Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0205900 |
| Transcript ID | LotjaGi6g1v0205900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Two-component response regulator; TAIR: AT2G25180.1 response regulator 12; Swiss-Prot: sp|Q6K8X6|ORR23_ORYSJ Two-component response regulator ORR23; TrEMBL-Plants: tr|A0A0B2Q5E5|A0A0B2Q5E5_GLYSO Two-component response regulator ARR12; Found in the gene: LotjaGi6g1v0205900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50301643..50306997) extracted from Lotus japonicus Gifu genome v1.2.
GAGAGAATCACATCACACACACTATATTTTATAAATATATAAAAAAGAAGAAGAAGGTGAAGATGCAAGTTGCATTATTG TGGTATTTTGCATCAGAAGAAGAAGATTAACAAATAATTAAAGTCAAAGGCTTTTTTCACTGTTCCATCCTTTTGTTAGA GAAAAAGTGAAGGACAAATAACAGAGCAGAGAGCACGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAACAACA ACACTTTCACTAAATTACTAAAATACTCAAAAAGATTTCTGTTTTGTTTTGTTGGCTTCTTCAAATCCATCACTGTCCAT TTTTTCTGCAGGTTTTGTTGTTACCCTTCTTCTTCTCCATTTCAACATTTCTCTCTCTTCAGAGTGTTCCCTTTACCCTC TTTCTCTCTTGCTTGCTTACCCTTTTGCTGTTGGTGAAAGAGAGGCCTTGAGGGCAACGTTTTGGGCTTCAAAATTGAAG CTTTTTGCTATTGGAGCCTTGATCTCTGTGAAAGTAGTTCTTTTTCTCATCTGGGTATCTCTGAAAGCTTGATATGGCTG TGGAGAATCAAAGGGGTCATTTGGTGGATGAAGATGCGGGCCGTGACAGGTTTCCTGTGGGTATGAGAGTTTTGGCTGTG GATGACGACCCTACTTGTCTCAGAGTGTTGGAGAATCTGCTCCGCAAATGCCAGTATCATGGTAAATAGCTTTTTGTGTT TTGGTTCTGTGAAAATTCAGTAATTGTGATGAAATTACAACATATTCTGGTAGTATTGAGATGTAAAAATCTGTTCTTTT GTTGAATTGAGCCTTGAATTTGTTGTTACTTTAAGGTTTTAGATGCATTGTGGATGTATGCTGTGTTTATTGTCATTTAT GCATAAACATCAGTTGACCAGGCCTAATTCTGATTCCAATTTCAAAATTTGTGATTTTGCAAGATGGGAAAATTCTTACC CTATCCAAAGTTGAAAACTTTAGTTCAATATTGAATTTTTTTTATGATTAGGGAAAACAGAAATAAGTTGGTAATAATTT TTTTTGTTTGTGGTGGTTGTTGCAGTTACAATAACTAATCAGGCGGTTGAGGCGCTGAAAATGTTGAGGGAAAACAGAAA TAAGTTTGACCTAGTTATCAGTGATGTGAATATGCCTGACATGGATGGATTTAAGCTCCTTGAGTTGGTGGGACTTGAAA TGGACTTGCCAGTTATCAGTAAGTGCATTTAACCTTAGCTTTACTTCTCCATTTTCTGAGGTTGTTCTTTTACTGTTAAA AAGATTCTTCTAATCACAGTTCAATTTGTTCGAATTATTTTCCTCTTGTTCTTCTCAAAAGTAAGGAGTTAATTTACCCT CACAAGAGTTAATTATTTTGGTAGGAAGTATGGTCTTAAGAATGATAATATGTCTCACAATAATGGGTTGAATAGGTTCA