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LotjaGi6g1v0243100.3

Overview

Field Value
Gene ID LotjaGi6g1v0243100
Transcript ID LotjaGi6g1v0243100.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Copper-transporting ATPase; TAIR: AT5G44790.1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1); Swiss-Prot: sp|Q9S7J8|HMA7_ARATH Copper-transporting ATPase RAN1; TrEMBL-Plants: tr|A0A151T5L3|A0A151T5L3_CAJCA Copper-transporting ATPase RAN1; Found in the gene: LotjaGi6g1v0243100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:55562413..55568201) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCTCCCGCCGGCAAAGACCTGCAGCTCACTCCCCTCACCGCCGGCCGGACCACCACCGCCGATGACTCCGATTCCGA CGACCTAGAGGACGTGCGCCTCCTTGACTCCTACGACCGAAACGATGCCACGATGCGGCGAATTCAGGTCAGAGTCTCCG GCATGACATGCGCCGCTTGCTCCACTTCCGTTGAGTCGGCTCTGAAATCCCTCGACGGCGTTTCTACCGCCTCCGTCGCC TTGCTACAGAACAAAGCCGACGTCGTTTTCAACCCGGCTCAGCTCAAGGTTTGTGCTTTCTTTGTGAATTTTTATGCTTT CCTTGTGGTTTTGCGGTAATTAGTGTTAGCTAACTGAGTTTTGTAGTACTTGGTTATTATCAATTGATGGGTCTTTGATT ACTTCTGTTATCAATTTTTTTCCTTAACTGTGTTTAGTTATTTGATTTTCTCTTCAATTTTGGTCAATCATGAAGGGGTG GTTAATGTGTGTTGATGCATTATAGAGATGTGTGCTCATTGAACCAGTAATCATGCTTGAATTTTGTTGTTGTAGTTAAT TGGAGTTGTCAAGTAACCAATTATCCCAAAAGCTTAAGCTATTTGGGTAAGGGTTACATGAATAATTTTATATTATATTC TAACACACCCTTTCAAGTAAGAGGCTACATGGGCTTGATGCAAAGGTCCACCTACCATGTGCTTAAATTCCACTTTTTAT TCGGTATGGGGACAGCAAGGATCGAACTCTAGACCTTGTGGTTATAAATGCTCTAATAAAATGTGGAATTTAAACACATG GTAGGTGGGCCTATGCATTATCCACGCTTCAAGCCCAAGTAGGCTCTTGCATGAGAGGCGTGTTAGAATATAATATAAAA CCATGCTCTGATTCCATGTTAACCAATTATCCCAAAAGTTTAAGCTATTGGGTAAGAGTTACATGAATGATTTTATATTA TATTCTAATAGAAGTCTTTTTCAGTGGTTTGTATGATTTAGTACTAGAACTTGTATTTGATGGGTATTGAGTTATGTTCT GAAACTTGTCATATTGCAGGATGAAGACATTAAAAATGCTATTGAAGATGCAGGGTTTGAAGCAGATATATTACCTGAAT CTAGTACCTCTGGAAAGGTTCCACATAGAACCCTGGTGGGACAGTTCACAATTGGAGGTATGACATGTGCAGCCTGTGTG AATTCCGTCGAAGGTATTTTGAGAAATATTCCAGGGGTCAAAAGAGCTGAGGTAGCCTTGGCTACTTCATTAGGAGAAGT TGAGTATGACCCCAGTGTAATTAGTAAAGATGATATAGTCAATGCAATCGAGGATTCTGGTTTCGAGGCGGCATTTGTAC AGAGCAATGAGCAGGATAAAATAATTTTAGAGGTTGTTGGTGTGTACAGTTTGATAGATGCACAGGTTTTAGAAGGCATG CTTAGTAGCATGAAAGGAGTAAGACAGTTCCGTTTTGACCAGAGATCAGGTGTACTAGATGTTCTGTTCGACCCTGAAGT TCTCAGTTCTAGATCCTTGGTTGATGGGATCCAGGGGGGAAGCAATGGAAAGTTTAAATTACATGTTAGAAGCCCGTATA CAAGGATGGCTTTCAAAGATGTTGAAGAGACCTCCACTATGTTTCGACTCTTTCTCTCCAGTCTGTTTCTTAGTGTGAGT