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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0141300 |
| Transcript ID | LotjaGi6g1v0141300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal RNA small subunit methyltransferase b; TAIR: AT4G26600.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q922K7|NOP2_MOUSE Probable 28S rRNA (cytosine-C(5))-methyltransferase; TrEMBL-Plants: tr|I1N087|I1N087_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0141300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:40876812..40883685) extracted from Lotus japonicus Gifu genome v1.2.
ATATCCTTTTAAAAATAAGGACTAAATTACTAAACAAAAAAGTATATGGACAAAAATTACGAAACTATAAAACGACGTCG TGCATCTTCCTAGTAAACCCTGAACCCTAGCCGATTCTGAAAATTTTCCACATAAGAAGAAGAAACACAGACCCAACTCA CACACTCCACACGCCACAACCTCCACACTCTCCTCCTCCAATGGCTCCCGCCGCAATCAAGAAGAAAGCTACAAAACAGC AACGCAAATCTCCGATGAAGCCCAAAAAACCCAAGCACTTCACTCCCAAGGAAGATTCTCCCGCCGAATCCGAAGAAGAA GCTCCACAGCTACTCGAACTCGGAAGCGACGACGGCGGCGGCGACGACTCCGCTTCTGATTTCTCCGACGGGGATGATCC TTTGGTTGACGATTTCCTCCAAGGAAGTGATGATAATGAAGGTGCGATAACTCAACCAACTAACTAACTAACTAACTAAC TGTTTTGGAAGCATTCTAGCTTGGTTTTGCGATGGAGGTTTGATATTCATGGTGTTTTTCTGCAGGGAAAGCCTCGGCCT CGGCTTCGGGTTCGGAATCTGATTCTGATTCTGATTCGGATATTGAGGGGAGGTCGGGAAGGATTGATAAAGAAAGGAAG AGAGTAGAAGAGGATGCGATAGCTGAATTGCAGCTCAATATCAAAGATGAGTCTGACGAGTTCAGATTACCAACCAAGCA GGTTTCTTTCTTCTTTCTTCTATTTTAGTTTTTTTTTTTGTGTTGTTAGAATTTTCTGAAGTTGTTGGAAAAATTACTTT TTGCTCATGTTTTCAAATACCCTTTAAGAAATATTTATATTTTAAGCTATTTTCAATGTAAAATCAACTAAGCTATTCCA AACTTGAATTTTTATGGTGAATTTGGATTTTTTAGTTTTTGTACATTAGATGTTGAAAGGGGAGGTAACTGTTGCTTTTT AACTTTTAGGAACTTGAGGAGGAGACTCAACGCCCACCTGATCTTCCCAACCTTCAGAGGAGAATTAAAGAGAGTGAGTG TTTGTTTTGTTGTTAACTATCTTGTGAACAATATTCTGGTTGGCTTGTAAGTTGTTTTTTTAACTGTTTGTTTTTCCAGT TGTTCGCGTTCTTTCAAATTTTAAGGCCTTGAGGCAAGAGGATGCGACAAGGAAGGATTACATTGAGCAGCTCAAGACTG ATATATGTTCGTACTATGGCTACAATGAGTTTCTAATTGGCGCTCTAGTTGAGGTTGGAATAATTATGAAGTTATTATCA ACATATTGAACTCTAATTCCCCCTTTTGTTCTTTGTGTCCATTATTTACTTTTACCTGTGGTGGCAGGAATTGTAAAATG