGCTCTTAGTAACCCATTTCACAAAGAGA GAACAGAGAGAGGTGTGCTTAAAGTTTCGAACAAAAGAACAGAGAGTCATAGTCGAAGGAAGAAATAGTAGAAGATTTGA CAAACAACAGAAGTTTCGAACAACAGAGAGAGACAGGGTCGAAGAGGAACAACCCTGCAAATTGAGTCGCCGGCGGCAGC GGCGGCTGCGCAGACGGCGAGAGAACAACACAGAATCGCGATAGAGGCAGAAGCTTCAAAATCGTGAGAGAGGGGCTCAA GATAGAAGAGGAACAATTGGAAAGTAGGTTTAAAATCCCTAATTTTAGCAAAACGGGTCAAAAAAACCCGGAAACATGTG AACCTGGCTGAAGCGCAGAAGCTTCAAAATCACGCTTCTGCCACGCTTTTGCGCTTTCTCCACGCTTCTGCTGATTCTCG CTTTAGTCGCGCTTTGAAGCGCAGAGCTACCTCAAGCGCGCTTTAGCACGCTTTAGCGCTTCAAAGCGCGCTTCTGACTA CACTGAATAAATCGAGTTAGAATAGCAACCACCTAGGTTTTTAATAAAAAATTATATGGGTAAAATCATGTACAGAGTTA ACGCCCACTATTTTCCCATTAGAAAGGAACTGCATGTCACTTTGGCATACCTGAGAGTAGTCATAACTATTACTGACTAA TAACTATATACAATATATCAATCTTCATTATATTGGTTCAGACTTTTCTTTCATTTTACTTCATGCATTTTTCTATTACT TCATTCAATCTGCCCTGTGTTTTCCTGCATTTTACTTCAGCTCTGACCACTCTGTAGGTTTTGCATCTTAGTAACAATGG CATGAAATCACTTCCGTCCAAACTATTCAAGACTTGCCTGCAGCTATCCACACTGGATCTGCATAATACAGAAATAACAA TTGATATCCTTCGCCAGGTGACGACATACTTATTTTTTATAAGCTTTTGTATTATACTTAGCGACAAAAATGATTTCTTT TGAACAGAAGGCTAATCCTAGTTATGTCAATTCATTAAATCATGTGGCGTTTAATGTCTAAAATACTGATCGCAAAACAT GTGGCTTTCTTGCAGTATGAAGGGTGGAACAACTTTGATGAGCGTCGCCGCTCAAAGCACCAGAAACAACTGGATTTTCG AGTTGGAGTTTCTAGAGATTTTGATGAAGGTGCTGATAAAAACTAAGATAAATGATTTCAGTCACAAGTAATGCAGCTCA GATAGCCTTCTTGAAGTACATGTCCGAACATGATCGAAGTTACTTGCCTCTGATCACCTGATCGGAGATTTGTGATAAAA TACTAAAATATAATATTGAAATTTCCTACAAGTGACTTCAATAAATACCCAGTTTCTTCTGGACGAAATGATGCTTGATA GTTGATACCTCTCATCTTATCTCTTTATTAACAGATTTGTTCCCCTAAAGAGGTTATGTTTTTTATTTATTTTATCCAAG TGAGTGCTAGCTAGGGATAGCCCAAATACAATGAGAAGTGGACTAGTCAAGAGAGACTAGAACCAACTAGAAAATAAGAT AAAATTTACATGAAACCAAATCATCAAAAGTAGCAGGAACAAATAAACATAAAAGAGATGCCATGGACCATCTAGAAGAA AATGAAAAAGTCACATAGCAGCTCCATAAAACCACCAAGTTCATGCTGTCAAATGTCTAACCAACATCACCCTTGCAGCA GGCCCATAACGCACCAGCAGAGAACAAAGCCAGAAAAAGAAAGCACCTTTAGTGTATCCCCTCGCAGAACCAGTACGGCA GCATATATTACCCAACTTGCAGCCCACCCAAAACGTCCCCAACCCGCAAATCATAAATCAGATTCCTTTTAGTGAGAGAA GACAGACACCTTTCATTCAAACCATGAATACGTAAATCCATCACACTTTGCTCTCAACCATTGCCATGCTTTTAATTGTG CTGCCTCCAGAACTTGGATCTGATCTAAATTGTTTCCATTAAAAATCTAGGGATAGTGGTTTACTG
CDS sequence (LotjaGi6g1v0127200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCCGGTTCCGCCATTGATGGAGCAAGCGAGCCCAATTCGAATTCCACCATAACAATCAGCGTCAAGTTCAGTGG CGCCTCCATACCCATCTCAATCTCACCTCACTCAACCATCAAAGACCTCAAGTCCCTTCTTCTACCTGCCACCAATGTCC TCCCACGAGGCCAGAAACTCATCTTCAAAGGAAAGGTTTTGGAAGACCCCATGACTTTGACAGCATCCAACTTGAGTAAT GGGTCCAAGCTCATGCTTATGGCTTCCCAGGGTTTATATCAAGGGGATGGTCCAATCTTGAAGAAAGCTCAGGTTGCTCC CAAAGTGAGGAAAGATAGCAACTCAGGTTCTAGTAATGACTTGAAGAAAATTCCTGTTAAGAACAGGTTGGACAGGTGGA