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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0153700 |
| Transcript ID | LotjaGi6g1v0153700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine--tRNA ligase; TAIR: AT1G09620.1 ATP binding/leucine-tRNA ligases/aminoacyl-tRNA ligase; Swiss-Prot: sp|F4I116|SYLC_ARATH Leucine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1J9U5|I1J9U5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0153700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:43183331..43187903) extracted from Lotus japonicus Gifu genome v1.2.
GATCCGACCCGAAAGAAGAATGCAAAACCCTTGTTTCATCGCTTCAAACAAAACCTTGTCTGTGTTCGTTTCCTTCATGC AATTCATGTGTCTTTACCACTAAACAATTGGTTTCGTGCGTTCCTGTTTTTCGTGTGCAGTTGCTGTCGGTTTTTCGCAG ACATGGCGGCGAGTGACGGTGGTGGCAAGAGCACCGCCCGTCGGGATCATCTCCGGGAGATTGAGGTCAAGGTTCAAAAA TGGTGGGAAGACAGCAACGTATTCGCGGCGGAGCCCGGCGACGCGCCGCCGAAGCCCGGCGAGAAATTCTTCGGGACTTT CCCTTTCCCTTACATGAACGGTTACCTCCATCTGGGTCACGCGTTTTCCCTCTCCAAGCTTGAGTTCGCCGCCGCTTTCC ACCGCCTCAAGGGTGCCAATGTGCTCCTCCCCTTCGCCTTCCACTGCACCGGCATGCCCATCAAGGCCTCCGCCGATAAA CTCGCCAGAGAGATCCAGCGTTTCGGTGACCCACCGGTTTTCCCTCTAGAAGAAGAAGAAGAACCAGAAGAGGCTCCTCC TGATGATGATGCAAATGCAGGTGGGAAAGTCAGTTTCAAAGGGAAGAAGTCCAAGGCTGCTGCTAAAACAGGCACACAGG TTTACCAATGGGAGATTATGAGGAGTGTTGGGATTTCTGATGATGAGATTTCAAAGTTTCAGGACCCTTACAAATGGCTT TCTTATTTTCCACCTTTGGCTGTGGAGGATCTCAAGGCTTTTGGGTTGGGTTGTGATTGGAGAAGGTCCTTTATCACCAC TGATATGAACCCATATTTTGATTCTTTTGTTAGATGGCAGGTGAGGAAGTTGAAGTCCATGGGGAAGATTGTGAAGGATG TGAGGTATACTATTTTTTCTCCTTTGGATGGACAACCCTGTGCTGATCATGATAGAGCAAGTGGTGAAGGGGTTCAGCCC CAAGAGTACACTATTATCAAGATGGAGGTGGTTCCACCTTTCCCTCCAAAGTTTGAGGTGCTTGAGGGAAAGAAGGTGTT CCTTGCTGCTGCAACTTTGAGGCCTGAGACTATGTATGGGCAAACAAATGCTTGGGTTTTGCCTGATGGGAAATATGGGG CTTTTGAAATCAATGAGACTGAGGTTTTTGTTATGTCACACAGAGCAGCACTTAACCTTGCCTACCAGAATCACTCACGG GTCCCTGAGAAACCCACTTGCTTGCTTGAGCTCACTGGCTATGACTTGATTGGCCTGCCACTAAAATCGCCTCTTTCTGT TAATGACACTATATATGCACTCCCTATGTTGTCTATTTTGATGGATAAAGGTACTGGGGCGGTGACCAGTGTTCCTAGTG ATGCACCTGATGATTACATGGCCTTGCTTGATTTGAAGTCAAAGCCAGCATTCAGGGCCAAGTATGGTGTTAAGGATGAA TGGGTGATGCCATTTGAGATTGTGCCCATCATTGAAGTTCCAGAGTTTGGAAATAAGTGTGCCGAGACAGTTTGCTTGCA GATGAAAATCAAGAGTCAGAATGAGAAAGAGAAGCTTGCTGAAGCCAAAAAGCAAACTTACTTGAAAGGATTCACTGAAG