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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0231300 |
| Transcript ID | LotjaGi6g1v0231300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q9LTS3|CKX3_ARATH Cytokinin dehydrogenase 3; TrEMBL-Plants: tr|A0A0U2UQP8|A0A0U2UQP8_LOTJA Cytokinin oxidase/dehydrogenase 4; Found in the gene: LotjaGi6g1v0231300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54003397..54007681) extracted from Lotus japonicus Gifu genome v1.2.
GAGAGAAGCTATATATAATAGACACCAATTCTAAGCAAAAACACATTACCAACTTTACGCCTCTCTATCGTTCCCACAAA CAATGGCAAGGAGGAATGCCATGCTCTTGGCCCTGCTATTTCTATCATGCGCAGTGCTCACACAGGGCCAACAAATACGC CCCTTAACATCATTCCAATCAGACCCTAAAACCCTTTCAGAAGCCTCAACTGATTTCGGTCACATAGTTCACAAAACCCC TACACTAGTTTTGGAGCCGTCTTCGGTCAGCGACATCTCTGACCTCATAAAGCAATCAAACTCTCGTGCCACCCCCTTCA CCATCGCCGCGAGGGGGCATGCCCACTCGTATCTCGGGCAAGCCATGGCTGAGGGTGGGGTCGTGGTAAACATGACCGAG CTCAACCGGTTCAGAAACGGGTCAGGGATTGTTATAACATGTGGTGGTGGTGGTGGTGGCGGTAGTGGAGGTAATTGTTA TGCGGATGTTGGGGGTGAGCAGTTATGGATTGATGTGTTGCATGCATGCCTTCAACGTGGTCTCTCGCCGCTCGCTTGGA CTGATTACTTGTATTTGACAGTTGGTGGTACGCTGTCTAACGCTGGGATCAGTGGCCAAGCCTTTCGATTTGGACCTCAG ATCTCTAATGTCCTTGAAATGGACGTTGTTACCGGTACGTAACTTCAATTCATTCCTTTTTTCTTCGCCCTGACGCAAGC CACGCACATATCAATTGTTTAGTATTTTAATTTTCCCCAGCGCAATTGTATTTTTTTTTTGGTTTTGCAATTGTATTTTT GATTGAAGATAGTTTTTATTCCTTTTCTGTTATATATGAACAAAAATTTTGTGAGAAAGAAGTCCGACAAAAGTTATATA TACTGAGAATTTTGTGTTTGCAATGGAAATATTGCCAAATTTACAGAATCAAACATAACCTTAATTTTTGTAAATATTAA ATCATTTTAGATTTGGTGGAGGGAAATAAATTAAAATCTTTTTTCAATTTTAATATATTCGAATGTAATATTTTTGAAGT CAATTATGACACTAAAGGTTAAATGGGTATAAAATACACAAAAATATTTTCTATTCAAGAACAATTATAAGTAACATTTA ATGATGCATTATAGGTTTCAATATTTTTTAATGATATATTGTAGAGTTAGCTCATAATTAATTTTAAATTTAATAATACT TAAAATAGAAAATGGAAGGATGTGATTGAATTAATGACGGTAAAACTTTTTACATCATCAGAGCATTGGAATTAATCTCT TAATAATATGAACTGATAATGTCATTTTTTACATGAACAACGAATTAAATAAAATTTACTATTGTACCACATCATAGATA AATGTAAATAGAAAATACAAAAAGAAAAGAAACACGACAATAATATATACGTAATCAGATATTTGTGTATTTTTTTACAC TATTAGTGCATATGAAGATATATTCCTTCTTTAAAAAAAAAACTGATATATTTCTAAAAAAATTCCCCTAACTCTCTCAA CCAAGATTTAGGGTTTGACTGGGTAGCTGCAGTGTCGCCTCCTTGCACGCGGCAACATCCTCTCGTTTCTCTATCCACTT