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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0240700 |
| Transcript ID | LotjaGi6g1v0240700.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lysine--tRNA ligase; TAIR: AT3G11710.1 lysyl-tRNA synthetase 1; Swiss-Prot: sp|Q9ZPI1|SYKC_ARATH Lysine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1LZI3|I1LZI3_SOYBN Lysine--tRNA ligase; Found in the gene: LotjaGi6g1v0240700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55232813..55237671) extracted from Lotus japonicus Gifu genome v1.2.
TTAACTGAATTTGATTTTCTAGGCTGCTGAAATGCAAAGTGCTAAGGATAACAAATCTGCACCTGTTGATGAAGATGATA TGGACCCAACGGTATAGCTCCGCTTTTCGCTAATACATTTTTTTTTTCCATTTCAGCTATATTTGTTGAACTTTTTCATT TGTGAAAATTGTTTCTTTACTTTTGGGTGTTTTTTTCGCTGCAGCAATACTTTGAGAATAGGATAAAGTATCTTGCAGGT CAGAAAGGAGAAGGGAATAACCCGTATCCGCACAAGTTCTTTGTCACTATGTCTGTTGCTGAATACATTAAGGAGTATGA AGGTTTAAGCAATGGGCAACACCTTGAGGACGTCTCTGTGTCTTTGGCTGGTAGGCAGCAGATTCTTTGTTGATGTTATT TCTTCCCCTTATGGTGGTTGGTTTGTGCTTATGTTGGTTTTAATAATGGTCTTTCTGCATTTCAGGCCGAATCATGCACA AGCGCGCATCTGGTGCAAAGCTTGTCTTTTATGATCTGCACGGTGGTGGTTTCAAGGTTCAGGTTATGGCCGATGCAAGG TACCCTGTGTTATCTTCTATTTTGCACATGTAGAGATGATGGTGATCCAAAACAATTTATATAGATTTTTTATCTTTTAA GCTAAGTGACTAATTTGCGTAATTTAGAAGCTAGTTTGTCGTTTGGTTCAAAAGCTAGTTTTACCAATTACCAAACACTT TAATCGAATCAGTTATAGTTCTTCAGCTTCCACTAGCTTCTAAGCTATCAGCTTCTAGCTTATTAGCTAGTTTTGTTAAT CATAGCCTTTATAACGCATCTTATTGAAGTTTGGTGTCTGGTCATATAATAATCTTCTTTTATTGTCTAAAATATCTTAT TGAAGTCTGGTGTCTGGTCATACAATAATCTTCTTTTATCATCGTTGTGATAATTTGCCCTATCCTTTTGGGTCTTCTAT AATTTTTACACACGAATCATAAGCTAATTTGTTATATGGGTAAGTCTCTTAATCTATTACTATTGATTTTGCACACTTCT CTGCATACTAATTTGCTTAGGTGCTAATGGGTCAGAGTTATAAAAATATATATTAAATGGCAAGAATTCAAGTATGGAAA AATGTAAATTTAAGAGATTACATTGGAATATCATGTTATGAAGTATTCCTTATTACGTGGCGTTTGACTAGCTTAGATGT AGCTCTTTGGATCTTCAACTTGTGAAGTTGTTTTTAGTGTTTTAGTCTTTCTTAATGGTGTCCTTTTCCTTATTATAGAT CCAATGATTTCTTTTTTTTTTTCTTTTTATCCTGTTTAATTAAGTAGGACCTAAACAAATGATATCTGTGCAATGCAGTA AATCGGACTTGAATGAAGCTGAGTTTTCCAAGTTCCATTCTAATGTGAAGCGTGGTGACATTGTTGGCATCACTGGGTTT CCAGGTTTGGATGCTACAAACTTTCTGCGTTCTAATATTTTGTTTCACTTTGTCATTCTTGCATAATGCGTATATGTTTG TTTCTTATTCCATGACTGGCAGAGTAATAGTAACTACTTGCAATAAGGATAATAAGTTTTTTTTTTAAATTAAATGAATT AAGCCTTGTTAAGTAGGAAAAAGTTAATTATTAATTGCGTATTATTAGACAATTCTATCTTTAGACTAGGAACCCGTTTA