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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0221900 |
| Transcript ID | LotjaGi6g1v0221900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP dependent RNA helicase; TAIR: AT2G40700.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q7XJN0|RH17_ARATH DEAD-box ATP-dependent RNA helicase 17; TrEMBL-Plants: tr|A0A0S3RHP0|A0A0S3RHP0_PHAAN RNA helicase; Found in the gene: LotjaGi6g1v0221900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:52639339..52645684) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCTTTTAGGGTTAAAACCGGTTGCTCCGGTTCACGACCGGTTTGATTTTGTCCGGTTTTCTTACATATCGGACCGGG CAATACTGCGGTTCCCGGTTGAACCGATTGGCAATTTGATAAACCCTAACAAAGAGGGTTTTGAATTTTGATTGAGAAGA AGATGATGGAGACGAAGAAGAAGATGAAGAAGAGTACACAAGTGGTGCAAAGTAAAGATTTTGAGAAGAAGGGTGTTGCT GGCAATGGTGCTAGGAATGGAAGCTGTGGAGATAACAGTGTTTTTGCTTCTTGTTCGTTCTCAAGCCTTGGCCTTCATTC CAGTTTGTGTGACCAACTTCGTGGTATTGTTTTAACTCTCCGTTTGTTTCGTGAATTTGGCTGCAATTGTTCATGGGCAA GATGCAATTGTCCAAAGTTTTAGTCTTTTTGACACTGTTTTGTTTAGTTGATTCATTGGGAGTGCTGAGAAAATTTTGGT TTTTTACAGATAGGTTAGGCTTTGAAGCTCCAACTTTGGTGCAAGCTCAAGCAATTCCTGTCATCCTCTCCGGGCGCCAT GCGTATCCTTTTTGTTGTTGTTGTTGTTGTTGACTTGTTGTTGTTGTTGTTGTTAACTCAATAACTCTTCATTTTGTTTT TGAAATTGTGTTCTTTAATGAGAAGCTTTTAGCCTGGTTAATGCGGCCACGGGCACAGGGAAGACTATTGCCTACCTGGC TCCTATCATTCATTACTTGCAGAGTTATGATAACCGAATCCAGCGTTCTGATGGAACATTTGGTGTGTCTTCTTTTCATT TTGAACATGATTTAGTTTGGTTCCATTATGTAATTACTTTTCTTCCCCACAATTTTACTGTTTGTTCAGACTTGTACCGT TCCAGACTGACTATTTTTCAAACTGTTAAGATAATGAAAAAATAATTCTTTCTTCAAAGCTGTTGACTTTCATATTACTT GTTTAGAGGAAAAGATTTGTGAAGTTTAAATTTTGATGACCAGCTCTCCCAAAAGACAAAATCTTATATGAAGGCATATG AGTGTTTTTATCTCTAGCACACTACTCATGCGAAAGTTCTTTTCAATTGAAGTGTGAAATTTGAACCCACCCGCTTTACC TGTGCTTAAGTTCAATGTTATTTAGTAGAAGAATGGGGACAACAAGGATTGAACTCTTGACCACTTGGTTACATAGACTC TAATACCTTGTAAATTATTAACCTTCCCAAAAGCTTAAATTGTTAAGGGAAGACAGATGAGTTGTTGATTCGGCATCAGA TACATATGCCAAACTGTATTCATGCATATTATAGTATGTCTTCCCTTAAATTGTTAAAGGAAGACAGATGAATTGCTTTA CATCTCTAATATTAAAGATGATTCTTCATCAGATACATATGTCAAACTGTATTCATCCTTAGTAACTAAACTTTTTGCTG AATTGTTTATGGTATGTAACTAATTCGATTTCACTACTTTGATTGATTTATTGGCAATAGCGTTGGTTCTTGTACCGACG