ATTTCTTTAATCTTAGGTCATATAATAATTGTTAAAATTTGAGAGTCTACTACTATACTACCCGTATGTTTTTAGGTTCT TGTTTGATCTTTTGAATTTACTTTTTCTTGATGCGTTTGGCAGATCCCTCTCTTCTTGATGAAGGTAGTTTGTCCTCATA TACCATTAATATATTCCTTGTTACTTTGGAGATGTGGCCCTTTCCTCATGGATGATTGGTTGAAATGGGCATTGGTGAGT GTCATCCAATTTGTGATTGGGAAGCGCTTTTACATTGCAGCTGGCAGGGCTCTTAGAAATGGTTCAACAAACATGGATGT CCTGATTGCTGTGGGCACTACTGCGTCTTATGTTTATTCTGTTTGTGCTCTTCTATATGGCGCTCTTACTGGATTTTGGT CCCCAACTTACTTTGAAACAAGTGCTATGCTTATAACATTTGTATTGTTGGGCAAGTATTTGGAATCCCTTGCTAAGGGA AAGACATCTGATGCCATCAAGAAATTAGTAGAACTTGCTCCTCCAACAGCTTTATTAGTTGTCAAAGATAAAGGTGCTTA ACACTTTAATTTTATGTGCCTTCTTTTCATAATAAAAAGGATGTGGATCATATTTGGCTTCGATTTATCTTATATTTAGG TCAAAAATCTTCGATGAAGTTTACTGGATTTGTCAAGTTCTAGATTTCATCAATTCATTGACTACAATAACGAAATGTTT CTTGATTTTCTAGGTGGTAAATCTATTGAAGAAAGGGAAATTGATTCTTTGCTTGTTCAACCTGGTGACACATTGAAAGT TCTTCCTGGCACGAAGATTCCTGCAGATGGTATCGTTACGTGGGGCTCAAGTTATGCAAATGAGAGCATGGTAACGGGCG AATCTGCACCTGTTTTGAAGGAGGTGGGTGCTTCTGTTATTGGAGGTACAATAAATTTGCACGGCGTCCTTCACATTCAA GCTAGCAAAGTAGGATCCGATACAGTTTTGAGTCAGATAATTAGTTTGGTTGAGACGGCCCAGATGTCCAAAGCTCCCAT TCAGAAGTTTGCTGATTATGTAAGTATTTTGGTCGTGGTTTTGTTGAACTTCATATCACTTTGCGTAACCTTTATGTTTT ACTGGAGTTACTTTCATGGTGCATGCATTTCTGTACAGAATGAAATTGCATTCTCCTGTGGTAAAAAAAAGTTTTAGCTT GTCAAACACTTCTGCAGTTCTGCGAAATATTTCATGTTTCGAGATGACCTGGCACTTGTCAGTTGACTACTGCATAATTT GATCTTTTCTGAAAAATTACAATTCTTGTTATTGTGAATCACAATTGTTATTTTAAGTTAGATTTTCCCATGTAGATATT GATATATGTATGTATGTATGTATAAACAAAGCTTACAGAATTTAAAATGCTTTCGCTAATAAAGATACCTTGAGTAGCAA CCGTTCTGCATTTGGTCTGTTCCTTGGCTGCTTTTTCTGTAAATCTGGTTAACCTTGCAGAATTAGGGTAATCTTTTGAG GGCTCTCATCTGATTGCTGAAAAAAGGGAGTTAAGTAATCCACTTGTTCCAACTTTTGGCTTTCTTCCTGAATACTGGGC ATGTTTTTTGCTGGGTCGTCATTTTCTAAAAGTAGTCATCTTTTTTGTAGATTCCATTACATTAAGTGGTTGATTGGTCA ATATATAATTGAAGAAATATTAGATATGAACTCTCGTGTCATTCTCTTGGCTTGCAGGTGGCAAGTATATTTGTTCCTAC AGTTGTTTCGTTAGCATTATTGACATTATTGGGTTGGTAAGATCATCTTATCTGGTTCTGGCATAATGATAAAGTTTGTT TCTAATGTGAATGGAATGCTCATTCCTGATTTTCTCATAATTTTCGGTTTATTATCTATATATAGGTATATTGCTGGCTC TATTGGAGCTTACCCAGAAGAATGGCTTCCAGAAAATGGAAATCACTTTGTTTTTGCCCTAATGTTCTCAATATCTGTAG TGGTTATTGCATGTCCCTGTGCACTTGGCTTGGCAACCCCAACCGCTGTCATGGTGGCGACAGGGGTTGGGGCTAACAAT GGAGTATTAATTAAAGGAGGAGATGCCTTGGAAAGGGCTCAGATGGTGAAGCATGTGATATTTGATAAAACTGGTACTCT AACTCAGGGAAAAGCCTCTGTTACTACTGCCAAGGTATTCACTGGAATGCAACGTGGGGAATTTCTCACATTGGTGGCTT CTGCTGAGGTGATTTTCGATCTCTTGTCCCTTTAAAATTTCTAATTGCCTCTTTATAATACTGTCACATATATGGTTCAT