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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0244300 |
| Transcript ID | LotjaGi6g1v0244300.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase; TAIR: AT5G44030.1 cellulose synthase A4; Swiss-Prot: sp|Q84JA6|CESA4_ARATH Cellulose synthase A catalytic subunit 4 [UDP]-forming]; TrEMBL-Plants: tr|G7INF0|G7INF0_MEDTR Cellulose synthase; Found in the gene: LotjaGi6g1v0244300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55695829..55700835) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTACTATATTCATTTTTCCATTTTTTTTTTCTCTTTTTGGTTTTTTTCAGCATCAGCCTCCTCCTCCTTCTCATCA ACCTTCATCGAAAACATGTCGAGTTTGTGGTGATGAGGTTGGAATTAAGGAAGATGGGGAGCTTTTTGTGGCTTGTCATG TGTGTGGATTTCCTGTTTGCCGACCTTGTTATGAGTATGAGAGGAGTGAAGGGAACCAGTGCTGCCCTCAATGCAGCACT CGCTATAAGCGTCACAAAGGTTGGCATATATAGCTCTCTGTCACTGTATGAAATTGTGTTATTTATAAGGACTTGGTTTT GTTAGTAAAAAAATGTAGGCTTGATAACTTATATAGATATGGTGATGGTGGCTTCCCCTGCAGGTTGTCCTAGAGTGGCT GGAGATGAAGAGGATAACTTTGATGCAGATGATTTTGAGGATGAATTTCAGCTTAAGAATCGTCATGATGATCTAGATCA GCACCGTGATGGAAGTCATGTGGTAATTTGTTCTAATCATAAGATAGAAGAATCATAAATGAGAAATCAGCTTCTCTTAA AAAATTCATGCAAGGCAAAAGTTGTTAATCTTAGATGCTTTTCCATGAATGGGGTTTCACTAAAATGAATCAGAAAATTC GCACTATGACTAGTGCTAATTAATTGAATATGAATCATTAAAGAAGCTATGGGTCTGTTGTGACTTTTACAGGAAAATGG GGACTACAATCAACAGAAATTGCATTCCAATGGCCAAGTTTTCTCTTCAGCAGGAAGTGGTAAGAAACTTATTTAATTTT GCTAAGTATCCATGATAATGATTGTCTTTCTGAGAAATTCTCTTTTATTAATGTATTGGTGTACTGTTTTATAGTCACTG GCAAGGATTTTGAAGGGGAGAAAGATCTCAACAGTAATGCAGAATGGCAAGAAAGAGTAGAGAAATGGAAAGTCAGGCAA GAAAAGAAAGGTCTACTAAACAAAGAGGAGGGGAAAGAAGATCCAGGTGAAGATGATGATTATCTGTAAGTGAACTCTTC AGAGCTTGTCTAATTTAAAGTATACCACAAGGCACAATGTAATTTAACTGGTACTGATTTTTCTTTTTGGCACTTCACAG TTTGGCTGAAGCTAGGCAACCACTGTGGCGAAAGGTTCCAATATCTTCAAGCTTAATCAATCCATACCGCATAGTAATTG TGATGAGGCTGGTTATCCTAGCTTTCTTCTTTCGATTCCGTATCTTAACACCAGCATATGATGCATATCCCTTGTGGCTT