CGAGAGCTATGTTTGCAGGTTTATGAAATTCTTGTGAAGTTACTGCACCGGTTTCATTGGATTGTTCCAGGATACATTAT GGGTGGTGAGAATAGATCCAAGGAGAAAGCCAGGCTGCGCAAAGGTAGAAACCATGTTTATTCATCATTAACAGTCCTCT GCTGACTTTATCTTTAAAATTTGTTTTGTTTTAGTTGTCCAACAATCCAATCAGAAATATGGTGGGAATGAAATTATAAA TGAAAAGAGATTAGTGTTATAGTATCCTTTGGGATGACTAAAAGAAAATTTGTTTTTTACAGAAAGGAAATTTCATGTCA TGATGAAAAACATTGTTTGATTGATTATATTTATAACCTTGGTTGTTCCTATTTAGGTATATCAATTCTTATAGCAACTC CTGGGCGCCTTCTAGATCACTTGAAGAAGACATCATCATTCGTATACACAAATTTGCGCTGGATAATTTTTGATGAAGCT GATCGGTATGGTTCGCATCTACTGCTTCAGCAGAAATTACTGTTTGTTGGCATATTAAATGTGGTACTGTTTTCTCAATG TGTTGTTTTCTTTGCACTATATAATCTCATGAACTAACAAGCTTCATATTTTTTTCTCCAGGATTTTGGAATTAGGATTT GGAAAAGATATAGAGGAAATACTAGATCTTTTAGGTTCAACGAGAACCGGGTGTGATGACCAAGAGAATGCAGTTCCTGG AGCCTCTAAAACTCAAAGACAGAATTTGCTATTGTCAGCCACCTTAAATGAGAAAGTAAACCACCTTGCCAAAATTAGTC TAGAGAATCCGGTGATGATTGGTCTTGATGATAAAAGCATAGAACCAATTTCAACAACTGCAAGCCTTGATCACGCAGAA CCTGATGAAGACAGTGAAGAAAAGTATTCCGGTAAAATACCAACAGTTGGTGATTATAAAGTTCCTGTACAGTTGATTCA GAGACACGTGAAAGGTTTGTGAAGACTATTAATTAGAAACATCTGCAGTGAGCCTTCTACGTTAACATAATGTTTTCAAT ATCCTCAATTTCTACTTTGATTGCTTTGCAGTGCCTTGTGGTTCACGCCTTCCTGTACTTCTTTCAATTCTAAAGCATCT TTTTGAAAGGGAACCTTCACAAAAGGTAAAGCTTAGCTTTAATCTTCAGCCCCTATGCCTGGAATCTGTTTCTTAGATGG GTTGAAATTAGTAGATTTTGCCATCCACACATTCCTCTCGTTGTTTACAATGGTTAAATTATTGCTTGCCAGTTGTCAAT TGGTGTATAATAGCATGATGTATGTATCATGTGGTACTCTTGGTGTAATTTTGTGAGACATATGTAGATGAAGACAAAAA TATCTCTTGGTTAGTATGCTAATATAATATTAAAGAGTGTTAGTTACCAAAAAAAATTCCATATTATTCTGGTTGTGGGA CTGAAACTTATATTAGCAAGAATGAATCTGCATCTATCCTTTCCCTTGCTAATCAAAGCTATTACAAGTCAAAACTCAAA ACATTATACTTCATTATGGCATCATTCATCTATTTTTGATTTCACAGGTTGTGGTATTCTTTTCAACATGTGATGCGGTG GACTTTCACTATTCACTGTTAAAATCATTCAAATTTTCGTCATATCCACAAATAGAAGAAGGGGACAAACAAATGTTTCT GGGATGCAAAATTTTGCATTTACATGGTAATATGGAACAGGAGAACCGAAGAACAAGTTTCCAGGCCTTTAAAACTGAGA ATTCTGCTCTGCTTTTATCGACTGATGTTTCTGCTAGAGGTCTGGATTTTCCAAAGGTTAGATGCATCATACAATATGAT TGTCCAGGGGAAGCTACTGAATATGTGCACAGGTATCTGCTTTTTGCTTAGTTTTTTGTGTGTGTGTGTGGGGGGGGGGG TTGCTCATTTAATCAATCATCTCTTCTTGTTCCGATTGTAACCTAAATACTGCTTGGAACATATGGGCTGCATGATGTAT ATTTTTTTAAAGAAAATTGGGTTCATCAATTGTGGTTACTTAGTATGTGCAATGTTGTTTAAGAAGAGTATTTGCACACA