TTGACTTGGACTGTTGTTCTTTTTTATCTTGTTCTAGTGTTGTCAGCACACAGTGACACAAAGCTGGTGATGAAGGGTGT TAGACATGGTGCGGTTGACTATTTGTTGAAACCTGTTCGAATTGAAGAGCTCAAGAACATATGGCAACATGTTGTTCGAA GAAAAAATTCTGATGGAAAGGATCAGAATAAGGCTTCCAATGAGGAAAGGGGTCCTAATGTGTCTGGGGGAGGCAGCCAA GGCATCATATCGGAAAACAGTGCTGACCAGAATAGAAAGCTTGGAAAAAAACGGAAGGACCAAAATGAGGAAGAAGATGA AGACGGTGATGGGAATGGAGAGGATGATGATCCATCATCACAGAAGAAACCTCGTGTGGTTTGGTCTGTTGAGCTGCATA AAAAATTTGTTGCCGCTGTTAATCAACTCGGCCTAGATAGTGAGTTTTTGACAATGCAGATATACCTTACGAAATTTGTT TGATGTCATTTCATAAAAACTTCTTGTCTCAATATGGGTCCTATAATTCCTAATACCTGGTTTATTCTCCTGCGTTGCAG AAGCTGTTCCTAAGAAAATACTTGACATGATGAATGTTGAAGGGCTTACAAGGGAAAATGTGGCTAGCCATCTGCAGGTA AATATAAGCCTACCTTTGTAGTTATCTTAACGGTTTTATTTAGCCTTTGACAAATCATGGAATGAATATTTTTTAGATAA GATGACTCATTAAATTTTGTTCAGTGGAAACATAATGAAGCGAAAGCATGTACAATGAATTAACAACTTTGGGAAATTGT GTAGCAATATCAGTATCAATAGTCAAAGTGTTAAGTTAAGAACTTCGCGTTCTCTTGAAAAGTGTGCCTAGTATAATATT ATATTCATTTTAGTAAAACATGATAGATCAAATTCACAGAATTGCTTGAAACACATGTTTTCAAGTCCCACCTAATAAAA GGTTGATTTCTGGAACAGCTTTGAGTTTCTGACTATTATTTGTCTAATCAAGCAGAGATGTACTACTTTGAACATGCACT AGTTTGTTTAATTGCATGTGTGCTACTTAAATAGCTCTTTATTAGCTCACAGTTCAGCTTATTGCATATTAAGCTCAATG TCCTTATGTGTTGCAGAAATATAGACTCTATCTGAAAAAGGCAACCCAACAAGTTAACATGGTTGCTGCATTTGGTGGTG GTGATGCTTACCTGCGTATGGGTGCTATAGATGGCTTTGGAGATTTCTGCACCTCGTCTGCATCTGGAAGGATCTCAAGC GCCACATTGCCATCATATGCGTCAAATGGAATTTTTGGTAGGCTGAATTCCCCAGCTAGCTTGAGCTTGAGAGGAATTAG TTCTCCTTCACTAATTCGGCCAGTTCCGTCTCAAAACATCAATAATTCCTTAAACACACTTGCAACCATTCAGCCATCCA TATTTCCTGCAAATCAAAGCCCAAGCTTACTGCAGGGCATTCCAACATCAATTGAGCTGAACCAATCTAAGCAAAATGGC TGTCCAACTGGCATATCGCAGTTAAGTCAAGTTGATTCAAGTAGATTTGCAGTTGCTGCCTCTGGCTTCTCAGACAGTAG GGCTACTGTTAGTAATTCAAACAGTTCTCTACCCGGTGTCTCAAATAATCATTTAATGTTACATGGAAATCCACACCAAA CGCATAATGCAGGAGCTTTTAGAAATCAGTCTTCTGTTAGAGCGCCTTCTTTGAGCACAGACTCTTTTGACATTGGCATT GGTGGTTCATCTAATTTATTGGATTATAATCGGTGTAATGAAAATTGGCAGAACGCATCTCAGCTGTCTAAATTCCCTGC CAATTCTTTACCACTGTGTGAGGCTTTCAATAATGATCAACTGCCTCCAACTAGCATAAATGTTTCTAACTCGAGTACTC