AGCTTAGATTCAGTCATTCAGGTGAAGCAATGGATGACTTATGTGGGAAATTTTTCATATTTCCTCCCCTCTTCTTATCA GAGAGTTTAACTTCTCGAATGCTGTTATGGCATGAGGAACATGAATAGAGTAGATTTAGCATTTCTTCTTGTATGTTTGG CTGTCAGAAAATTTCACCTTCTATTTTAGAGGAGCCAATAATAACTTTTTCTATTTCGTTTTATTTGTTATGATGCAGGC TAGCAGTGAACACCCACTGGCAAGAGCGATATTAGCATATGCACGCCATTTTCATTTCTTTGATGACTCTTCAGCTACAA CTGATACCCTGAATGATGTGAAGTCTGGGTGGCTTTTTGATGTCTCAGACTTCTCTGCTCTCCCAGGAAGAGGTGTCCAA TGCCTTATAGATGGGAAGCGTATCTTGGTAGTGTCTTTAAACTAGTGTAATTTGGCTGTCTTGATCTCTTATTATTGTGG AATTTGCTTTATATTTTGCAAGGAGTTTCTTATCAAAGGCAGTATGTCCTTAACAGGTTGGTAATAGGAAGCTGATGGTG GAAAATGGTATAGATATTTCAACGGAAGTGGAAAATTTTGTGGTTGAGCTGGAACAAAATGCACAAACAGGGATACTGGT AGCCTATGATGATATATTAATTGGAGTTTTAGGGGTTGCGGACCCACTGAAGAGAGAAGCTTGTGTAGTTATAGAGGGCC TCCAGAAAATGGGTGTCATACCTGTTATGGTTACAGGAGATAACTGGAGAACAGCTCGTGCTGTCGCAAAGGAGGTCTGT GTACAATTATTATTATTATTATTATTATTATTATTATTATTATTATGTTGACTCTTAAAACCTAGTCTTCTGGTAACTAT TAGTGTATATTTTAAGAGTTCTAGTATCAATATCCAACACCTGACTTTTGTTTGTGCAAAGAAGACCAGTAACATGCATG TTTTATTGTAGTTTTGGTGTCTTTTTAGGGCAATTAAATAGAATTGAGGTCAGGCATGGCCAAAAGCCATGAATGGAAGA AAATCATGAGCTGGCGTATATCTGATATTGTGTTTCTAAGCAGGCTTACAGTTGATTTTCTGATCGATAACTTCAATAGT AATAGTTGAAAGAAATTTATGGTTTTCAATTTGTGATAATTAATACCAGTTTCTTAAGCTCTGTTGTGAATCACCAATTA TCTGTTTAAAGAAAAATTAATACATACAAATAGGTGAATGGAGACATGAATTTTGTGGAATAGAAAATGATGATGGTTTC AAACTCATGACAATAAACATATTGTTTGGCAGGTTGGCATCCGAGATGTTAAGGCAGAGGTTATGCCTGCGGGAAAGGCT GACATTGTACGCTCATTCCAAAAAGATGGAAGCTTGGTTGCAATGGTGGGTGATGGTATCAATGATTCTCCTGCATTAGC TGCTGCTGATGTTGGCATGGCAATCGGGGCTGGAACTGACGTTGCAATAGAAGCTGCTAACTTTGTGTTGATGAGGAATA ACTTGGAAGATGTGATCACAGCTATTGATCTTTCCCGGAAAACCTTTTCTCGCATCCGGTTGAATTATGTATTTGCAATG GCTTACAACGTTGTGGCTATACCAGTTGCCGCTGGGGTTTTATATCCTTCTTTGGGGATCAAGCTGCCACCCTGGGTTTC TGGTGCATGCATGGCTCTCTCTTCTGTAAGTGTAGTATGCTCTTCTTTGCTTCTTAAAAGATATAGAAGACCTAGACTTA CTGCAGTACTTGAAATACTTGTAGAGTAA 

CDS sequence (LotjaGi6g1v0243100.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAATCGAGGATTCTGGTTTTAGAAGGCATGCTTAGTAGCATGAAAGGAGTAAGACAGTTCCGTTTTGACCAGAGATC AGGTGTACTAGATGTTCTGTTCGACCCTGAAGTTCTCAGTTCTAGATCCTTGGTTGATGGGATCCAGGGGGGAAGCAATG GAAAGTTTAAATTACATGTTAGAAGCCCGTATACAAGGATGGCTTTCAAAGATGTTGAAGAGACCTCCACTATGTTTCGA CTCTTTCTCTCCAGTCTGTTTCTTAGTATCCCTCTCTTCTTGATGAAGGTAGTTTGTCCTCATATACCATTAATATATTC CTTGTTACTTTGGAGATGTGGCCCTTTCCTCATGGATGATTGGTTGAAATGGGCATTGGTGAGTGTCATCCAATTTGTGA