AAGCGACAGGAGTCATAGCATTGTCTGAATGCAACTTAGAGGCCATACCTGACGAAGTGTGGGTTTGTGGATCTTCTGCA AGACTTCTAGATTGCAACAACAATTCAGTTAAAAATGTCCCTGCCGAAATTGCACATCTTACTGGTCTAGAGAAACTATT TATTAATGCCAATGACATATTGGACAAATCAATTAGCTGGGAAGGGGTCACAACTCTCAAGCACCTAACAGTACTCTCAT TGAATCAGAACCATATAACTACTTTGCCACCTACATTGGGATCTCTGAACTCTTTAAGGGAGCTGCATATCTCCAATAAT AAATTGAGTGGCCTTCCTGATGAAATAGGACATCTGACACAACTACAAGTTTTGAAAGCCAACAATAATAGGATGAGTAA AATCACTGAATTTATAGGGAACTGCCATTCTCTTGTTGAGGTTGATTTCTCATCAAATTTACTGTCAGAATTGCCAGAGA CATTCTTTAATTTCAGCTATTTGAAGGTTTTGCATCTTAGTAACAATGGCATGAAATCACTTCCGTCCAAACTATTCAAG ACTTGCCTGCAGCTATCCACACTGGATCTGCATAATACAGAAATAACAATTGATATCCTTCGCCAGTATGAAGGGTGGAA CAACTTTGATGAGCGTCGCCGCTCAAAGCACCAGAAACAACTGGATTTTCGAGTTGGAGTTTCTAGAGATTTTGATGAAG GTGCTGATAAAAACTAA
Protein sequence (LotjaGi6g1v0127200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESGSAIDGASEPNSNSTITISVKFSGASIPISISPHSTIKDLKSLLLPATNVLPRGQKLIFKGKVLEDPMTLTASNLSN GSKLMLMASQGLYQGDGPILKKAQVAPKVRKDSNSGSSNDLKKIPVKNRLDRWKATGVIALSECNLEAIPDEVWVCGSSA RLLDCNNNSVKNVPAEIAHLTGLEKLFINANDILDKSISWEGVTTLKHLTVLSLNQNHITTLPPTLGSLNSLRELHISNN KLSGLPDEIGHLTQLQVLKANNNRMSKITEFIGNCHSLVEVDFSSNLLSELPETFFNFSYLKVLHLSNNGMKSLPSKLFK TCLQLSTLDLHNTEITIDILRQYEGWNNFDERRRSKHQKQLDFRVGVSRDFDEGADKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 8 | 89 | 82 | 4.73E-19 | ||
| Gene3D | 13 | 92 | 80 | 4.4E-21 | – | |
| CDD | 19 | 89 | 71 | 6.68397E-15 | – | |
| SMART | 19 | 89 | 71 | 2.5E-13 | ||
| Pfam | 19 | 90 | 72 | 4.0E-15 | ||
| ProSiteProfiles | 19 | 90 | 72 | 16.342 | ||
| PANTHER | 35 | 378 | 344 | 2.8E-169 | – | |
| PANTHER | 35 | 378 | 344 | 2.8E-169 | – | |
| Gene3D | 108 | 362 | 255 | 4.6E-46 | ||
| SUPERFAMILY | 130 | 337 | 208 | 7.37E-39 | – | |
| SMART | 206 | 228 | 23 | 0.29 | ||
| SMART | 206 | 225 | 20 | 130.0 | – | |
| Pfam | 208 | 264 | 57 | 5.0E-9 | ||
| ProSiteProfiles | 208 | 230 | 23 | 7.342 | ||
| SMART | 229 | 251 | 23 | 0.76 | ||
| SMART | 229 | 248 | 20 | 1.3 | – | |
| ProSiteProfiles | 231 | 252 | 22 | 7.527 | ||
| SMART | 252 | 275 | 24 | 30.0 | ||
| SMART | 252 | 271 | 20 | 280.0 | – | |
| ProSiteProfiles | 254 | 275 | 22 | 5.725 | ||
| SMART | 275 | 294 | 20 | 290.0 | – | |
| SMART | 276 | 297 | 22 | 150.0 | ||
| ProSiteProfiles | 277 | 298 | 22 | 5.463 | ||
| SMART | 298 | 321 | 24 | 12.0 | ||
| SMART | 298 | 317 | 20 | 370.0 | – | |
| ProSiteProfiles | 300 | 321 | 22 | 6.849 | ||
| ProSiteProfiles | 324 | 344 | 21 | 4.816 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0127200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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