TCCTTGTGCTTTTTCAAGGGTGTGGCAACAAGGGGATCATCAACTTTGCTTTCTGGTCTGTCTCTCCTCAAATACATTTC TGAGGTTTTAAAAAACTCTGAAGTTTCACACATCACAAACAATATTCTACCAACAAGAATGTTTATAATTTATTTGATTC ACATTAGTGTCAATCTCTCTATTTTTTTTCATCTAAATGAGTAAATACAATTTAAATGTGGCTTTTTACAGGGAAAGGAG ACCTTGTTACTTGTTCTGCCAACATGAACTCAGAGACATATTATGCCGTTCTTGGGGGATTAGGTCAATTTGGGGTGATA ACAAGAGCAAGAATACTTCTAGGACCTGCACACACCAGGGTTAAGTTAAATTTCATTGAATTTTATTTTTTTGTGTACAC ATTCTTGTAAAGTGAACCCCTGCAAATTCATCACCAACATTTAAGAGGTCAACAAAATTGTCATAAATTTAACACAATAG TAATAGGAGTTTCAATTAAAACAATCTCATATTTTAGCTAAATTAGCTAGCTCACTTAAGCTGTACGTGAGTCAAAATGA GTTCAAGCAAGACACTACGACGTGAAGGCTAAATAACTTGTAAACACAAGTTTGATATCAATTGATCTTTGTTTAATTGC TTGCAGGCAAAATGGCTCCGTTTGATTTACACCGATTTTTCCGCTTTTTCTGGAGATCAAGAACATTTGATCTCATTCAG TGGAAGTAGTGACACTAATGCATTTGATTATGTAGAAGGCATGCTTCTCCTGAATCAGCAGCCACTTGACCTTTCCTTTT TTCCAACACCAGATCAGCCTAGGATAACTTCCTTGGTATCTCAATACGGCATCACCTACGTCCTTGAACTAGTCAAATAT TATGACAACAATTCTGAAGCACACATTAATGAGGTAATTAACTTCAAACATATATTGTTTAACTTATCTATGAAACAATG TTAATCTTAATTAGTTAATCATATGCTTGTATAATTTCTTAAATAGGAAGTTGCAAATCTGGTCAAAGGTTTGAAGTTTG TTCCTAATTTTATGTTCAAAAAAGATGTGTCGTACGAGGAGTTTCTCAACAGAGTTCATGAAGATGAGCTAGCTCTTAGG TCAAAAGGACTTTGGGATCTTCCTCATCCTTGGTTGAACATGTTCATTCCAAGGTCCAGAATTTCAGATTTCAATGAAGG TGTGTTCAAGGGCATTATTCTAAAGCAAAATCTTACCGCCGGAATCGTACTAGTCTACCCGATGAACCGAAATAAGTAAG TTTACTTTATGTTATGTATTTGAAAAGTATCAATTAATACACAAAAATAAAATATATTTTTGATCAACATTATGCTTAAT TTGATATGATTCACAGGTGGGATGATAGGATGTCAGTAGTTACACCTGATGAAGATGTCTTCTACACTGTAGGTCTTTTG CAAACTGCTGCAAATGGGGGTGATGAGGTGCAGAAATATCAGGCTCAAAACCAAGAGATACTGCAGTTTTGTAAAGGTGC AGGCATTAAGATCAAGGAATATCTCACTGGTAACAAAACACATGAAGAATGGGTGGAACACTTTGGCCCCAAATGGAAAC TTTGGGAAGATAGAAAAGCTGAATTTGATCCCAAAAGAATCTTGTCACCTGGACAAGGGATTTTCTAATAAATAGCTAGC ATCTAGATAGGAACGAATTGGATTAGGAGGGATTTTCTAATAAATAGCTAGCATCTTGCTAGGAATAAATTGGATTAGGA GTTACCGTTTGAACCAACTTTTTTATGTCTTAAAAGTTACTTTAAAGTTTAATATAAAAGTTTTAAGAAAATAGTAAATG TTGTTTGTCAATTTTTATTTTTTATAGCTTGACGACTACTTTTAATTTAATAGAGCTTTGTCGCTATTTAAATCCATGAC TTTGGGTGGTTGCCATGACACGATGGTGGACAGGTCAAGTAATAGTGATGGTGGAGGTCGGTGGTACCTAGTGATGCTGG CAGCGGTGGAGGTGGTTGTTACTGGTGGCGGGGTGGTGATGGTGGAGGTTGGAAGCAGTGGTGGTGGTCCTTGTAGCGGC CGTGTTGGAGGTAGTGAAAGTGGAAGTGGAGGTGGGTGGCAGCGACAACAGTAATGGTGGCGATGGAGCTAGTGGTGTTG