TAATCTGTAAAGTTTTCCTTCAAAAGGTACATTGATACATGTCAAACATTCATGCATAATTTAGACTCAAAATTAAGCAT CAAAGTCAATAATATTATAGAAGCTAGAGTTAGGAGGCTTTTGATTAAACTTATTAAAATAGCTTTTTACCAACGGTTCT CAAATTTCTCAGATAGGCTTATGAATGAGCGCTGATACTTACCTAGTCTTTTGAGCTTATTTAAATAAGCTTATAAATAA GTGCTTATTAATATAAGCGCTTAATTAAGCTATTTATCCAAACACATTAAATATGTATGTGTGAGGGAGATTCATTAACT TATAAGAAACAATAGTAATCATATCTTCTATTGCTTTAGGATGGTAAAGGACTGTAAAATTAATCAATATCATGAATAGT TAAATGATCCCCATCTTGTTCCAAATTTTACTTGTGATGCTTTTGAGCAATTTTTTGTTTACTTCATCTTACAATGATTT AATGATGAAATTGAAAGAATTTTTATATTTTTAGAAGCCTGAAGGTTTGTTTTGCACTTCTATGAGTGACTTTAACAATC ATTAGTAATGGAGCTTGTTCCACTGGATAGCTAGTAGATTCAAAGTCATATTCGCTATTCTTCCTTTATGAATACCTATA CTATAATCTTCCAATATGACTGGAAATGCTATCTTATCTGAGCCATCATGAATTCATTATGCAGAGTTGGTAGAACTGCT CGCCTGGGGGAAAAAGGAGAGTCACTATTATTTCTACAACCAATTGAAATAGACTATTTACAGGACTTGGAGAAACATGG TGTCTCACTAACAGAGTATCCTCTCCTCAAAGTGTTGGATTATTTCCCCCTACATGGACAAAGTAAACACTTAAAGAAAT CAGTTTTCATAGACTCGCATCCCTGGGTGCTCTGTCTACAGAAGGCACTTGAATCCTTCATAACATCCAAGGTGATTTTC ATTGCTGGTCTTATTGTTACATTTGTACTGATTATCTATGTCTTATCCAATAGAATGTCATTCAAAACGTTGTATTTTAA CTTTTGATTCCTCTTGAGTTGAGTAACATGCAATTTAAGTTCATTTTGAATCATCATAGATTCATCTTTTATATGACAAT TAAACATTAAAAAAAGTTCCCCTAACATTAAAAAACATTAACATCTTGCATACTATTGTGCTGCCCCGTTGTGTACTTTT TTGCCCCATTGGGTCATTTTGCCCCGTATATAACTATGAATGCTAATAGAAATGCCCCTAACAAAATGACCCAACGGGGC AGCACAATAGTATGCAAGATGTTAATAGATTGGTTTAAAATCCACTGATAAACCAAAATAACATGCCAAATAGATTTGAT TTGTTTGCGCTGTTAGGAAGTTTTTGAGAATAGAGAAAGGGAAGGTTAGAGCAGGGAAATGAGTGGGACTTCCATCTGTT CACATGCTAAAAGTGAGGAAATACTTGATTACTTTAGAGGCCGATTCCACAAGTTGAACTTATGATTTCTTTTGTCCACA ATTTGGGATTTCAAACACCAACACAAAAGCTTAAACATTTGGTTAAGACTGATCTTATTCTTAATAATTATCAGTCAAGC ACGCACTCGGTCAAAGATCTAAGAGCATCCTGCATATCAGTAGTTTCCCCCCCTTCCATCTTCAATTGTGGTGACTGGTT TATTCCTTATGATTTCACTAGACATCAATGTTTTCCATATATGATTTTACAAGAGTTCTTTGTTTCTTCTATGTATTCAT AAACCGGTTGTTGCCTTGTCTTTTTCAGCCCAAGCTGGATGAACTTGCCAAGAGGGCATTCTGCTCTTGGGTCCGTGCAT ACACAGCCTATAAGGGTGATCTGAAAAAAATATTTCTGATCAAGAAACTTCACTTGGGGCATGTAGCAAAAAGCTTTGCA TTGAAACAACAACCCTCCTTAGTTGGAAAGTCATTCCAAAAGCAAATTAAGAAGAGAAAGAGATATGAGAAGAATAATGG GCTGTCAAATAAGAGAAAAGTTGCGAGGGTGACATAATGCAGACCATGAAAATGGCTGATGCCATGATTTTGATGAAGCA AATGATGTCAAATGATGACATTGGATGATGGATCCTGTGAGACCAGAATCCAAATCATGCATCAACAAAGTGGTCATTAA