GAGCTGTGTTTCATTATAGTGTTTAATGAGGGTTCGCATGAAAATTGAATTTTTTGTTTTCTCAGATATTTCCAGTTGTT GAACTTATGGAGCTGATTGAAGCCTTTGAAAAGCCTCGCCCTACATGTCTGAGGACTAACACTTTAAAGGTTGCCTTTTT TTTCCTGTCATTTTGGGATGATATACTTACATGAACCTATCCATGTTCCCCACTGAGTTCATATATTTTATCTTCTGCGT ACAATCAGACACGTAGACGGGATTTAGCAGATGTTTTGATAAACAGAGGAGTAAATCTGGATCCTCTAAGCAAATGGTCA AAAGTAAGTGTTTGTGTCTTACATAGCTTTCTTTTATCATTTTCTTGGTTACAACAATCTAAGACTAAGAGGGAACCTGG ATAACTTCCCCCCCTACAGGTTGGACTTGTTGTGTATGATTCTCAAGTACCAATTGGTGCCACTCCAGAGTATATGGCTG GTTTCTACATGGTAGGTGATTTTTTACTATCGTGGTTTGTCATTCCATTTCATTTTAAGAACATGATACAATTAGTACTT TTTACTTTGCAGCTTCAAAGTGCAAGTTCATTTCTTCCTGTGATGGCCTTGAATCCTCAAGAGAAGGAACGTGTTGTTGA TATGGCGTAAGTAATTAAAAAATTTCAATGATTGAGAAAACTTCTATCCATTTCCAATGTGATTTGTGCCAACGTTATCA TTTTTCATGGTGCTCTGAGCTAATGGTGTTTAGTGTACCTATGGCAATTACAGTTCCTACCTAGAATTATACTTATACGA CAGTTTTTTGCTACATATTGTCAGACAAATAGAGCCTAAAAGAAAGAAATGTTTCATTCTAAATGTCTGTAGCTGTTAGT GTGCCTTGGTAAAGCATCTTTTTAATACCTGCCACTTGCTATTTTCTACCCATGCCACTTCTGACAGCTCGCTGACATTA ATGCCAATTGTCTCAGGCTTAACCTGATTGATTATGTTTGCTAGTTGCCAATTTTCTTTTCAAGCTTGCTATTGTATAGT ATCACTTATTGATTGAAGACCTGCTGCATGAATGGAATGTTATACATATTTAGATTTACCTTGCTATGTACACTTTGCTT TTGTAAAAAGATCAAAATTTATTTAAAATTTGGCTCAAACTCAATTTGTGGCAACTATGTTAAGGAATAATGTTCAGGGT TCATTATGAGTCAAAACTAAAACTCACAACTATAGGACTCACAACTTTAGTTTCTTTTAACCTTTTGTATCAATTTTGTC TCCAATTAGACTGTCCTTCCTCTTATAACTCGTTCTTTAGTATAACTGTTGTTATTGCCTTGTGAGAACTCTTTGAGTTT TCTCAAAATACATGAGACTCAGACGATGTTGTTATCTTAACATGAACACTTTTAGATTTGAACTGCAATGCCAAACTGCT TTTCTTGAAATGTTTCTTCAATGATGCTGAAGGCACTTCATGCTTGTTGCAGGGCTGCGCCTGGTGGTAAAACAACATAT ATTGCCGCTCTGATGAAGAACACTGGTAAATATTATGTTCTAACTTTTCTGTACATTTCAAACTGTGTATCCCGTTTTTG GCACAAAACAGTATATACTCTTTTCGTAGCACTGCTTCATTTATCTGATGTATGTAACAGTTACTGTATAGGGATCTTAT AGTTAATTATTATGTTATTTATTCTAGATATTATCAAGTATACTCTGTAAGAATGCTTTGTTCTGTATGCTTTCTAGTTT TTTGTTTGTGAACTTGTTCTTCCAGTAATCCAGTCATAATTTATTTTTATGGCAGGTATAATTTTTGCAAATGAGATGAA GGTACCACGGCTCAAGTCACTGACTGCAAATTTGCATCGTATGGGTGTATCAAACACTGTAGTATGTAACTATGATGGAA