ATCTCTGTGATATGTGAGATATGGTTTGCACTGTCATGGATACTTGATCAGTTCCCCAAGTGGCTCCCCATCACCCGCGA AACTTACCTGGACCGTTTGTCCATAAGGTTTGAGCGCGAAGGCGAGCCAAACCAGCTTTCCCCAGTTGATGTCTATGTGA GTACTGTGGACCCTTTGAAGGAACCACCAATTATAACAGCAAACACTGTTCTGTCAATCCTCTCTGTTGATTACCCTGTG GACAAGGTCAGCTGCTATGTCTCAGATGATGGTGCTTCAATGCTTCTGTTTGATTCACTGGCAGAAACTGCTGAGTTTGC AAGAAGATGGGTTCCTTTTTCCAAGAAGTATAACATAGAGCCAAGGGCTCCTGAGTACTACTTCTCTGAGAAAATTGATT ACTTGAAGGATAAGGTGCAGCCTACATTTGTGAAGGAAAGAAGGGCTATGAAGGTGGGAGAAAAAAGATAGAATAAGAAA TATGATCTTATGTTTTAAGTTTTTCTTTGTTGTTATCTCAATATCCATGCAAGACTTGTAGTAATTCTTGTGTGTTTTCT CCATGGCAGAGAGAATATGAAGAATTTAAGGTGAAGATTAATGCTTTGGTGGCAAAGGCTCTGAAGAAACCAGAGGAGGG GTGGGTTATGCAGGATGGAACTCCATGGCCTGGTAACAATACTCGTGATCATCCAGGAATGATTCAGGTTTGGTTATTGA ATCCTCTAGTTATAGCATGTTTTGATCAGCTTATTTCTTCTCAGAATCAATTTTGAAAACCAGAAGTTACTCACAGAAAC TTCTCAAAAGAATTGATTCTGGCTTTAGAATCAATCATAGAAGAATTTCCAAACATGCTATTAGGTTTTTTTTTTGTAGT TTTGTGTACTTATCATTATCTTATCATTAAGGAACAACCACAACAGAAAAGAAAATGAGAAACACCTTGCATTTTTGGAA TGTGCATAGCCAATGAATTAGACCCCCTCCCCCTTTAGTTAGTGGGAAAGGAAGGAAAAGATGGTTCCCATTCTTTCCAT CTTTGCTTCAAATCTCAGGATAATGTTAATAGTTTATAAGTTAAATTTTCCTATTTGAAAAAACCAAGTTTGCGTCAACA AAAGACATTAATGAGAGCAATAGTTGATCTCAAGTGATGTGCCTTTGCAGGTATATTTAGGAAGTGCTGGTGCATTAGAC GTGGAAGGCAAGGAACTGCCCCGACTTGTGTATATTTCGCGTGAGAAACGTCCTGGATATCCACATCACAAAAAAGCTGG TGCCATGAATGCTTTGGTATGTTCAAAAACTTTTGTATTGTGTAATTCCTACAGGACAAGGATACTAGAAACCTGCTTTT AACTCTTTTGCTGTTGTCTATCCCCTAAGGTTCGAGTTTCTGCTGTGCTTACAAATGCACCATTCATGTTGAATCTGGAT TGTGACCACTACATCAATAATAGCAAGGCCATAAGAGAGGCTATGTGCTTTTTAATGGATCCCCAGCTTGGGAAGAAGCT CTGCTATGTCCAATTTCCACAAAGATTTGATGGGATTGATCGCCATGATAGATATGCTAACCGCAACACTGTGTTCTTTG ATGTAAGTGCCATTCTTCTAAACTCCAACATAACAAACTTGTGAAAATTTTCATTACAATAACTGACCTTTAACAATTTG ACTTCAATGTTGCTTTCATCATAGATCAATATGAAAGGGCTTGATGGGATTCAAGGTCCAGTGTATGTTGGTACTGGAAC TGTGTTCAACAGGCAGGCATTATATGGCTATGATCCACCAGTGTCTGAGAAAAGACCAAAGATGACATGTGACTGCTGGC