GAACGATGATTGTTGGAGAGTTTACTGGGAGGAAAGTTCAGGAAGCTAAACCCTTGATTAGGAGCATGCTTTTGGATTCA GGTCAGCATTCATCACCACATTGTTTTTAAATATGTATTATCTTATTATTATTCTCATAATTTTTTTACAATTTACTCCT ACTTAATTTAATTATCTCTGGTAATTCAAAATAGTACAGCAACATGCCAACATATGATTATTATATAACAATATGAAATA ATTTTGCGGCAATAATAAACCAAAGTTTGTTATATTTTTCTTTAGGTAAATATAAATTCTTAAATTGTTTTGTTTTACAT GTATGCCTGTATCTTGCCCTAGTAACTGAATATTTGGTTCTACACTTTCAGGTCATGCTATTGTGTACAGTGAGCCAGAG AAGCGGGTGATTTCAAGATCTGGTGATGAATGTGTTGTAGCTTTGACAGATCAGTGGTACATTACATATGGGGAATCAGA ATGGAAGAAGTTAGCTGAGGAATGCTTGTCTAGCATGAGCTTGTTTTCTGATGAGACAAGACATGGATTTGAGCATACTT TAAGCTGGTTGAACCAGTGGGCTTGCTCACGATCATTTGGTCTTGGGACACGCATACCATGGGATGATCAGTTCTTAGTT GAGTCTTTATCGGATTCCACCATTTACATGGCTTATTACACTGTTGTGCATTATTTGCAGAATGGTGACATGTATGGATC TAGTGAATCTGTTATCAAACCTCAACAGTTGACTGATGATGTCTGGGATTATATTTTCTGTGATGGACCTTTCCCTAAGT CCACTGATATTTCATCATCTCTTTTGGGCAGAATGAAGAAGGAATTTGAGTATTGGTATCCACTCGATCTTCGAGTTTCT GGTAAGGATCTCATCCAGAATCATCTTACCTTCTGCATTTACAACCACACTGCAATTATGTCCAAGCACCACTGGCCACG TGGGTTTAGATGCAATGGGCACATAATGCTCAATAAAGCGAAAATGTCCAAGTCCAGTGGAAATTTCAGAACTATTCGTC AGGCAATTGAGGAGTTCTCTGCGGATGCTACTCGATTCTCTTTGGCTTATGCTGGTGATGGCGTTGATGATGCAAATTTT GACTTTATGACAGTAGATACTGCAATTAAACGGCTCACTAAGGAAATTGCATGGTATGAAGAGATCCTGGCAGCAGAATC TTCTATGAGAACTGGTCCTCCATCTACTTTTGCTGATTGTGTGTTTGCCAATGAGATTAACATTGCTGTCAAAACAACTG AGCAAAATTACTCAAACTACATGTTTCGAGAAGCACTCATAAGTGGCTTTTTCAATCTTCAGACTGCTAGGGATGAGTAT AGATTATCATGTGGGGTTGGAGGTTACAATCGTGAGTTGCTGTGGCGGTTTATGGATGTGCAGACACGTCTTCTAGCACC TATCTGCCCACATTATGCTGAGTTTATTTGGAGAGAGCTTTTGAAGAAGGATGGTTTTGTGGTGAAAGCAGGCTGGCCAA CAGCTGAGGCTCCTGATCTTACACTGAAGAGTGCCAATACATATCTGCAGGGGTCTATTGTTCTTATGAGGAAGTTGCTT CAGAAGCAACTTTCAGGTTCAAAGAAAACAAATAAGAAAGGTGCTCCTGTTGCATCACTGACAGAAAACAAGGTAACAGG CTTGGTATATGTAAAGGAACAATTTGATGGTTGGAAAGCCGAGTGCCTGAACATTCTCCAGAACAAGTTTAACAGAGATA CCCGAACTTTTGCTCCAGAATCAGAGATATTGGAGGCTTTGCAACATAGTTCTGTTGGTCAATCTTCTAATTCAGAACAA ATTCAAAAGCAATGTAGACCTTTCTTGAAGTTTATGAAGGATGAAGCCATTAAACTTGGGGCTCAAGCGCTGGATTTGAG ATTGCCATTCGGTGAAATGGAGGTTCTTAGGGAAAACTTAGACTTAATCAAGAGACAGATAGCTCTAGAACATGTGGAAA TTTTATCTGTAGCTGATGCCGGTTCTGTGGCTAAAGCTGGATCTCTTGCTTCTCTGCTTAATCAAAATCCTCCATCCCCA GGAAATCCAACTGCCATCTTTTTAATTCAGTAGCTACTCGGGTGAGTTTCTTAAAGTTTCTCCTTTCTTAAAATAGGATT TGTCTTTTTTCAATATTTCTGTACATGTCGGATGGTTGTTGTCTCCTCTCTTGCTACAAGGTTTCACTGTAATAATTTTC