AGCTCAAGAGTCAAAATCACTTTAAAACTGTTAGTTAGCTGTCAACATTTTGAAAGCCATATCTATTGTACTTGTATTCA TTAAGGGCTAAGTCCTACTTATTTCTGCTTTGTTGCTCCATAGGATGCATTCTACAGTAATATATTCCGAATATAAATTT TTTCACCCTACATACAGCAGTTTTATCAGTTTTCACTTGTTTCATCGTCCAGGCAAAAGCAAGAAGGGAGAGCTTAGTAT ATTCCCTAAGACTTTTGTGGTACTGTCTCACTGTCTGCATATGATGCCGAGGCAAAAATCCGCAGCTGCTGCTGATAATG CAAATTTGAAGGTCAGAACAATTCCTTCATGTTTTGATGATGTTTGATGACCACATACAATGACATTTTTACTTTAATGA TCTGCAGAAAAATCTGTGGGTACCAGGAAATACCAGGAATCCTGAAACCTACATTTTGAAAGATCAGGTATTATTCGCAT AAAATCTCATTAATTTTAGTCATTTATAAACTTTTGTCCCACGTACTGTCTCACGTTCTTTGGACCATTTTTAGAAGGGT GATACTGAGGTGGATTCACTTGTATAATTGAGAAAATGTTCACTTGTTTAAGGGCACAGTTAATTACTATTGAAACTAGC ATCTTTATTTTTATGTTCCATCCTCTATTTTTTCATGTATTGAAAGATATAATGGAATTTTCACTAGTATTTTCTGCTTG CTATAATTAAACATACTTTGATAACTTCTATCTGTAGAAGCTGAACGGTTTTTTTCCCTTTTGCATTATCCCCTGTTTGC TTCACTTTTCTATCAAAATATAGTTTTTTGTTCTGAATTCTGACAAATTGGCTTATTCAATTAATTATCTTATTTTTTGT TTATAGGAAACAAGATACCGATTACGCCATTTGGATTTGATGCTTAATCCAGAGGTTCGAGAAATATTCAAGACTAGGTC CAAAATCATTTCTTACATTAGGAGGTTCCTTGATGACCTTGATTTCTTGGAGGTTTGTTCTCTGTCTGAGTATTCGGATG ATGGATGCCTGTGATTTCTTTCCTTCCATTTACCTACTTTTTCCTCCACCCAGGTTGAAACACCTATGATGAACATGATT GCTGGTGGAGCTGCAGCCCGTCCATTTGTAACACATCACAATGATCTTAATATGAGGTTATTCATGAGAATTGCTCCAGA ACTCTATCTTAAGGAGTTGGTTGTTGGTGGGCTGGACCGTGTTTATGAAATTGGTAAACAATTTAGGAATGAGGGCATTG ATTTGACTCATAATCCTGAGTTTACTACCTGTGAGTTCTATATGGCATATATGGACTACAACGACTTAATGGAACTAACT GAGCAATTGTTGAGTGGTGAGAATTTACTCCGTCTTTTGATTGTCATCTTGATTCTCTGTCGTATATCTTATCTTCAAGT CACCTGCTTTTTCTCATGATGTGGAAAAATAGGTATGGTTAAGGAGCTTACAAAAGGCAGCTATAAAATCAAGTATCATG CAGATGGGATTGATAAGGATCCTATTGAAATCGATTTTACTCCACCTTTCAGGTCTGTGGTGTACATTTTCTTGTCACTG ATTGTCATGATAATTCTATTCTACTTTGAATGAGCAATTTGGGGTTTTTATTGTTACAGAAGGATTGACATGATTGAAGA TTTAGAGAAGATGGCAGGCCTCAATATTCCCAAAGACTTGTCAAGTGAGGAAGCTAACCAATATCTGAGGGATGCTTGCT TGAAGCATGAGATCAAATGCCCTCCTCCCGAAACAACTGCTCGTTTGTTGGATAAAGTAATCTCCTTTCTCCCCCTTCTG AGTATAATCTTTTTTAATTTTTTACTTTCATTTAAAAGTTGGTACATGGTTGTACTTTCTTTTGCCTTGATGGAATGGAG CAATTTTTTTATGGCACTATTTATCAATTGTATTTTCTATCTCATACTTATTGTGGAGTGTCAGCCTGTCGGGTATGATT TGAAGATGATAAGGCTTTGGATGTTGGATAAAAAAAGTTGTTTGTGTTACACCTGGGAGAATGAAATAGATATGAAATAG GTGGAGGGCATAGGACTACAAACATTCTAGTCTTATTTAAGAAAACACTTGACCGTTTTAGGAATATAACTGTTATTTCC AGTAATTATATACGCTATACCAAAGACTTGTCTGGTGAAATGTAATTTATTTTCTGTAAGGATAAGGATAATGTGGCTGC AGTTTTAGTGAAAGCTTGGATACCACTCTGGTCTACTATTTTTTTCCCTTGTTTATACATTCTACGTGTCCTTTCTCCTT