ATATTGGTAACAGTCAGGTGGGTTTTTCTTCTGGAATCGCAATTGCTGCTCCTATGGGTGATGCTAGAAATGATCTGCGA TGCCAAGAAGGCTTAATTGGGAATGTCATACAGCCTTCAAGTTACACAGCACGAGAAAGGTGGGAAGATTACAACCAAAA CACAAGTCGTCCCTTCAATCCTGTGAATTCACAGGTTTCTCCCCATGGAGTGACGGGTTCTTTACGGAATAGCTTAAGCC AAAATAAAGCAATGTGCAGCAATAGTGCATCTTTGGCTGGCCATCTAAATGGTGCTTCCACATCAATTGCTCGGTGCACT GAAGTTGAGAATTTCTCTTCGGACATGCGATTGAAGTCAAATGAGGCCTACATGTTGGAGCAGATGAAGTCCCATGATGG GTTTATGCAAAATTTTGGGACCTTGGATGACATCATGGGTGCAATGGTCAAAAGGGTATGACTTCTGTCGTTCCATTCTT AAGAAGAAACTATAAGGTTTCTTCCTCTTCCCTTTTTGCCCCTTAAAATGCTTTTCTGATTGCAACGGTATCATGATACA AGTAAACACTTTTTGAGTTTTGTTTGTTGCTTTTGGATGTCTGTGTATGTGGTTCTGTTCCTCTGGTTTGTCACTATTGT TTTAAACTTCATAACCTAATTTTATTATTAAAAATTAACCTTATAGAAATAATGCAAAAAAAGTATCATATATTTTGATG TCCATCAAGTTTTGATGAGATGAGCATTAGTGTATGAAAGATGAAACTTATTGCCAAGTTTCTTTTTTATTTGATGTTGA TATTTCTCAGTTTCGTTTTAATTTGGTGGTGCTTTTCATTTGCAATGGAATATATGAAGGTGATGACACTTTGTTCAATC AAATTTCACCATCACACTAGCTGCATATGCCTTTCCTGTCTTTTTATTTTCACTTGTTTCATTGTTTGGAAGGTTATACA ACTGAATTGTGTTCAAAATTTACTAAACTGATTAAGATGAACATGCAAACTGAGAATTCTGATTTCATTGTTTAAGATTA ATGTAAATATATGATGATGCAATATAGTTTCTAAACGATGAATTTGATGCTTCACTAATTATCAGACTCAAACTGATTTA TTGAGTTTATGGGAGACTGGTGTAGTTTTCTAGTAATTTATATTATAGTGATATGTGTCTATTTTTGTTTCATCATTTCA TGAAGGACTTTGTAATGCAGGAACAAAATGAGTTGACTTTGATGGATGGAGAAATGGGATTTGATGCTTACCCTGTTGGA TCATGCATCTGATTTCTTCTTATTCAGCATGCAACAAGGAGCATCAAAATTGTGAAACTTACTCCTTTCACTGGAGCCTA GTTCATTATAGTTTCTCTTTGATGTACTTTTTTTTTAATGTTCTGCTACCAAACTTCTCATTTGCTAACTTTTTTTCTTT TACTTTTGGACATATATGTTAGCTATCTGATCCGGTTCAACGTCAAAAATTTCTGACAGTTTTCTTTTCTGATAAATAAT GTGTTATGAATGTATTTATTAGTTCTTGTTTCTTTCTTACTTTCTGGTGTGGAATTTGTACTTCAATTTAATTTTTTTTT TGGCAAAACTAGACTTGAAAATATGAAAAAAGTTAAAATTGGTAAGCAACCTGTTTATACTTTATTCTGCTACTGTTTAC ATTTTCAGTAACATGAAAGGGACGTTGAAGTGATTTTCTATGATGTTCAATATTTTTTTTCAGAAAATAGTTTTTTGATG TAGTTTTCAAAGCTTTTTTGAGTAGTTACTTCTTTTGAACTGAAACATCTTTAGAAAATTAGTTATCTAAGTTTATTGTA AAATTTATTTGATATTGAAATATACGAGAAGCCATGATATGATGGATGCTATGGTTTTGTCAAGTTTTATCTGGGAGCCC TTGGTACTCATCTTATTTCAAGCATAGCTTAGCAGGAGATAGGGAATTGTTTTTCATGTCCCTCTTTTTCATTTT
