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LotjaGi6g1v0240700.4

Overview

Field Value
Gene ID LotjaGi6g1v0240700
Transcript ID LotjaGi6g1v0240700.4
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Lysine--tRNA ligase; TAIR: AT3G11710.1 lysyl-tRNA synthetase 1; Swiss-Prot: sp|Q6F2U9|SYK_ORYSJ Lysine--tRNA ligase; TrEMBL-Plants: tr|I1LZI3|I1LZI3_SOYBN Lysine--tRNA ligase; Found in the gene: LotjaGi6g1v0240700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:55232827..55234985) extracted from Lotus japonicus Gifu genome v1.2.

TTGGAGGTTTGTTCTCTGTCTGAGTATTCGGATGATGGATGCCTGTGATTTCTTTCCTTCCATTTACCTACTTTTTCCTC CACCCAGGTTGAAACACCTATGATGAACATGATTGCTGGTGGAGCTGCAGCCCGTCCATTTGTAACACATCACAATGATC TTAATATGAGGTTATTCATGAGAATTGCTCCAGAACTCTATCTTAAGGAGTTGGTTGTTGGTGGGCTGGACCGTGTTTAT GAAATTGGTAAACAATTTAGGAATGAGGGCATTGATTTGACTCATAATCCTGAGTTTACTACCTGTGAGTTCTATATGGC ATATATGGACTACAACGACTTAATGGAACTAACTGAGCAATTGTTGAGTGGTGAGAATTTACTCCGTCTTTTGATTGTCA TCTTGATTCTCTGTCGTATATCTTATCTTCAAGTCACCTGCTTTTTCTCATGATGTGGAAAAATAGGTATGGTTAAGGAG CTTACAAAAGGCAGCTATAAAATCAAGTATCATGCAGATGGGATTGATAAGGATCCTATTGAAATCGATTTTACTCCACC TTTCAGGTCTGTGGTGTACATTTTCTTGTCACTGATTGTCATGATAATTCTATTCTACTTTGAATGAGCAATTTGGGGTT TTTATTGTTACAGAAGGATTGACATGATTGAAGATTTAGAGAAGATGGCAGGCCTCAATATTCCCAAAGACTTGTCAAGT GAGGAAGCTAACCAATATCTGAGGGATGCTTGCTTGAAGCATGAGATCAAATGCCCTCCTCCCGAAACAACTGCTCGTTT GTTGGATAAAGTAATCTCCTTTCTCCCCCTTCTGAGTATAATCTTTTTTAATTTTTTACTTTCATTTAAAAGTTGGTACA TGGTTGTACTTTCTTTTGCCTTGATGGAATGGAGCAATTTTTTTATGGCACTATTTATCAATTGTATTTTCTATCTCATA CTTATTGTGGAGTGTCAGCCTGTCGGGTATGATTTGAAGATGATAAGGCTTTGGATGTTGGATAAAAAAAGTTGTTTGTG TTACACCTGGGAGAATGAAATAGATATGAAATAGGTGGAGGGCATAGGACTACAAACATTCTAGTCTTATTTAAGAAAAC ACTTGACCGTTTTAGGAATATAACTGTTATTTCCAGTAATTATATACGCTATACCAAAGACTTGTCTGGTGAAATGTAAT TTATTTTCTGTAAGGATAAGGATAATGTGGCTGCAGTTTTAGTGAAAGCTTGGATACCACTCTGGTCTACTATTTTTTTC CCTTGTTTATACATTCTACGTGTCCTTTCTCCTTTCTTACTTATTTTTAATGAGTTCAGTTTTACATGCACGCAATTATA ATTGCTGCACCTCATGCACGTATCTTTATTCCTTCTTCTTTTGAGCCTCCGTACGAGGTCTCTGCAGAATATGTGATTGT GACTTTTTCCTATTGCAGCTTGTGGGGCACTTTTTGGAAGAAACGTGTGTGAATCCTACATTCATCATAAACCATCCTGA GATAATGAGTCCATTGGCAAAGTGGCACAGATCAAAACCAGGCCAGACTGAACGTTTTGAATTGTTTGTTAATAAACATG AAGTAAGACAATTACATTTAGGTGATTCTTATTAAAAAAATATGGATTCATGCTTGAGTTTTAGTTACTGTTTCTGTTAC TTTTCAGGTTTGCAATGCATATACGGAATTGAACGACCCTGTGGTGCAACGACAGAGATTTGCTGAACAACTAAAGGTGA TGAGATGTGATAGACAGTAATATTTACTAAAATGATAATGCTTAAATGGTTGACCACATTTTCTTCAAATTAATAAGAGT ACTAATTGTTATTTGTTTACATCTCAGGACCGGCAATCAGGTGATGATGAGGCAATGGCCTTAGATGAAACATTTTGTAC TGCTTTGGAGTATGGTTTGCCACCAACAGCTGGTTGGGGTTTGGGTATTGATAGGTTGACCATGATATTCACTGATTCAC AGAATATTAAGGTTCTTGCTCTCTCTCTCTCTCTCTCACTATATATGTACTGTTTATGTTGGAAATTTCTTACAATCTTC TTCCTTTTGGTGACAGGAGGTTCTACTTTTCCCTGCCATGAAGCCTCAAGATTGAGCCTTCTTTTCAAGCTTTCTTTAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0240700.