TCTTACTTATTTTTAATGAGTTCAGTTTTACATGCACGCAATTATAATTGCTGCACCTCATGCACGTATCTTTATTCCTT CTTCTTTTGAGCCTCCGTACGAGGTCTCTGCAGAATATGTGATTGTGACTTTTTCCTATTGCAGCTTGTGGGGCACTTTT TGGAAGAAACGTGTGTGAATCCTACATTCATCATAAACCATCCTGAGATAATGAGTCCATTGGCAAAGTGGCACAGATCA AAACCAGGCCAGACTGAACGTTTTGAATTGTTTGTTAATAAACATGAAGTAAGACAATTACATTTAGGTGATTCTTATTA AAAAAATATGGATTCATGCTTGAGTTTTAGTTACTGTTTCTGTTACTTTTCAGGTTTGCAATGCATATACGGAATTGAAC GACCCTGTGGTGCAACGACAGAGATTTGCTGAACAACTAAAGGTGATGAGATGTGATAGACAGTAATATTTACTAAAATG ATAATGCTTAAATGGTTGACCACATTTTCTTCAAATTAATAAGAGTACTAATTGTTATTTGTTTACATCTCAGGACCGGC AATCAGGTGATGATGAGGCAATGGCCTTAGATGAAACATTTTGTACTGCTTTGGAGTATGGTTTGCCACCAACAGCTGGT TGGGGTTTGGGTATTGATAGGTTGACCATGATATTCACTGATTCACAGAATATTAAGGTTCTTGCTCTCTCTCTCTCTCT CTCACTATATATGTACTGTTTATGTTGGAAATTTCTTACAATCTTCTTCCTTTTGGTGACAGGAGGTTCTACTTTTCCCT GCCATGAAGCCTCAAGATTGAGCCTTCTTTTCAAGCTTTCTTTAAATCTATCCCAGTAA
CDS sequence (LotjaGi6g1v0240700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAAGTGCTAAGGATAACAAATCTGCACCTGTTGATGAAGATGATATGGACCCAACGCAATACTTTGAGAATAGGAT AAAGTATCTTGCAGGTCAGAAAGGAGAAGGGAATAACCCGTATCCGCACAAGTTCTTTGTCACTATGTCTGTTGCTGAAT ACATTAAGGAGTATGAAGGTTTAAGCAATGGGCAACACCTTGAGGACGTCTCTGTGTCTTTGGCTGGCCGAATCATGCAC AAGCGCGCATCTGGTGCAAAGCTTGTCTTTTATGATCTGCACGGTGGTGGTTTCAAGGTTCAGGTTATGGCCGATGCAAG TAAATCGGACTTGAATGAAGCTGAGTTTTCCAAGTTCCATTCTAATGTGAAGCGTGGTGACATTGTTGGCATCACTGGGT TTCCAGGCAAAAGCAAGAAGGGAGAGCTTAGTATATTCCCTAAGACTTTTGTGGTACTGTCTCACTGTCTGCATATGATG CCGAGGCAAAAATCCGCAGCTGCTGCTGATAATAAAAATCTGTGGGTACCAGGAAATACCAGGAATCCTGAAACCTACAT TTTGAAAGATCAGGAAACAAGATACCGATTACGCCATTTGGATTTGATGCTTAATCCAGAGGTTCGAGAAATATTCAAGA CTAGGTCCAAAATCATTTCTTACATTAGGAGGTTCCTTGATGACCTTGATTTCTTGGAGGTTGAAACACCTATGATGAAC ATGATTGCTGGTGGAGCTGCAGCCCGTCCATTTGTAACACATCACAATGATCTTAATATGAGGTTATTCATGAGAATTGC TCCAGAACTCTATCTTAAGGAGTTGGTTGTTGGTGGGCTGGACCGTGTTTATGAAATTGGTAAACAATTTAGGAATGAGG GCATTGATTTGACTCATAATCCTGAGTTTACTACCTGTGAGTTCTATATGGCATATATGGACTACAACGACTTAATGGAA CTAACTGAGCAATTGTTGAGTGGTATGGTTAAGGAGCTTACAAAAGGCAGCTATAAAATCAAGTATCATGCAGATGGGAT TGATAAGGATCCTATTGAAATCGATTTTACTCCACCTTTCAGAAGGATTGACATGATTGAAGATTTAGAGAAGATGGCAG GCCTCAATATTCCCAAAGACTTGTCAAGTGAGGAAGCTAACCAATATCTGAGGGATGCTTGCTTGAAGCATGAGATCAAA TGCCCTCCTCCCGAAACAACTGCTCGTTTGTTGGATAAACTTGTGGGGCACTTTTTGGAAGAAACGTGTGTGAATCCTAC ATTCATCATAAACCATCCTGAGATAATGAGTCCATTGGCAAAGTGGCACAGATCAAAACCAGGCCAGACTGAACGTTTTG AATTGTTTGTTAATAAACATGAAGTTTGCAATGCATATACGGAATTGAACGACCCTGTGGTGCAACGACAGAGATTTGCT GAACAACTAAAGGACCGGCAATCAGGTGATGATGAGGCAATGGCCTTAGATGAAACATTTTGTACTGCTTTGGAGTATGG TTTGCCACCAACAGCTGGTTGGGGTTTGGGTATTGATAGGTTGACCATGATATTCACTGATTCACAGAATATTAAGGAGG TTCTACTTTTCCCTGCCATGAAGCCTCAAGATTGA