CATCATGGTGTTGCTTCTGTTGTGGTGGTTCAAGGAAGTCCAAGTCAAAAAAGAAATCAGGAAGAAAAGGTCTCTTCAGT GGATTGTACACCAAGAAGAAGAAAATGATGGGGAAAGATTATGTTAGGAAAGGGTCTGGTACCATGTTTGATCTTGAAGA GATTGAAGAAGGGCTTGAAGGCTATGAGGAGCTAGAGAAATCAACCCTCATGTCTCAGAAAAATTTCGAGAAGCGATTCG GTCAATCACCGGTTTTCATTGCTTCCACTTTGGTGGAAAATGGAGGACTTCCTGAAGGCACAAATACTCAATCACTAGTC AAGGAAGCTATTCATGTTATAAGCTGTGGCTATGAGGAGAAAACTGAATGGGGAAAAGAGGTAAAGCCATTAATTCCAAA ACAACGAAGAAATATTTGCATCTTCTTAAATGCTTTTTATATCAAATAGGCTATGATTACTTATTAGAAATTGTTTTACA ACATTAAGCAAGGTACATAGAGTTATATCTATGACTCCTTTTGACAAATTTGTTTCAATTACAGATTGGATGGATTTATG GTTCGGTCACAGAAGATATTTTGACTGGATTTAAGATGCACTGCAGAGGATGGAAATCAGTGTATTGCATGCCAAAGAGA CCAGCTTTCAAGGGATCTGCTCCAATAAATCTATCAGATCGGTTGCACCAAGTTCTGAGATGGGCCCTTGGTTCTATTGA GATTTTCCTCAGTCGTCATTGTCCATTGTGGTATGGCTATGCAGGGAAGCTCAAGTACCTAGAGAGGATGGCTTACATTA ACACCATTGTTTATCCATTCACTTCCATCCCTCTCCTTGCATACTGCACAATTCCAGCTGTGTGTCTCCTCACTGGAAAA TTCATCATCCCCACAGTATGTACACAACTATAAATTTCTTGTGATCATATTTGATTCCCTTATCAGCTTTCTGAATTTAA AAACTATTTTCAGAAACAATTAGTAAGGAAAAAACTGTTTGAGCATATGTTTTTCAAAGCTAAAAATCCTGTGATTTAGA TACAGGTCTTTGAGATGTTTTGAGATTTCAGTATGTTTTCAGAACAATTTTTTAAAACTGTTTATATCAAACGAGTTTTT TTTTTTTTTTGCTCTTTCTGTTTATAAAAACTGAAAACTGTTTTCCAAATCAGTAATAAAAAATTCTCCAGTGATTTGCT TTCACATAGTTGTTAAAAGAGAAGACATTGGGAAGGAAACCTATAATACTTCTATGAGAGACATGTCTTCTGAATGTGAG TTTGTTTTTTGTTTTTCCTGTGCAGCTGACAAACCTTGCTAGTGTTTGGTTCATGGCTCTATTTATCTCCATCATCTTGA CCGGTGTGCTTGAGCTCCGGTGGAGTGGGGTTTTGATTGAAGACTGGTGGCGCAATGAGCAATTCTGGGTCATTGGAGGT GTTTCTGCTCATCTTTTTGCTGTGTTTCAAGGTCTCCTCAAAGTCCTTGCTGGAGTAGACACCAATTTCACAGTCACAGC AAAAGCAGCAGAAGATGCTGAATTTGGAGAGCTCTATCTCTTCAAGTGGACCACTCTTCTCATCCCACCAACCACTCTTA TTATCTTGAACATTGTAGGAGTTGTTGCTGGAGTCTCTGATGCTATTAACAATGGTTATGGCTCATGGGGACCTTTATTT GGGAAGCTATTTTTTGCCTTCTGGGTCATTGTTCATTTATATCCTTTCCTCAAAGGTCTCATGGGAAAGCAAAACAGGAC TCCTACCATTGTGGTCCTGTGGTCAATCCTCTTGGCCTCAATTTTCTCATTGATTTGGGTCAGGATTGATCCTTTCTTGC CCAAGCAAACTGGTCCAGTTCTCAAACAATGTGGGGTGGAATGCTGA