GCATAGGTGTGTTACCTGATGGTGACAATGGTCGAGCTAGTGGTAGCAACAGTGTGGGAGAGGGTGGTGGTGGTAGTGGT AGTGGTGATGGTAGATGTGGTGGTGGCAGCGGCAGTGGTACTGGTGGAGGGTGGAGGTGGCGGTAGAGAAAATGACATCG GTGAGGGTGGTGGTGACAATGGCCGTGGTGGCGGGTTGCGCAATGGTGGAGGGTGGTGGTGACAACGCTATGGTCGTGGT GGTGATGGAAGGCGGTGGTGGCGATGATGGTGGAGATGGTGGTAATGGTACGTGGAAGCAGTGTTTTAAAACTCGGCTCG GTCGATGTACTGAGTTAACGAGTCATTGGTCGAACCAGTGAGTCACTGGTCGGATTGCTTGACTCGGTGCATATTAAATT TTTTAAAATTTAAAATACTAATTAACATTAATTAATTAATTTATACTCCAAAAAACATATATTCATATTATATCAAAAAT ACATTCCAAAATATCAGTTTTTTTTAACAACTACTATCTAAAAAC
CDS sequence (LotjaGi6g1v0231300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGGAGGAATGCCATGCTCTTGGCCCTGCTATTTCTATCATGCGCAGTGCTCACACAGGGCCAACAAATACGCCC CTTAACATCATTCCAATCAGACCCTAAAACCCTTTCAGAAGCCTCAACTGATTTCGGTCACATAGTTCACAAAACCCCTA CACTAGTTTTGGAGCCGTCTTCGGTCAGCGACATCTCTGACCTCATAAAGCAATCAAACTCTCGTGCCACCCCCTTCACC ATCGCCGCGAGGGGGCATGCCCACTCGTATCTCGGGCAAGCCATGGCTGAGGGTGGGGTCGTGGTAAACATGACCGAGCT CAACCGGTTCAGAAACGGGTCAGGGATTGTTATAACATGTGGTGGTGGTGGTGGTGGCGGTAGTGGAGGTAATTGTTATG CGGATGTTGGGGGTGAGCAGTTATGGATTGATGTGTTGCATGCATGCCTTCAACGTGGTCTCTCGCCGCTCGCTTGGACT GATTACTTGTATTTGACAGTTGGTGGTACGCTGTCTAACGCTGGGATCAGTGGCCAAGCCTTTCGATTTGGACCTCAGAT CTCTAATGTCCTTGAAATGGACGTTGTTACCGGGAAAGGAGACCTTGTTACTTGTTCTGCCAACATGAACTCAGAGACAT ATTATGCCGTTCTTGGGGGATTAGGTCAATTTGGGGTGATAACAAGAGCAAGAATACTTCTAGGACCTGCACACACCAGG GCAAAATGGCTCCGTTTGATTTACACCGATTTTTCCGCTTTTTCTGGAGATCAAGAACATTTGATCTCATTCAGTGGAAG TAGTGACACTAATGCATTTGATTATGTAGAAGGCATGCTTCTCCTGAATCAGCAGCCACTTGACCTTTCCTTTTTTCCAA CACCAGATCAGCCTAGGATAACTTCCTTGGTATCTCAATACGGCATCACCTACGTCCTTGAACTAGTCAAATATTATGAC AACAATTCTGAAGCACACATTAATGAGGAAGTTGCAAATCTGGTCAAAGGTTTGAAGTTTGTTCCTAATTTTATGTTCAA AAAAGATGTGTCGTACGAGGAGTTTCTCAACAGAGTTCATGAAGATGAGCTAGCTCTTAGGTCAAAAGGACTTTGGGATC TTCCTCATCCTTGGTTGAACATGTTCATTCCAAGGTCCAGAATTTCAGATTTCAATGAAGGTGTGTTCAAGGGCATTATT CTAAAGCAAAATCTTACCGCCGGAATCGTACTAGTCTACCCGATGAACCGAAATAAGTGGGATGATAGGATGTCAGTAGT TACACCTGATGAAGATGTCTTCTACACTGTAGGTCTTTTGCAAACTGCTGCAAATGGGGGTGATGAGGTGCAGAAATATC AGGCTCAAAACCAAGAGATACTGCAGTTTTGTAAAGGTGCAGGCATTAAGATCAAGGAATATCTCACTGGTAACAAAACA CATGAAGAATGGGTGGAACACTTTGGCCCCAAATGGAAACTTTGGGAAGATAGAAAAGCTGAATTTGATCCCAAAAGAAT CTTGTCACCTGGACAAGGGATTTTCTAA