TATCGTGTTTGAATTGGTGATGACATACAATCTAAAAAATGGTAACTCTAGAAGCTACCTTTGAAGCTTCTCCCTATAAT TGATTATAGGACTTTCACTGCGGAACCAAACACACTACTACTGCAGCATCAAGGCCTTTTGGCCCTGTTCATTCTCAAAT TGCTAACCTGGGTTTTCTTATGGCTGATGCTTGCATGTATACACTAATCTACAATGTGCTTTTAGTTGGTTTGGTAATTT AGTATTATTGTCACATGGAGCTGAGTCAATTTGTTACTTGTTAGGTTCATAATCCTTTCAATAGATAACTTGTGGCTCAG TGGTTCTTGTTCATGCAACTTCATTATTATTGTTATTTCGATCTATAAAAGATAATGCTTTCTATGTATTTCATTACAAT CACAATCTGATCATTACCACATCTCAATCCTAATTTAAAATTCTGATGAGACTCATGTGAAGCCACAGGCATGTGCTACC ATATTACTAGTTATTGAATCCATTATTAAATCTCAAGCTCTTTTTTTAAGTTATTGAATTATATATGTAGAAAGAATATT ACAGCCTGCAACTGCATGTTTTCCAT
CDS sequence (LotjaGi6g1v0221900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAGACGAAGAAGAAGATGAAGAAGAGTACACAAGTGGTGCAAAGTAAAGATTTTGAGAAGAAGGGTGTTGCTGG CAATGGTGCTAGGAATGGAAGCTGTGGAGATAACAGTGTTTTTGCTTCTTGTTCGTTCTCAAGCCTTGGCCTTCATTCCA GTTTGTGTGACCAACTTCGTGATAGGTTAGGCTTTGAAGCTCCAACTTTGGTGCAAGCTCAAGCAATTCCTGTCATCCTC TCCGGGCGCCATGCCCTGGTTAATGCGGCCACGGGCACAGGGAAGACTATTGCCTACCTGGCTCCTATCATTCATTACTT GCAGAGTTATGATAACCGAATCCAGCGTTCTGATGGAACATTTGCGTTGGTTCTTGTACCGACGCGAGAGCTATGTTTGC AGGTTTATGAAATTCTTGTGAAGTTACTGCACCGGTTTCATTGGATTGTTCCAGGATACATTATGGGTGGTGAGAATAGA TCCAAGGAGAAAGCCAGGCTGCGCAAAGGTATATCAATTCTTATAGCAACTCCTGGGCGCCTTCTAGATCACTTGAAGAA GACATCATCATTCGTATACACAAATTTGCGCTGGATAATTTTTGATGAAGCTGATCGGATTTTGGAATTAGGATTTGGAA AAGATATAGAGGAAATACTAGATCTTTTAGGTTCAACGAGAACCGGGTGTGATGACCAAGAGAATGCAGTTCCTGGAGCC TCTAAAACTCAAAGACAGAATTTGCTATTGTCAGCCACCTTAAATGAGAAAGTAAACCACCTTGCCAAAATTAGTCTAGA GAATCCGGTGATGATTGGTCTTGATGATAAAAGCATAGAACCAATTTCAACAACTGCAAGCCTTGATCACGCAGAACCTG ATGAAGACAGTGAAGAAAAGTATTCCGGTAAAATACCAACAGTTGGTGATTATAAAGTTCCTGTACAGTTGATTCAGAGA CACGTGAAAGTGCCTTGTGGTTCACGCCTTCCTGTACTTCTTTCAATTCTAAAGCATCTTTTTGAAAGGGAACCTTCACA AAAGGTTGTGGTATTCTTTTCAACATGTGATGCGGTGGACTTTCACTATTCACTGTTAAAATCATTCAAATTTTCGTCAT ATCCACAAATAGAAGAAGGGGACAAACAAATGTTTCTGGGATGCAAAATTTTGCATTTACATGGTAATATGGAACAGGAG AACCGAAGAACAAGTTTCCAGGCCTTTAAAACTGAGAATTCTGCTCTGCTTTTATCGACTGATGTTTCTGCTAGAGGTCT GGATTTTCCAAAGGTTAGATGCATCATACAATATGATTGTCCAGGGGAAGCTACTGAATATGTGCACAGAGTTGGTAGAA CTGCTCGCCTGGGGGAAAAAGGAGAGTCACTATTATTTCTACAACCAATTGAAATAGACTATTTACAGGACTTGGAGAAA