TTGGGAAGCGCTTTTACATTGCAGCTGGCAGGGCTCTTAGAAATGGTTCAACAAACATGGATGTCCTGATTGCTGTGGGC ACTACTGCGTCTTATGTTTATTCTGTTTGTGCTCTTCTATATGGCGCTCTTACTGGATTTTGGTCCCCAACTTACTTTGA AACAAGTGCTATGCTTATAACATTTGTATTGTTGGGCAAGTATTTGGAATCCCTTGCTAAGGGAAAGACATCTGATGCCA TCAAGAAATTAGTAGAACTTGCTCCTCCAACAGCTTTATTAGTTGTCAAAGATAAAGGTGGTAAATCTATTGAAGAAAGG GAAATTGATTCTTTGCTTGTTCAACCTGGTGACACATTGAAAGTTCTTCCTGGCACGAAGATTCCTGCAGATGGTATCGT TACGTGGGGCTCAAGTTATGCAAATGAGAGCATGGTAACGGGCGAATCTGCACCTGTTTTGAAGGAGGTGGGTGCTTCTG TTATTGGAGGTACAATAAATTTGCACGGCGTCCTTCACATTCAAGCTAGCAAAGTAGGATCCGATACAGTTTTGAGTCAG ATAATTAGTTTGGTTGAGACGGCCCAGATGTCCAAAGCTCCCATTCAGAAGTTTGCTGATTATGTGGCAAGTATATTTGT TCCTACAGTTGTTTCGTTAGCATTATTGACATTATTGGGTTGGTATATTGCTGGCTCTATTGGAGCTTACCCAGAAGAAT GGCTTCCAGAAAATGGAAATCACTTTGTTTTTGCCCTAATGTTCTCAATATCTGTAGTGGTTATTGCATGTCCCTGTGCA CTTGGCTTGGCAACCCCAACCGCTGTCATGGTGGCGACAGGGGTTGGGGCTAACAATGGAGTATTAATTAAAGGAGGAGA TGCCTTGGAAAGGGCTCAGATGGTGAAGCATGTGATATTTGATAAAACTGGTACTCTAACTCAGGGAAAAGCCTCTGTTA CTACTGCCAAGGTATTCACTGGAATGCAACGTGGGGAATTTCTCACATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACAC CCACTGGCAAGAGCGATATTAGCATATGCACGCCATTTTCATTTCTTTGATGACTCTTCAGCTACAACTGATACCCTGAA TGATGTGAAGTCTGGGTGGCTTTTTGATGTCTCAGACTTCTCTGCTCTCCCAGGAAGAGGTGTCCAATGCCTTATAGATG GGAAGCGTATCTTGGTTGGTAATAGGAAGCTGATGGTGGAAAATGGTATAGATATTTCAACGGAAGTGGAAAATTTTGTG GTTGAGCTGGAACAAAATGCACAAACAGGGATACTGGTAGCCTATGATGATATATTAATTGGAGTTTTAGGGGTTGCGGA CCCACTGAAGAGAGAAGCTTGTGTAGTTATAGAGGGCCTCCAGAAAATGGGTGTCATACCTGTTATGGTTACAGGAGATA ACTGGAGAACAGCTCGTGCTGTCGCAAAGGAGGTTGGCATCCGAGATGTTAAGGCAGAGGTTATGCCTGCGGGAAAGGCT GACATTGTACGCTCATTCCAAAAAGATGGAAGCTTGGTTGCAATGGTGGGTGATGGTATCAATGATTCTCCTGCATTAGC TGCTGCTGATGTTGGCATGGCAATCGGGGCTGGAACTGACGTTGCAATAGAAGCTGCTAACTTTGTGTTGATGAGGAATA ACTTGGAAGATGTGATCACAGCTATTGATCTTTCCCGGAAAACCTTTTCTCGCATCCGGTTGAATTATGTATTTGCAATG GCTTACAACGTTGTGGCTATACCAGTTGCCGCTGGGGTTTTATATCCTTCTTTGGGGATCAAGCTGCCACCCTGGGTTTC TGGTGCATGCATGGCTCTCTCTTCTGTAAGTGTAGTATGCTCTTCTTTGCTTCTTAAAAGATATAGAAGACCTAGACTTA CTGCAGTACTTGAAATACTTGTAGAGTAA 