AAATTTTTTTATGATTTCCATTTTGTTCTACATATAGCTGATTCAGGCTCTCTTTGTTATTGATAATGTCTGCAGAATTA TGACTCTTTTGATAGATCTGGCGGTTATAAAAATGTTGGGATGGACAACACAAGATTCTGGATACTATGGCATAGAGCTT TCTGAGTCCACCCCTGTCTTTGTATTGCTGTTGATGGAGTGTCTGATGAATCTTCTTCTTCTAGGCTGAAGGCTCATATT TAGCAGAAGATTGATTAGTTTTAATTTTGTTATTTTGATTATTATTTAGTGGCTATAGCGGACCTCACTTAGTTTTAATT TTAATTTAAGGTGGTCCAATACTACTTTTACACATCGCATGAGCTGAAGTTATCCCCAAGTATTTACATATGCTTTTATG AATCTTGTGACATATTAACAACCTCATTGATTAGACGTAAATTTTGACAAAGAATTTTCTGCTTTATAGTTTATACGTTC TTCAGAAAAAAATTGAGTTCTGTTGATTTGAGTTAGTAAAATGAAGAATATATAGGATTTGATTAGTATGAGGTTGAATT TCTTAAATATGTCTGAGATTCATAATTTCTGAGATTGATGATCTCAAATTTCGGTGATGTGTGGATATGTGCTATGTGCT TATAGATTTTATTTGAATGAGCTATGTGCATCAAGCTGTCTTTTTTGAACTAATTTTTGCATGCTGTCAAAATGTGAAGT CTTTACTTCTCTT
CDS sequence (LotjaGi6g1v0153700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCGAGTGACGGTGGTGGCAAGAGCACCGCCCGTCGGGATCATCTCCGGGAGATTGAGGTCAAGGTTCAAAAATG GTGGGAAGACAGCAACGTATTCGCGGCGGAGCCCGGCGACGCGCCGCCGAAGCCCGGCGAGAAATTCTTCGGGACTTTCC CTTTCCCTTACATGAACGGTTACCTCCATCTGGGTCACGCGTTTTCCCTCTCCAAGCTTGAGTTCGCCGCCGCTTTCCAC CGCCTCAAGGGTGCCAATGTGCTCCTCCCCTTCGCCTTCCACTGCACCGGCATGCCCATCAAGGCCTCCGCCGATAAACT CGCCAGAGAGATCCAGCGTTTCGGTGACCCACCGGTTTTCCCTCTAGAAGAAGAAGAAGAACCAGAAGAGGCTCCTCCTG ATGATGATGCAAATGCAGGTGGGAAAGTCAGTTTCAAAGGGAAGAAGTCCAAGGCTGCTGCTAAAACAGGCACACAGGTT TACCAATGGGAGATTATGAGGAGTGTTGGGATTTCTGATGATGAGATTTCAAAGTTTCAGGACCCTTACAAATGGCTTTC TTATTTTCCACCTTTGGCTGTGGAGGATCTCAAGGCTTTTGGGTTGGGTTGTGATTGGAGAAGGTCCTTTATCACCACTG ATATGAACCCATATTTTGATTCTTTTGTTAGATGGCAGGTGAGGAAGTTGAAGTCCATGGGGAAGATTGTGAAGGATGTG AGGTATACTATTTTTTCTCCTTTGGATGGACAACCCTGTGCTGATCATGATAGAGCAAGTGGTGAAGGGGTTCAGCCCCA AGAGTACACTATTATCAAGATGGAGGTGGTTCCACCTTTCCCTCCAAAGTTTGAGGTGCTTGAGGGAAAGAAGGTGTTCC TTGCTGCTGCAACTTTGAGGCCTGAGACTATGTATGGGCAAACAAATGCTTGGGTTTTGCCTGATGGGAAATATGGGGCT TTTGAAATCAATGAGACTGAGGTTTTTGTTATGTCACACAGAGCAGCACTTAACCTTGCCTACCAGAATCACTCACGGGT CCCTGAGAAACCCACTTGCTTGCTTGAGCTCACTGGCTATGACTTGATTGGCCTGCCACTAAAATCGCCTCTTTCTGTTA ATGACACTATATATGCACTCCCTATGTTGTCTATTTTGATGGATAAAGGTACTGGGGCGGTGACCAGTGTTCCTAGTGAT GCACCTGATGATTACATGGCCTTGCTTGATTTGAAGTCAAAGCCAGCATTCAGGGCCAAGTATGGTGTTAAGGATGAATG GGTGATGCCATTTGAGATTGTGCCCATCATTGAAGTTCCAGAGTTTGGAAATAAGTGTGCCGAGACAGTTTGCTTGCAGA TGAAAATCAAGAGTCAGAATGAGAAAGAGAAGCTTGCTGAAGCCAAAAAGCAAACTTACTTGAAAGGATTCACTGAAGGA