CATGGTGTCTCACTAACAGAGTATCCTCTCCTCAAAGTGTTGGATTATTTCCCCCTACATGGACAAAGTAAACACTTAAA GAAATCAGTTTTCATAGACTCGCATCCCTGGGTGCTCTGTCTACAGAAGGCACTTGAATCCTTCATAACATCCAAGCCCA AGCTGGATGAACTTGCCAAGAGGGCATTCTGCTCTTGGGTCCGTGCATACACAGCCTATAAGGGTGATCTGAAAAAAATA TTTCTGATCAAGAAACTTCACTTGGGGCATGTAGCAAAAAGCTTTGCATTGAAACAACAACCCTCCTTAGTTGGAAAGTC ATTCCAAAAGCAAATTAAGAAGAGAAAGAGATATGAGAAGAATAATGGGCTGTCAAATAAGAGAAAAGTTGCGAGGGTGA CATAA
Protein sequence (LotjaGi6g1v0221900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMETKKKMKKSTQVVQSKDFEKKGVAGNGARNGSCGDNSVFASCSFSSLGLHSSLCDQLRDRLGFEAPTLVQAQAIPVIL SGRHALVNAATGTGKTIAYLAPIIHYLQSYDNRIQRSDGTFALVLVPTRELCLQVYEILVKLLHRFHWIVPGYIMGGENR SKEKARLRKGISILIATPGRLLDHLKKTSSFVYTNLRWIIFDEADRILELGFGKDIEEILDLLGSTRTGCDDQENAVPGA SKTQRQNLLLSATLNEKVNHLAKISLENPVMIGLDDKSIEPISTTASLDHAEPDEDSEEKYSGKIPTVGDYKVPVQLIQR HVKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDFHYSLLKSFKFSSYPQIEEGDKQMFLGCKILHLHGNMEQE NRRTSFQAFKTENSALLLSTDVSARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARLGEKGESLLFLQPIEIDYLQDLEK HGVSLTEYPLLKVLDYFPLHGQSKHLKKSVFIDSHPWVLCLQKALESFITSKPKLDELAKRAFCSWVRAYTAYKGDLKKI FLIKKLHLGHVAKSFALKQQPSLVGKSFQKQIKKRKRYEKNNGLSNKRKVARVT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 274 | 274 | 8.1E-73 | – | |
| PANTHER | 36 | 597 | 562 | 6.4E-111 | – | |
| PANTHER | 36 | 597 | 562 | 6.4E-111 | – | |
| ProSiteProfiles | 44 | 73 | 30 | 9.833 | ||
| CDD | 55 | 273 | 219 | 2.17637E-114 | – | |
| SMART | 64 | 291 | 228 | 4.8E-51 | ||
| Pfam | 70 | 260 | 191 | 9.2E-41 | ||
| ProSiteProfiles | 76 | 272 | 197 | 30.069 | ||
| SUPERFAMILY | 119 | 479 | 361 | 9.23E-59 | ||
| ProSitePatterns | 200 | 208 | 9 | - | ||
| CDD | 317 | 467 | 151 | 3.71436E-42 | – | |
| Gene3D | 327 | 610 | 284 | 1.8E-46 | – | |
| ProSiteProfiles | 332 | 505 | 174 | 17.764 | ||
| Pfam | 335 | 458 | 124 | 9.6E-25 | ||
| SMART | 375 | 458 | 84 | 9.6E-24 | ||
| SMART | 520 | 585 | 66 | 9.1E-21 | ||
| Pfam | 522 | 582 | 61 | 1.5E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi6g1v0221900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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