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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0131700 |
| Transcript ID | LotjaGi6g1v0131700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT3G53690.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9P3U4|HEL1_SCHPO E3 ubiquitin-protein ligase dbl4; TrEMBL-Plants: tr|A0A072V7L1|A0A072V7L1_MEDTR Zinc finger, C3HC4 type (RING finger) protein; Found in the gene: LotjaGi6g1v0131700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:37900015..37902472) extracted from Lotus japonicus Gifu genome v1.2.
CCGAAATGCTAGGCTTGACTCTGAAACGTTCCACCTAAAATTCAGTTATCCAAATAACCGTTCACACTCCACACACCACC AACGCCACTAATCTCCACTCTTTATCACAACCAGAATCACCAAAATCAAAACACAAATTGTCAATTTCTGACACCATCGG AAGCCGCCACTAATCTCTACCGCCACTAACCTCTACTTTAACCGAAGATAAAAAAAAATCATTGGCACTTCACCATGAAA ACTAGCTCCTACAACGATTACCTTCTCTTTGCCCTGATCACGCACTTGGACGTGAAAGCTGACAGAATTATTGACGTGCT GAATTCACAGATTCAGAGACTGCCTCACAATCCACGTGATCATCACAAGCACAAGCAAGTTTGCAGAGCAGAGAAGAAGA AGAGGTTGGTCAGTGGCAAATCCATTTGCGGCATATGCTTTGATATGAAAATGGAGCCTGAAATGTTCCGGGGAGGTGAT TGCAACCACCCGATTTGCAGTGAGTGCATATCCAAGCATGTTGTTGGTCAGATTCAGCGAAATGTTTTCAATGTGAATTG TCCAATTTCAAATTGCTGTGTGCAGTTGAAGCCGCAACAATTGAATTCCCTTTTGCCTAAAGGGGTTCTTGTTCGATGGA AATTTGCGATCTCCAAGTCTTCAATTGATTGCCCTGTTTTGGTGGAGAATGAAGATGAGGGGAAAGTTGTGAAAGAGGTT AAGCAAGAGAAAGATTCAGATATGAAGGTTTTGAAGTTGGTTAAATGCAAAATGCCCAAGAGATGTCCCAAATGCTCTGT TTATGTGCAAAAAAGTGGTGGATTTGGACACATGACTTGCAAGTTAGTGATATGATTCATTTTCAAAAATTTTGAGTTTC AATTGTGTATTTTGTTATCATGTCAATAATATATAATGAAAGTATGGAAATTAATTATGGTAGATCCTATTCCTTTTAAT TTACAGGTGTGGATGTCATTTCTGCTACAACTGTGGGGGAAGGTGGAAATTGGGACATCAATGCAACATATTCCAGAGGT AGCTTTCAAATAAAAATTAGCATATTTGTTCATACTACATACTACTCTTGTACGTAGGTTTTCCAAATGAGGCATGTAAA ATCAATGGGCTTATCAAAAGCTTTTGTGAGAATGGTGTTGTTGCATGTACTTTTCTTTGTTGTGTAATGAAGAAAAGTTT TTAAGATGCTTTGATATGGCAAAAGGCATTGATAGGGAGGGTGGTGCTAGGCACATATCTCAATTTTGGTTTATTCTAGA AAGAGGCAGTAGGAGACTCAAGAGTGAAGGGTGAGTTGGATGATCATGATATGCTTATTCAGAAGAAAGAATAGGTTCTC TATGATAATTGAAATGTCAATGTTATGACAATTAATAATAAGTATTGAAATAAACATTTTGTGATTCACAAAAATAGGAC ACCACAATCCTCCAAATTGAAAAGGGCATAAAATAGTAGGGAATGCTAATGTTTAAGTGCATAAAATAGTAGGGAATGCT AATAAAATAGGTTGAGACTGAGAGATAAAGGGAATAAGAATGGGAAGAGATCTAGGAAAATATGGTAGCTAGGAAGGTAG TTTGATCAGCCACACTAGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGGTAGTTTTGTTTCAATTTTT CTTTTTACCCCTACAAACTCAGATAAAATTATCACCATTGATGGAACTACTAGGAAAAGAGACATAATTAAAATATAACA GTGATAAAATGGGCTCGTCTTTGCTTAAAATTATTGTACTTGAGTATGTATTCGCCTTATGTGTTTGCTACATGCATGCT GAATTGTTGATTGGGCAGTTTGTTAATGACTGAAGTTTTTTTTTTAATGGATGACTGAAGTTTATATTAACTTTCAATTT