ACGATGATTGTTGGAGAGTTTACTGGGAGGAAAGTTCAGGAAGCTAAACCCTTGATTAGGAGCATGCTTTTGGATTCAGG TCATGCTATTGTGTACAGTGAGCCAGAGAAGCGGGTGATTTCAAGATCTGGTGATGAATGTGTTGTAGCTTTGACAGATC AGTGGTACATTACATATGGGGAATCAGAATGGAAGAAGTTAGCTGAGGAATGCTTGTCTAGCATGAGCTTGTTTTCTGAT GAGACAAGACATGGATTTGAGCATACTTTAAGCTGGTTGAACCAGTGGGCTTGCTCACGATCATTTGGTCTTGGGACACG CATACCATGGGATGATCAGTTCTTAGTTGAGTCTTTATCGGATTCCACCATTTACATGGCTTATTACACTGTTGTGCATT ATTTGCAGAATGGTGACATGTATGGATCTAGTGAATCTGTTATCAAACCTCAACAGTTGACTGATGATGTCTGGGATTAT ATTTTCTGTGATGGACCTTTCCCTAAGTCCACTGATATTTCATCATCTCTTTTGGGCAGAATGAAGAAGGAATTTGAGTA TTGGTATCCACTCGATCTTCGAGTTTCTGGTAAGGATCTCATCCAGAATCATCTTACCTTCTGCATTTACAACCACACTG CAATTATGTCCAAGCACCACTGGCCACGTGGGTTTAGATGCAATGGGCACATAATGCTCAATAAAGCGAAAATGTCCAAG TCCAGTGGAAATTTCAGAACTATTCGTCAGGCAATTGAGGAGTTCTCTGCGGATGCTACTCGATTCTCTTTGGCTTATGC TGGTGATGGCGTTGATGATGCAAATTTTGACTTTATGACAGTAGATACTGCAATTAAACGGCTCACTAAGGAAATTGCAT GGTATGAAGAGATCCTGGCAGCAGAATCTTCTATGAGAACTGGTCCTCCATCTACTTTTGCTGATTGTGTGTTTGCCAAT GAGATTAACATTGCTGTCAAAACAACTGAGCAAAATTACTCAAACTACATGTTTCGAGAAGCACTCATAAGTGGCTTTTT CAATCTTCAGACTGCTAGGGATGAGTATAGATTATCATGTGGGGTTGGAGGTTACAATCGTGAGTTGCTGTGGCGGTTTA TGGATGTGCAGACACGTCTTCTAGCACCTATCTGCCCACATTATGCTGAGTTTATTTGGAGAGAGCTTTTGAAGAAGGAT GGTTTTGTGGTGAAAGCAGGCTGGCCAACAGCTGAGGCTCCTGATCTTACACTGAAGAGTGCCAATACATATCTGCAGGG GTCTATTGTTCTTATGAGGAAGTTGCTTCAGAAGCAACTTTCAGGTTCAAAGAAAACAAATAAGAAAGGTGCTCCTGTTG CATCACTGACAGAAAACAAGGTAACAGGCTTGGTATATGTAAAGGAACAATTTGATGGTTGGAAAGCCGAGTGCCTGAAC ATTCTCCAGAACAAGTTTAACAGAGATACCCGAACTTTTGCTCCAGAATCAGAGATATTGGAGGCTTTGCAACATAGTTC TGTTGGTCAATCTTCTAATTCAGAACAAATTCAAAAGCAATGTAGACCTTTCTTGAAGTTTATGAAGGATGAAGCCATTA AACTTGGGGCTCAAGCGCTGGATTTGAGATTGCCATTCGGTGAAATGGAGGTTCTTAGGGAAAACTTAGACTTAATCAAG AGACAGATAGCTCTAGAACATGTGGAAATTTTATCTGTAGCTGATGCCGGTTCTGTGGCTAAAGCTGGATCTCTTGCTTC TCTGCTTAATCAAAATCCTCCATCCCCAGGAAATCCAACTGCCATCTTTTTAATTCAGTAG
Protein sequence (LotjaGi6g1v0153700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAASDGGGKSTARRDHLREIEVKVQKWWEDSNVFAAEPGDAPPKPGEKFFGTFPFPYMNGYLHLGHAFSLSKLEFAAAFH RLKGANVLLPFAFHCTGMPIKASADKLAREIQRFGDPPVFPLEEEEEPEEAPPDDDANAGGKVSFKGKKSKAAAKTGTQV YQWEIMRSVGISDDEISKFQDPYKWLSYFPPLAVEDLKAFGLGCDWRRSFITTDMNPYFDSFVRWQVRKLKSMGKIVKDV