AGGAGGTTAGCATCTTTTGACTGCACGAATTCTTGTCTACTAGATTCCTTCAAAAACCTTAAATGTCTTCAATGGTATTA GATTGTAATATCATTCGATATTGTTTTATATGTGACCATGTCTTGCTTCTCTGTTGTCCAGCATTATTTGTTTGGTTGGA CAAAGTATTTGGTGAATTGGTGGTTCTTATTTACTTATAGAAAAGCAATATTGCTCCCCTATAACTAAGAGAAACATCAA AAATGTAATCTACTAAAGACAATTAGAGATTAGATTTTTACAAGAAAGAATGCTACTGAAAGAAATTGGCGCTGTATCTA GACTCTAGAGTATATAATGTCTACAATTATATTAATATTGCAATTTTGACACTGTGCAAAATGTTGGTTGTTATAAGATG CCTGGGCGAATCTTTGATTACAGGAGTTGCAATTGATTTTGCCTATTTCATATTATTTTTGTTATTAACATTATGACGAT GATGTCAAATTGGCAACAACAGTGATATGATGACGTTTCATTTTAAGCTATCCTTAGTCTAGGTATACTATAGCATTTTT ATTCTAATCCAGAGATTCACATGTTACTGCCATTTGTAGGTCTTCTAATGACACTGCATGACCATAAATGCTAACATCTG TTTAATATTTATATTCTTCTATTTCAGCTTCCGAAGGTTTTGGGTCTCAATACCGTTGATAGGGTATTATTGGATGCTCC TTGCAGTGGAACTGGGGTAAGAAGTAGTAAACTATATGTGTGTGTGTACATTAACTTTGAAGAACCTAAAAATTAACTAA ATAATTTTGTCTGCAGGTTATATCCAAAGATGAGTCCGTTAAAACCTCTAAACATTTGGAAGATATACAGAAATGTGCCC AACTACAGAAGGTAAATTAATATTTGTTGAGGGTTTTGTTTGGGAGAGATGAGAGGAGTGAAGTTGGGACTGAGAGGAAT AAATATGTATCTTGTTTTCTGCATTGCACATTTTCATTCCTTTAGCCGCTTTTATGTTTCTTTCACCAAAGCATCTTTGT TTTCTATATTTTAAGAACTAAATGCATGTTTGATTTTGAGGGAGAATTGTTTTGGCAAAGGCAAGTAGTTGTATCTGTTG TCAAAAGTCAAAACCCTGGTTTTGAAAAGAGTGTCCAACACAACCAAACTCTGTAGATGCTGTTTCACATTTTTTGAAGA TTGATGTTCGCATTCTGTTATTTAGTCTTTTTCATGTTGAAGAGAAAGAGTCAAAAGCGGTTCTGAAGTGAGACTAATTA TGAAATTTTACATCCCCCTATTCATTGAAAATTAAAATCACATAAAATAGAACTTTATATACTCTGCCACAGAATAAATG TATAATTTTTTTACTGTTTCTTTCCTAGTAAAATTTCTTTTCCTGGTCAGTAAAATCATCTTATAACAAAATCTTCTAAT TTGCGCTCTTCTCCGTTTTTACTATTCTTTAATATTTCTTTCCTTGTCTGTAGGAGCTCATTCTTGCTGCAATTGACATG GTGGATGCTAATTCAAAATCTGGGGGGTACCTTGTATATTCCACATGCTCAATTATGGTTGCTGAGGTTTGTTTATTATT TGCCACTTGCATCCATTGGGTTTGATATGCCTGCATTTTTATGTCCTATGTTTCTAATTTTCCCCATTAAAACTTCTTCA GAATGAAGCAGTTATTGATTATGCCCTTAAAAGGAGGGATGTTAAGCTGGTTGCTTGTGGACTTGACTTTGGACGTCCAG GGTAATGATCGAATCCATTTTCTCCCCCTCACAACACTGATTTTGATTATTATGAATTGTCTGTGTTGTGACATTTGCTT TCTGTCAGGTTTACAAAGTTTAGGGGGCAACGCTTTCATCCGTCCTTAGATAAGACGAGACGTTTCTATCCTCATGTACA CAATATGGATGGTTTTTTTGTTGCGAAGGTATATATGCTCATTTATGGTTTAAAACTTTCTCTACATGTTCTCATTATGT