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGAACATGATTGCTGGTGGAGCTGCAGCCCGTCCATTTGTAACACATCACAATGATCTTAATATGAGGTTATTCAT GAGAATTGCTCCAGAACTCTATCTTAAGGAGTTGGTTGTTGGTGGGCTGGACCGTGTTTATGAAATTGGTAAACAATTTA GGAATGAGGGCATTGATTTGACTCATAATCCTGAGTTTACTACCTGTGAGTTCTATATGGCATATATGGACTACAACGAC TTAATGGAACTAACTGAGCAATTGTTGAGTGGTATGGTTAAGGAGCTTACAAAAGGCAGCTATAAAATCAAGTATCATGC AGATGGGATTGATAAGGATCCTATTGAAATCGATTTTACTCCACCTTTCAGAAGGATTGACATGATTGAAGATTTAGAGA AGATGGCAGGCCTCAATATTCCCAAAGACTTGTCAAGTGAGGAAGCTAACCAATATCTGAGGGATGCTTGCTTGAAGCAT GAGATCAAATGCCCTCCTCCCGAAACAACTGCTCGTTTGTTGGATAAACTTGTGGGGCACTTTTTGGAAGAAACGTGTGT GAATCCTACATTCATCATAAACCATCCTGAGATAATGAGTCCATTGGCAAAGTGGCACAGATCAAAACCAGGCCAGACTG AACGTTTTGAATTGTTTGTTAATAAACATGAAGTTTGCAATGCATATACGGAATTGAACGACCCTGTGGTGCAACGACAG AGATTTGCTGAACAACTAAAGGACCGGCAATCAGGTGATGATGAGGCAATGGCCTTAGATGAAACATTTTGTACTGCTTT GGAGTATGGTTTGCCACCAACAGCTGGTTGGGGTTTGGGTATTGATAGGTTGACCATGATATTCACTGATTCACAGAATA TTAAGGAGGTTCTACTTTTCCCTGCCATGAAGCCTCAAGATTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0240700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMNMIAGGAAARPFVTHHNDLNMRLFMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYMDYND LMELTEQLLSGMVKELTKGSYKIKYHADGIDKDPIEIDFTPPFRRIDMIEDLEKMAGLNIPKDLSSEEANQYLRDACLKH EIKCPPPETTARLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRSKPGQTERFELFVNKHEVCNAYTELNDPVVQRQ RFAEQLKDRQSGDDEAMALDETFCTALEYGLPPTAGWGLGIDRLTMIFTDSQNIKEVLLFPAMKPQD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF55681
1 304 304 1.4E-97 –
ProSiteProfiles
PS50862
1 305 305 20.734
IPR006195
PANTHER
PTHR42918
1 307 307 1.0E-201 –
Gene3D
G3DSA:3.30.930.10
1 307 307 2.9E-119 –
PANTHER
PTHR42918:SF3
1 307 307 1.0E-201 –
CDD
cd00775
1 305 305 0.0
IPR018149
Pfam
PF00152
5 303 299 3.0E-66
IPR004364
PRINTS
PR00982
6 22 17 9.6E-34
IPR018149
PRINTS
PR00982
35 48 14 9.6E-34
IPR018149
PRINTS
PR00982
53 70 18 9.6E-34
IPR018149
PRINTS
PR00982
188 204 17 9.6E-34
IPR018149

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000166
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Subterm of
GO:0004812
Molecular function Aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
Subterm of
GO:0004824
Molecular function Lysine-tRNA ligase activity Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006418
Biological process TRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis.
Subterm of
Part of
GO:0006430
Biological process Lysyl-tRNA aminoacylation The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. The lysyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a lysine-accetping tRNA.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0240700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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