RYTIFSPLDGQPCADHDRASGEGVQPQEYTIIKMEVVPPFPPKFEVLEGKKVFLAAATLRPETMYGQTNAWVLPDGKYGA FEINETEVFVMSHRAALNLAYQNHSRVPEKPTCLLELTGYDLIGLPLKSPLSVNDTIYALPMLSILMDKGTGAVTSVPSD APDDYMALLDLKSKPAFRAKYGVKDEWVMPFEIVPIIEVPEFGNKCAETVCLQMKIKSQNEKEKLAEAKKQTYLKGFTEG TMIVGEFTGRKVQEAKPLIRSMLLDSGHAIVYSEPEKRVISRSGDECVVALTDQWYITYGESEWKKLAEECLSSMSLFSD ETRHGFEHTLSWLNQWACSRSFGLGTRIPWDDQFLVESLSDSTIYMAYYTVVHYLQNGDMYGSSESVIKPQQLTDDVWDY IFCDGPFPKSTDISSSLLGRMKKEFEYWYPLDLRVSGKDLIQNHLTFCIYNHTAIMSKHHWPRGFRCNGHIMLNKAKMSK SSGNFRTIRQAIEEFSADATRFSLAYAGDGVDDANFDFMTVDTAIKRLTKEIAWYEEILAAESSMRTGPPSTFADCVFAN EINIAVKTTEQNYSNYMFREALISGFFNLQTARDEYRLSCGVGGYNRELLWRFMDVQTRLLAPICPHYAEFIWRELLKKD GFVVKAGWPTAEAPDLTLKSANTYLQGSIVLMRKLLQKQLSGSKKTNKKGAPVASLTENKVTGLVYVKEQFDGWKAECLN ILQNKFNRDTRTFAPESEILEALQHSSVGQSSNSEQIQKQCRPFLKFMKDEAIKLGAQALDLRLPFGEMEVLRENLDLIK RQIALEHVEILSVADAGSVAKAGSLASLLNQNPPSPGNPTAIFLIQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 1085 | 1081 | 0.0 | ||
| PANTHER | 5 | 1085 | 1081 | 0.0 | – | |
| SUPERFAMILY | 17 | 761 | 745 | 1.21E-94 | – | |
| TIGRFAM | 19 | 1050 | 1032 | 1.3E-268 | ||
| Pfam | 24 | 106 | 83 | 5.7E-8 | ||
| ProSitePatterns | 56 | 67 | 12 | - | ||
| MobiDBLite | 118 | 145 | 28 | - | – | |
| Pfam | 187 | 756 | 570 | 3.1E-29 | ||
| SUPERFAMILY | 283 | 517 | 235 | 1.22E-28 | ||
| Coils | 451 | 471 | 21 | - | – | |
| CDD | 530 | 758 | 229 | 1.152E-67 | – | |
| CDD | 756 | 876 | 121 | 2.14011E-40 | – | |
| Gene3D | 758 | 876 | 119 | 3.0E-7 | – | |
| SUPERFAMILY | 766 | 892 | 127 | 2.88E-17 | ||
| Pfam | 798 | 915 | 118 | 2.2E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA editing activity | The hydrolysis of an incorrectly aminoacylated tRNA. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Leucine-tRNA ligase activity | Catalysis of the reaction: L-leucine + ATP + tRNA(Leu) = AMP + diphosphate + 2 H(+) + Leu-tRNA(Leu). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Leucyl-tRNA aminoacylation | The process of coupling leucine to leucyl-tRNA, catalyzed by leucyl-tRNA synthetase. The leucyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a leucine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. |
Expression pattern of LotjaGi6g1v0153700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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