CCTATTCCCCTATAAAATTGGCTATCTTGGAAGGTAGCTTTGAATTTTATCCAGTAATGCGTTTAGGATGACTAGCAACG ACAAGCAACAAATTTGTAGATTGACAAAATTCTTGGTAGTACAAGATAGACGAACGTTGGGGAATCTGCTGTTAGGTTGT TAACTGTTTGTAGTGTTAGGCATGGATAAGATGTTGACATTGTGCAGTCTCATATGAATATTGGTTTGGTTTGATAGATG TAATTTTGATTGAAGGAAATGCTAAGGTTGTTGGACTGCTAAATGTTCTGCTTATTGATTTGAACTTTTTCAAAATACCT TTGGAGTTTGAACTAATATTCTACTTATTAGTTTTGCCTTCCATTATCTTTGGTGAAACCCCTTGGTATTTACAATATGT AGTGCGAAAGCAAAATATAGCTCCTCTTGTTGGATAGTGGGATCATTTGATTTTTGCCTTTGGATAGTTATCTCATGGGC GTAAAATTAACTTTTGGTGTTTATATTCTCTAAATTGATGTCTTGCAGTTGAAAAAATTGAGCAACTCAAAGCAAGGTGC AAAACCATCAGAAACATCTGAAAATGTCGAAATAGATACAGAGGTTGTGGAGGAAGAGGACAAACCAAGTAATGGCGTAA AAGAAAATGGCAAACAAACTTCTGAATCTGAATTGAAAACGAAGGAAAAAAGGAAATTCCCATCAAAACCAAGTAATGGT ATTAAAGCAAATGGCAAAGTGTCTTCCGAACCAGAATCCAAAAGAAGGAAGAAAAGGCTATTTCCATCTAAAGAGGAGAT TTCAAATGCCAGGTGAAATGTTTTCTCCTTGTTTTACATTAGCCTTTGGGCCAATGCTTCATAGAACGTATCTTTATACT GTATTCAACAAATCCACAGCAGTTAATGGATTTTGTGATTAATGCAGGGAGCAGAAGAGGAGTGCTTTAAGAGAAAACAA GGAAAAGGGTGGTAAGCAACAGAGGTCAAAAAGGCAGTGATAATGCATGGAGCAGTGATAACCAACTGCAGTTTTAGAAC TGATTCTCACCCCAACAACATGGGAGTGTCTAGGGTGATTTCTTGTCATATTAGTGTACCCTGTAACCAATGGCATGCCC TAATTGTGGGGCCCAGTTTTGTTTTATTTCTTAAGTTATTTAGCTATGTTTTAAGCAAAGCTGTAAATCAGATATCCCCC CTCTTTTGGTATTTGAAATTAATTTTTAATTATTGTCCTGATGATGCTTATTGCCCTGCGTATTTGTTACCTATGGAAGA ATTATAGTTGCTTCAAATGATATTATAGTATTGATAAATGATTTCAAAGGTGATTGTTAACCGTTGTGATTTATTTTCCT CTTGAAGCATATATATTTGGTGTTTTCTTGCATTTCATTGTGTTGTGCCTCTCTGAAGTCTTTAGAGGTGCTTGAAAAGC TTAGATATTTTTAGGATATAGAAGATAGTATATCTTGTTTGTAGTGTTGAGTTCTCGGCAAAGGGGGGAAACTGCTTAAA ACATCACATATTGCACGTATGACAAGGAGAAACCTTCATAACTGAGTTTCTTTGTAATATCAGAAATTAATGGT
CDS sequence (LotjaGi6g1v0141300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCCGCCGCAATCAAGAAGAAAGCTACAAAACAGCAACGCAAATCTCCGATGAAGCCCAAAAAACCCAAGCACTT CACTCCCAAGGAAGATTCTCCCGCCGAATCCGAAGAAGAAGCTCCACAGCTACTCGAACTCGGAAGCGACGACGGCGGCG GCGACGACTCCGCTTCTGATTTCTCCGACGGGGATGATCCTTTGGTTGACGATTTCCTCCAAGGAAGTGATGATAATGAA