CDS sequence (LotjaGi6g1v0244300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTACTATATTCATTTTTCCATTTTTTTTTTCTCTTTTTGGTTTTTTTCAGCATCAGCCTCCTCCTCCTTCTCATCA ACCTTCATCGAAAACATGTCGAGTTTGTGGTGATGAGGTTGGAATTAAGGAAGATGGGGAGCTTTTTGTGGCTTGTCATG TGTGTGGATTTCCTGTTTGCCGACCTTGTTATGAGTATGAGAGGAGTGAAGGGAACCAGTGCTGCCCTCAATGCAGCACT CGCTATAAGCGTCACAAAGGTTGTCCTAGAGTGGCTGGAGATGAAGAGGATAACTTTGATGCAGATGATTTTGAGGATGA ATTTCAGCTTAAGAATCGTCATGATGATCTAGATCAGCACCGTGATGGAAGTCATGTGGAAAATGGGGACTACAATCAAC AGAAATTGCATTCCAATGGCCAAGTTTTCTCTTCAGCAGGAAGTGTCACTGGCAAGGATTTTGAAGGGGAGAAAGATCTC AACAGTAATGCAGAATGGCAAGAAAGAGTAGAGAAATGGAAAGTCAGGCAAGAAAAGAAAGGTCTACTAAACAAAGAGGA GGGGAAAGAAGATCCAGGTGAAGATGATGATTATCTTTTGGCTGAAGCTAGGCAACCACTGTGGCGAAAGGTTCCAATAT CTTCAAGCTTAATCAATCCATACCGCATAGTAATTGTGATGAGGCTGGTTATCCTAGCTTTCTTCTTTCGATTCCGTATC TTAACACCAGCATATGATGCATATCCCTTGTGGCTTATCTCTGTGATATGTGAGATATGGTTTGCACTGTCATGGATACT TGATCAGTTCCCCAAGTGGCTCCCCATCACCCGCGAAACTTACCTGGACCGTTTGTCCATAAGGTTTGAGCGCGAAGGCG AGCCAAACCAGCTTTCCCCAGTTGATGTCTATGTGAGTACTGTGGACCCTTTGAAGGAACCACCAATTATAACAGCAAAC ACTGTTCTGTCAATCCTCTCTGTTGATTACCCTGTGGACAAGGTCAGCTGCTATGTCTCAGATGATGGTGCTTCAATGCT TCTGTTTGATTCACTGGCAGAAACTGCTGAGTTTGCAAGAAGATGGGTTCCTTTTTCCAAGAAGTATAACATAGAGCCAA GGGCTCCTGAGTACTACTTCTCTGAGAAAATTGATTACTTGAAGGATAAGGTGCAGCCTACATTTGTGAAGGAAAGAAGG GCTATGAAGAGAGAATATGAAGAATTTAAGGTGAAGATTAATGCTTTGGTGGCAAAGGCTCTGAAGAAACCAGAGGAGGG GTGGGTTATGCAGGATGGAACTCCATGGCCTGGTAACAATACTCGTGATCATCCAGGAATGATTCAGGTATATTTAGGAA GTGCTGGTGCATTAGACGTGGAAGGCAAGGAACTGCCCCGACTTGTGTATATTTCGCGTGAGAAACGTCCTGGATATCCA CATCACAAAAAAGCTGGTGCCATGAATGCTTTGGTTCGAGTTTCTGCTGTGCTTACAAATGCACCATTCATGTTGAATCT GGATTGTGACCACTACATCAATAATAGCAAGGCCATAAGAGAGGCTATGTGCTTTTTAATGGATCCCCAGCTTGGGAAGA AGCTCTGCTATGTCCAATTTCCACAAAGATTTGATGGGATTGATCGCCATGATAGATATGCTAACCGCAACACTGTGTTC