CAATGTTCAATGTTTGTAACAGATGGCAAAACAAATGGAAACAGTTTGTACAGCAAATAAGCAGGAAGTTTTAGCTATTA AATCATGAGAGGAAAGAACATTTGGTAAACGGTAATAGTCCAGATAAAATGGAAATGATGTTGTAAACTGTGTTTTTTTT ATACAGTTTAGCGTTTTATATTCACCGAGTGCTCCTCAACATTTTTATGAGGATGTAAATAACACTTTTCAAGGGATAAA ATTTTTAATTTGTGCTTTGAAATAAATGTATTAATAAGCTATTAGAGACTCCCCAAGTATCATTAGTATTATTCGAGGTA TGTTGCTTCTGAGGACTTGGATTGTTTCCCTTCAGGGTGCTTTGTGAAGGAAATGTTGTTGCTGACTTTCTTACAAAGCT TGTCTTACGTTTCTGATTTGCCAGAGCTCTTATTTTTCGCCTTTTTTTTGTTGATTATTAATATGTTTTGACTCCTAGAG TTTTGTTATTTCTTTCCTTCTTGTACCAGAAGAAAAAGACTTCGGTTTATTATTAATT
CDS sequence (LotjaGi6g1v0131700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAACTAGCTCCTACAACGATTACCTTCTCTTTGCCCTGATCACGCACTTGGACGTGAAAGCTGACAGAATTATTGA CGTGCTGAATTCACAGATTCAGAGACTGCCTCACAATCCACGTGATCATCACAAGCACAAGCAAGTTTGCAGAGCAGAGA AGAAGAAGAGGTTGGTCAGTGGCAAATCCATTTGCGGCATATGCTTTGATATGAAAATGGAGCCTGAAATGTTCCGGGGA GGTGATTGCAACCACCCGATTTGCAGTGAGTGCATATCCAAGCATGTTGTTGGTCAGATTCAGCGAAATGTTTTCAATGT GAATTGTCCAATTTCAAATTGCTGTGTGCAGTTGAAGCCGCAACAATTGAATTCCCTTTTGCCTAAAGGGGTTCTTGTTC GATGGAAATTTGCGATCTCCAAGTCTTCAATTGATTGCCCTGTTTTGGTGGAGAATGAAGATGAGGGGAAAGTTGTGAAA GAGGTTAAGCAAGAGAAAGATTCAGATATGAAGGTTTTGAAGTTGGTTAAATGCAAAATGCCCAAGAGATGTCCCAAATG CTCTGTTTATGTGCAAAAAAGTGGTGGATTTGGACACATGACTTGCAAGTGTGGATGTCATTTCTGCTACAACTGTGGGG GAAGGTGGAAATTGGGACATCAATGCAACATATTCCAGAGATGGCAAAACAAATGGAAACAGTTTGTACAGCAAATAAGC AGGAAGTTTTAG
Protein sequence (LotjaGi6g1v0131700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKTSSYNDYLLFALITHLDVKADRIIDVLNSQIQRLPHNPRDHHKHKQVCRAEKKKRLVSGKSICGICFDMKMEPEMFRG GDCNHPICSECISKHVVGQIQRNVFNVNCPISNCCVQLKPQQLNSLLPKGVLVRWKFAISKSSIDCPVLVENEDEGKVVK EVKQEKDSDMKVLKLVKCKMPKRCPKCSVYVQKSGGFGHMTCKCGCHFCYNCGGRWKLGHQCNIFQRWQNKWKQFVQQIS RKF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 10 | 18 | 9 | - | – | |
| Phobius | 19 | 22 | 4 | - | – | |
| Phobius | 23 | 243 | 221 | - | – | |
| PANTHER | 39 | 146 | 108 | 5.2E-41 | ||
| PANTHER | 39 | 146 | 108 | 5.2E-41 | – | |
| Gene3D | 59 | 146 | 88 | 2.0E-15 | ||
| ProSiteProfiles | 61 | 231 | 171 | 14.822 | – | |
| SUPERFAMILY | 63 | 142 | 80 | 5.82E-13 | – | |
| ProSiteProfiles | 65 | 113 | 49 | 9.553 | ||
| ProSitePatterns | 83 | 92 | 10 | - | ||
| Gene3D | 155 | 242 | 88 | 1.7E-12 | – | |
| PANTHER | 160 | 226 | 67 | 5.2E-41 | ||
| PANTHER | 160 | 226 | 67 | 5.2E-41 | – | |
| SUPERFAMILY | 167 | 229 | 63 | 3.71E-13 | – | |
| Pfam | 179 | 222 | 44 | 2.1E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi6g1v0131700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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