Protein sequence (LotjaGi6g1v0243100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQSRILVLEGMLSSMKGVRQFRFDQRSGVLDVLFDPEVLSSRSLVDGIQGGSNGKFKLHVRSPYTRMAFKDVEETSTMFR LFLSSLFLSIPLFLMKVVCPHIPLIYSLLLWRCGPFLMDDWLKWALVSVIQFVIGKRFYIAAGRALRNGSTNMDVLIAVG TTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLESLAKGKTSDAIKKLVELAPPTALLVVKDKGGKSIEER EIDSLLVQPGDTLKVLPGTKIPADGIVTWGSSYANESMVTGESAPVLKEVGASVIGGTINLHGVLHIQASKVGSDTVLSQ IISLVETAQMSKAPIQKFADYVASIFVPTVVSLALLTLLGWYIAGSIGAYPEEWLPENGNHFVFALMFSISVVVIACPCA LGLATPTAVMVATGVGANNGVLIKGGDALERAQMVKHVIFDKTGTLTQGKASVTTAKVFTGMQRGEFLTLVASAEASSEH PLARAILAYARHFHFFDDSSATTDTLNDVKSGWLFDVSDFSALPGRGVQCLIDGKRILVGNRKLMVENGIDISTEVENFV VELEQNAQTGILVAYDDILIGVLGVADPLKREACVVIEGLQKMGVIPVMVTGDNWRTARAVAKEVGIRDVKAEVMPAGKA DIVRSFQKDGSLVAMVGDGINDSPALAAADVGMAIGAGTDVAIEAANFVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAM AYNVVAIPVAAGVLYPSLGIKLPPWVSGACMALSSVSVVCSSLLLKRYRRPRLTAVLEILVE 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 85 85 -
PANTHER 7 781 775 0.0
PANTHER 7 781 775 0.0
CDD 80 752 673 0.0
TMHMM 84 106 23 -
Phobius 86 109 24 -
Phobius 110 120 11 -
Phobius 121 143 23 -
TMHMM 121 143 23 -
PRINTS 138 157 20 3.5E-12
Phobius 144 154 11 -
TIGRFAM 153 765 613 9.3E-190
Phobius 155 177 23 -
TMHMM 156 178 23 -
SUPERFAMILY 172 731 560 1.96E-13
Phobius 178 182 5 -
Phobius 183 202 20 -
TMHMM 188 205 18 -
PRINTS 189 208 20 3.5E-12
TIGRFAM 192 466 275 2.2E-38
Phobius 203 337 135 -
Gene3D 207 329 123 5.3E-41
PRINTS 209 227 19 3.5E-12
Pfam 220 418 199 1.3E-45
SUPERFAMILY 239 325 87 3.01E-22
PRINTS 275 289 15 3.1E-28
Phobius 338 363 26 -
TMHMM 341 363 23 -
PRINTS 348 362 15 3.5E-12
Phobius 364 382 19 -
Phobius 383 404 22 -
TMHMM 383 405 23 -
Phobius 405 715 311 -
Gene3D 420 708 289 1.3E-91
SFLD 421 708 288 0.0
SFLD 421 708 288 0.0
Pfam 435 670 236 7.0E-42
SUPERFAMILY 438 762 325 7.76E-60
PRINTS 439 453 15 3.1E-28
ProSitePatterns 441 447 7 -
Gene3D 450 588 139 1.3E-91
TIGRFAM 526 736 211 7.4E-49
PRINTS 581 592 12 3.1E-28
PRINTS 603 613 11 3.1E-28
PRINTS 656 675 20 3.1E-28
PRINTS 679 691 13 3.1E-28
PRINTS 690 704 15 3.5E-12
TMHMM 716 738 23 -
Phobius 716 738 23 -
PRINTS 729 743 15 3.5E-12
Phobius 739 743 5 -
TMHMM 743 765 23 -
Phobius 744 765 22 -
Phobius 766 782 17 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Biological process Cation transport The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Molecular function Cation-transporting ATPase activity Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in).

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0243100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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