CDS sequence (LotjaGi6g1v0205900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTGGAGAATCAAAGGGGTCATTTGGTGGATGAAGATGCGGGCCGTGACAGGTTTCCTGTGGGTATGAGAGTTTT GGCTGTGGATGACGACCCTACTTGTCTCAGAGTGTTGGAGAATCTGCTCCGCAAATGCCAGTATCATGTTACAATAACTA ATCAGGCGGTTGAGGCGCTGAAAATGTTGAGGGAAAACAGAAATAAGTTTGACCTAGTTATCAGTGATGTGAATATGCCT GACATGGATGGATTTAAGCTCCTTGAGTTGGTGGGACTTGAAATGGACTTGCCAGTTATCATGTTGTCAGCACACAGTGA CACAAAGCTGGTGATGAAGGGTGTTAGACATGGTGCGGTTGACTATTTGTTGAAACCTGTTCGAATTGAAGAGCTCAAGA ACATATGGCAACATGTTGTTCGAAGAAAAAATTCTGATGGAAAGGATCAGAATAAGGCTTCCAATGAGGAAAGGGGTCCT AATGTGTCTGGGGGAGGCAGCCAAGGCATCATATCGGAAAACAGTGCTGACCAGAATAGAAAGCTTGGAAAAAAACGGAA GGACCAAAATGAGGAAGAAGATGAAGACGGTGATGGGAATGGAGAGGATGATGATCCATCATCACAGAAGAAACCTCGTG TGGTTTGGTCTGTTGAGCTGCATAAAAAATTTGTTGCCGCTGTTAATCAACTCGGCCTAGATAAAGCTGTTCCTAAGAAA ATACTTGACATGATGAATGTTGAAGGGCTTACAAGGGAAAATGTGGCTAGCCATCTGCAGAAATATAGACTCTATCTGAA AAAGGCAACCCAACAAGTTAACATGGTTGCTGCATTTGGTGGTGGTGATGCTTACCTGCGTATGGGTGCTATAGATGGCT TTGGAGATTTCTGCACCTCGTCTGCATCTGGAAGGATCTCAAGCGCCACATTGCCATCATATGCGTCAAATGGAATTTTT GGTAGGCTGAATTCCCCAGCTAGCTTGAGCTTGAGAGGAATTAGTTCTCCTTCACTAATTCGGCCAGTTCCGTCTCAAAA CATCAATAATTCCTTAAACACACTTGCAACCATTCAGCCATCCATATTTCCTGCAAATCAAAGCCCAAGCTTACTGCAGG GCATTCCAACATCAATTGAGCTGAACCAATCTAAGCAAAATGGCTGTCCAACTGGCATATCGCAGTTAAGTCAAGTTGAT TCAAGTAGATTTGCAGTTGCTGCCTCTGGCTTCTCAGACAGTAGGGCTACTGTTAGTAATTCAAACAGTTCTCTACCCGG TGTCTCAAATAATCATTTAATGTTACATGGAAATCCACACCAAACGCATAATGCAGGAGCTTTTAGAAATCAGTCTTCTG TTAGAGCGCCTTCTTTGAGCACAGACTCTTTTGACATTGGCATTGGTGGTTCATCTAATTTATTGGATTATAATCGGTGT AATGAAAATTGGCAGAACGCATCTCAGCTGTCTAAATTCCCTGCCAATTCTTTACCACTGTGTGAGGCTTTCAATAATGA TCAACTGCCTCCAACTAGCATAAATGTTTCTAACTCGAGTACTCATATTGGTAACAGTCAGGTGGGTTTTTCTTCTGGAA TCGCAATTGCTGCTCCTATGGGTGATGCTAGAAATGATCTGCGATGCCAAGAAGGCTTAATTGGGAATGTCATACAGCCT TCAAGTTACACAGCACGAGAAAGGTGGGAAGATTACAACCAAAACACAAGTCGTCCCTTCAATCCTGTGAATTCACAGGT TTCTCCCCATGGAGTGACGGGTTCTTTACGGAATAGCTTAAGCCAAAATAAAGCAATGTGCAGCAATAGTGCATCTTTGG CTGGCCATCTAAATGGTGCTTCCACATCAATTGCTCGGTGCACTGAAGTTGAGAATTTCTCTTCGGACATGCGATTGAAG TCAAATGAGGCCTACATGTTGGAGCAGATGAAGTCCCATGATGGGTTTATGCAAAATTTTGGGACCTTGGATGACATCAT GGGTGCAATGGTCAAAAGGGAACAAAATGAGTTGACTTTGATGGATGGAGAAATGGGATTTGATGCTTACCCTGTTGGAT CATGCATCTGA