Protein sequence (LotjaGi6g1v0231300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARRNAMLLALLFLSCAVLTQGQQIRPLTSFQSDPKTLSEASTDFGHIVHKTPTLVLEPSSVSDISDLIKQSNSRATPFT IAARGHAHSYLGQAMAEGGVVVNMTELNRFRNGSGIVITCGGGGGGGSGGNCYADVGGEQLWIDVLHACLQRGLSPLAWT DYLYLTVGGTLSNAGISGQAFRFGPQISNVLEMDVVTGKGDLVTCSANMNSETYYAVLGGLGQFGVITRARILLGPAHTR AKWLRLIYTDFSAFSGDQEHLISFSGSSDTNAFDYVEGMLLLNQQPLDLSFFPTPDQPRITSLVSQYGITYVLELVKYYD NNSEAHINEEVANLVKGLKFVPNFMFKKDVSYEEFLNRVHEDELALRSKGLWDLPHPWLNMFIPRSRISDFNEGVFKGII LKQNLTAGIVLVYPMNRNKWDDRMSVVTPDEDVFYTVGLLQTAANGGDEVQKYQAQNQEILQFCKGAGIKIKEYLTGNKT HEEWVEHFGPKWKLWEDRKAEFDPKRILSPGQGIF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 515 | 515 | 6.0E-261 | – | |
| PANTHER | 1 | 515 | 515 | 6.0E-261 | – | |
| ProSiteProfiles | 1 | 16 | 16 | 6.0 | – | |
| SignalP_GRAM_NEGATIVE | 1 | 20 | 20 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| Phobius | 8 | 18 | 11 | - | – | |
| Phobius | 19 | 22 | 4 | - | – | |
| Phobius | 23 | 515 | 493 | - | – | |
| SUPERFAMILY | 33 | 236 | 204 | 2.24E-37 | ||
| Gene3D | 41 | 515 | 475 | 1.3E-195 | ||
| ProSiteProfiles | 49 | 237 | 189 | 14.589 | ||
| Pfam | 53 | 206 | 154 | 1.2E-16 | ||
| Gene3D | 104 | 239 | 136 | 1.3E-195 | ||
| Pfam | 239 | 515 | 277 | 3.7E-110 | ||
| SUPERFAMILY | 240 | 515 | 276 | 6.98E-85 | ||
| Gene3D | 241 | 475 | 235 | 1.3E-195 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Cytokinin metabolic process | The chemical reactions and pathways involving cytokinins, a class of adenine-derived compounds that can function in plants as growth regulators. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Cytokinin dehydrogenase activity | Catalysis of the reaction: N6-dimethylallyladenine + acceptor + H2O = adenine + 3-methylbut-2-enal + reduced electron acceptor. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. | ||
| Molecular function | FAD binding | Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. |
Expression pattern of LotjaGi6g1v0231300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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