GGGAAAGCCTCGGCCTCGGCTTCGGGTTCGGAATCTGATTCTGATTCTGATTCGGATATTGAGGGGAGGTCGGGAAGGAT TGATAAAGAAAGGAAGAGAGTAGAAGAGGATGCGATAGCTGAATTGCAGCTCAATATCAAAGATGAGTCTGACGAGTTCA GATTACCAACCAAGCAGGAACTTGAGGAGGAGACTCAACGCCCACCTGATCTTCCCAACCTTCAGAGGAGAATTAAAGAG ATTGTTCGCGTTCTTTCAAATTTTAAGGCCTTGAGGCAAGAGGATGCGACAAGGAAGGATTACATTGAGCAGCTCAAGAC TGATATATGTTCGTACTATGGCTACAATGAGTTTCTAATTGGCGCTCTAGTTGAGATATTTCCAGTTGTTGAACTTATGG AGCTGATTGAAGCCTTTGAAAAGCCTCGCCCTACATGTCTGAGGACTAACACTTTAAAGACACGTAGACGGGATTTAGCA GATGTTTTGATAAACAGAGGAGTAAATCTGGATCCTCTAAGCAAATGGTCAAAAGTTGGACTTGTTGTGTATGATTCTCA AGTACCAATTGGTGCCACTCCAGAGTATATGGCTGGTTTCTACATGCTTCAAAGTGCAAGTTCATTTCTTCCTGTGATGG CCTTGAATCCTCAAGAGAAGGAACGTGTTGTTGATATGGCGGCTGCGCCTGGTGGTAAAACAACATATATTGCCGCTCTG ATGAAGAACACTGGTATAATTTTTGCAAATGAGATGAAGGTACCACGGCTCAAGTCACTGACTGCAAATTTGCATCGTAT GGGTGTATCAAACACTGTAGTATGTAACTATGATGGAAAGGAGCTTCCGAAGGTTTTGGGTCTCAATACCGTTGATAGGG TATTATTGGATGCTCCTTGCAGTGGAACTGGGGTTATATCCAAAGATGAGTCCGTTAAAACCTCTAAACATTTGGAAGAT ATACAGAAATGTGCCCAACTACAGAAGGAGCTCATTCTTGCTGCAATTGACATGGTGGATGCTAATTCAAAATCTGGGGG GTACCTTGTATATTCCACATGCTCAATTATGGTTGCTGAGAATGAAGCAGTTATTGATTATGCCCTTAAAAGGAGGGATG TTAAGCTGGTTGCTTGTGGACTTGACTTTGGACGTCCAGGGTTTACAAAGTTTAGGGGGCAACGCTTTCATCCGTCCTTA GATAAGACGAGACGTTTCTATCCTCATGTACACAATATGGATGGTTTTTTTGTTGCGAAGTTGAAAAAATTGAGCAACTC AAAGCAAGGTGCAAAACCATCAGAAACATCTGAAAATGTCGAAATAGATACAGAGGTTGTGGAGGAAGAGGACAAACCAA GTAATGGCGTAAAAGAAAATGGCAAACAAACTTCTGAATCTGAATTGAAAACGAAGGAAAAAAGGAAATTCCCATCAAAA CCAAGTAATGGTATTAAAGCAAATGGCAAAGTGTCTTCCGAACCAGAATCCAAAAGAAGGAAGAAAAGGCTATTTCCATC TAAAGAGGAGATTTCAAATGCCAGGGAGCAGAAGAGGAGTGCTTTAAGAGAAAACAAGGAAAAGGGTGGTAAGCAACAGA GGTCAAAAAGGCAGTGA
Protein sequence (LotjaGi6g1v0141300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPAAIKKKATKQQRKSPMKPKKPKHFTPKEDSPAESEEEAPQLLELGSDDGGGDDSASDFSDGDDPLVDDFLQGSDDNE GKASASASGSESDSDSDSDIEGRSGRIDKERKRVEEDAIAELQLNIKDESDEFRLPTKQELEEETQRPPDLPNLQRRIKE IVRVLSNFKALRQEDATRKDYIEQLKTDICSYYGYNEFLIGALVEIFPVVELMELIEAFEKPRPTCLRTNTLKTRRRDLA DVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALNPQEKERVVDMAAAPGGKTTYIAAL MKNTGIIFANEMKVPRLKSLTANLHRMGVSNTVVCNYDGKELPKVLGLNTVDRVLLDAPCSGTGVISKDESVKTSKHLED IQKCAQLQKELILAAIDMVDANSKSGGYLVYSTCSIMVAENEAVIDYALKRRDVKLVACGLDFGRPGFTKFRGQRFHPSL DKTRRFYPHVHNMDGFFVAKLKKLSNSKQGAKPSETSENVEIDTEVVEEEDKPSNGVKENGKQTSESELKTKEKRKFPSK PSNGIKANGKVSSEPESKRRKKRLFPSKEEISNAREQKRSALRENKEKGGKQQRSKRQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 112 | 112 | - | – | |
| PANTHER | 6 | 584 | 579 | 2.1E-265 | – | |
| PANTHER | 6 | 584 | 579 | 2.1E-265 | – | |
| MobiDBLite | 9 | 23 | 15 | - | – | |
| MobiDBLite | 56 | 73 | 18 | - | – | |
| MobiDBLite | 79 | 93 | 15 | - | – | |
| MobiDBLite | 96 | 112 | 17 | - | – | |
| Coils | 112 | 132 | 21 | - | – | |
| PRINTS | 178 | 198 | 21 | 8.6E-18 | ||
| Gene3D | 181 | 288 | 108 | 9.7E-35 | – | |
| SUPERFAMILY | 188 | 503 | 316 | 2.88E-68 | ||
| PRINTS | 211 | 223 | 13 | 8.6E-18 | ||
| Pfam | 211 | 288 | 78 | 8.7E-9 | ||
| ProSiteProfiles | 215 | 504 | 290 | 72.222 | ||
| TIGRFAM | 227 | 503 | 277 | 2.1E-102 | ||
| PRINTS | 234 | 247 | 14 | 8.6E-18 | ||
| PRINTS | 275 | 289 | 15 | 6.3E-28 | ||
| Gene3D | 292 | 609 | 318 | 1.7E-77 | – | |
| Pfam | 292 | 502 | 211 | 1.0E-72 | ||
| PRINTS | 304 | 314 | 11 | 6.3E-28 | ||
| ProSitePatterns | 371 | 382 | 12 | - | ||
| PRINTS | 372 | 384 | 13 | 6.3E-28 | ||
| PRINTS | 426 | 442 | 17 | 6.3E-28 | ||
| PRINTS | 486 | 503 | 18 | 6.3E-28 | ||
| MobiDBLite | 507 | 618 | 112 | - | – | |
| MobiDBLite | 529 | 560 | 32 | - | – | |
| MobiDBLite | 572 | 611 | 40 | - | – | |
| Coils | 588 | 608 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. | ||
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. | ||
| Molecular function | S-adenosylmethionine-dependent methyltransferase activity | Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate. |
Expression pattern of LotjaGi6g1v0141300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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