Protein sequence (LotjaGi6g1v0205900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVENQRGHLVDEDAGRDRFPVGMRVLAVDDDPTCLRVLENLLRKCQYHVTITNQAVEALKMLRENRNKFDLVISDVNMP DMDGFKLLELVGLEMDLPVIMLSAHSDTKLVMKGVRHGAVDYLLKPVRIEELKNIWQHVVRRKNSDGKDQNKASNEERGP NVSGGGSQGIISENSADQNRKLGKKRKDQNEEEDEDGDGNGEDDDPSSQKKPRVVWSVELHKKFVAAVNQLGLDKAVPKK ILDMMNVEGLTRENVASHLQKYRLYLKKATQQVNMVAAFGGGDAYLRMGAIDGFGDFCTSSASGRISSATLPSYASNGIF GRLNSPASLSLRGISSPSLIRPVPSQNINNSLNTLATIQPSIFPANQSPSLLQGIPTSIELNQSKQNGCPTGISQLSQVD SSRFAVAASGFSDSRATVSNSNSSLPGVSNNHLMLHGNPHQTHNAGAFRNQSSVRAPSLSTDSFDIGIGGSSNLLDYNRC NENWQNASQLSKFPANSLPLCEAFNNDQLPPTSINVSNSSTHIGNSQVGFSSGIAIAAPMGDARNDLRCQEGLIGNVIQP SSYTARERWEDYNQNTSRPFNPVNSQVSPHGVTGSLRNSLSQNKAMCSNSASLAGHLNGASTSIARCTEVENFSSDMRLK SNEAYMLEQMKSHDGFMQNFGTLDDIMGAMVKREQNELTLMDGEMGFDAYPVGSCI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 656 | 656 | 6.0E-272 | – | |
| PANTHER | 1 | 656 | 656 | 6.0E-272 | – | |
| PIRSF | 1 | 696 | 696 | 9.1E-164 | ||
| Gene3D | 21 | 158 | 138 | 4.4E-36 | – | |
| SUPERFAMILY | 23 | 144 | 122 | 4.27E-37 | ||
| SMART | 24 | 136 | 113 | 6.5E-35 | ||
| ProSiteProfiles | 25 | 140 | 116 | 44.632 | ||
| Pfam | 26 | 134 | 109 | 1.1E-25 | ||
| CDD | 27 | 139 | 113 | 6.86076E-31 | ||
| MobiDBLite | 143 | 212 | 70 | - | – | |
| MobiDBLite | 156 | 177 | 22 | - | – | |
| MobiDBLite | 178 | 192 | 15 | - | – | |
| Gene3D | 207 | 270 | 64 | 9.4E-33 | – | |
| ProSiteProfiles | 208 | 267 | 60 | 11.409 | ||
| SUPERFAMILY | 209 | 268 | 60 | 7.17E-20 | ||
| TIGRFAM | 211 | 264 | 54 | 2.0E-24 | ||
| Pfam | 213 | 263 | 51 | 5.2E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Phosphorelay signal transduction system | A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi6g1v0205900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…