Protein sequence (LotjaGi6g1v0240700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSAKDNKSAPVDEDDMDPTQYFENRIKYLAGQKGEGNNPYPHKFFVTMSVAEYIKEYEGLSNGQHLEDVSVSLAGRIMH KRASGAKLVFYDLHGGGFKVQVMADASKSDLNEAEFSKFHSNVKRGDIVGITGFPGKSKKGELSIFPKTFVVLSHCLHMM PRQKSAAAADNKNLWVPGNTRNPETYILKDQETRYRLRHLDLMLNPEVREIFKTRSKIISYIRRFLDDLDFLEVETPMMN MIAGGAAARPFVTHHNDLNMRLFMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYMDYNDLME LTEQLLSGMVKELTKGSYKIKYHADGIDKDPIEIDFTPPFRRIDMIEDLEKMAGLNIPKDLSSEEANQYLRDACLKHEIK CPPPETTARLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRSKPGQTERFELFVNKHEVCNAYTELNDPVVQRQRFA EQLKDRQSGDDEAMALDETFCTALEYGLPPTAGWGLGIDRLTMIFTDSQNIKEVLLFPAMKPQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 544 | 544 | 1.5E-262 | ||
| PANTHER | 4 | 544 | 541 | 0.0 | – | |
| PANTHER | 4 | 544 | 541 | 0.0 | – | |
| SUPERFAMILY | 17 | 161 | 145 | 4.9E-36 | ||
| TIGRFAM | 19 | 543 | 525 | 2.4E-178 | ||
| Gene3D | 20 | 162 | 143 | 2.5E-48 | – | |
| Hamap | 25 | 543 | 519 | 37.541 | ||
| CDD | 71 | 202 | 132 | 2.9556E-46 | – | |
| Pfam | 72 | 149 | 78 | 8.6E-13 | ||
| Gene3D | 186 | 544 | 359 | 2.3E-143 | – | |
| Pfam | 190 | 540 | 351 | 6.0E-83 | ||
| SUPERFAMILY | 190 | 541 | 352 | 5.36E-119 | – | |
| CDD | 205 | 542 | 338 | 0.0 | ||
| ProSiteProfiles | 212 | 542 | 331 | 26.472 | ||
| PRINTS | 227 | 237 | 11 | 1.7E-37 | ||
| PRINTS | 243 | 259 | 17 | 1.7E-37 | ||
| PRINTS | 272 | 285 | 14 | 1.7E-37 | ||
| PRINTS | 290 | 307 | 18 | 1.7E-37 | ||
| PRINTS | 425 | 441 | 17 | 1.7E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Lysine-tRNA ligase activity | Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Lysyl-tRNA aminoacylation | The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. The lysyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a lysine-accetping tRNA. |
Expression pattern of LotjaGi6g1v0240700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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