TTTGATATCAATATGAAAGGGCTTGATGGGATTCAAGGTCCAGTGTATGTTGGTACTGGAACTGTGTTCAACAGGCAGGC ATTATATGGCTATGATCCACCAGTGTCTGAGAAAAGACCAAAGATGACATGTGACTGCTGGCCATCATGGTGTTGCTTCT GTTGTGGTGGTTCAAGGAAGTCCAAGTCAAAAAAGAAATCAGGAAGAAAAGGTCTCTTCAGTGGATTGTACACCAAGAAG AAGAAAATGATGGGGAAAGATTATGTTAGGAAAGGGTCTGGTACCATGTTTGATCTTGAAGAGATTGAAGAAGGGCTTGA AGGCTATGAGGAGCTAGAGAAATCAACCCTCATGTCTCAGAAAAATTTCGAGAAGCGATTCGGTCAATCACCGGTTTTCA TTGCTTCCACTTTGGTGGAAAATGGAGGACTTCCTGAAGGCACAAATACTCAATCACTAGTCAAGGAAGCTATTCATGTT ATAAGCTGTGGCTATGAGGAGAAAACTGAATGGGGAAAAGAGATTGGATGGATTTATGGTTCGGTCACAGAAGATATTTT GACTGGATTTAAGATGCACTGCAGAGGATGGAAATCAGTGTATTGCATGCCAAAGAGACCAGCTTTCAAGGGATCTGCTC CAATAAATCTATCAGATCGGTTGCACCAAGTTCTGAGATGGGCCCTTGGTTCTATTGAGATTTTCCTCAGTCGTCATTGT CCATTGTGGTATGGCTATGCAGGGAAGCTCAAGTACCTAGAGAGGATGGCTTACATTAACACCATTGTTTATCCATTCAC TTCCATCCCTCTCCTTGCATACTGCACAATTCCAGCTGTGTGTCTCCTCACTGGAAAATTCATCATCCCCACACTGACAA ACCTTGCTAGTGTTTGGTTCATGGCTCTATTTATCTCCATCATCTTGACCGGTGTGCTTGAGCTCCGGTGGAGTGGGGTT TTGATTGAAGACTGGTGGCGCAATGAGCAATTCTGGGTCATTGGAGGTGTTTCTGCTCATCTTTTTGCTGTGTTTCAAGG TCTCCTCAAAGTCCTTGCTGGAGTAGACACCAATTTCACAGTCACAGCAAAAGCAGCAGAAGATGCTGAATTTGGAGAGC TCTATCTCTTCAAGTGGACCACTCTTCTCATCCCACCAACCACTCTTATTATCTTGAACATTGTAGGAGTTGTTGCTGGA GTCTCTGATGCTATTAACAATGGTTATGGCTCATGGGGACCTTTATTTGGGAAGCTATTTTTTGCCTTCTGGGTCATTGT TCATTTATATCCTTTCCTCAAAGGTCTCATGGGAAAGCAAAACAGGACTCCTACCATTGTGGTCCTGTGGTCAATCCTCT TGGCCTCAATTTTCTCATTGATTTGGGTCAGGATTGATCCTTTCTTGCCCAAGCAAACTGGTCCAGTTCTCAAACAATGT GGGGTGGAATGCTGA
Protein sequence (LotjaGi6g1v0244300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTIFIFPFFFSLFGFFQHQPPPPSHQPSSKTCRVCGDEVGIKEDGELFVACHVCGFPVCRPCYEYERSEGNQCCPQCST RYKRHKGCPRVAGDEEDNFDADDFEDEFQLKNRHDDLDQHRDGSHVENGDYNQQKLHSNGQVFSSAGSVTGKDFEGEKDL NSNAEWQERVEKWKVRQEKKGLLNKEEGKEDPGEDDDYLLAEARQPLWRKVPISSSLINPYRIVIVMRLVILAFFFRFRI LTPAYDAYPLWLISVICEIWFALSWILDQFPKWLPITRETYLDRLSIRFEREGEPNQLSPVDVYVSTVDPLKEPPIITAN TVLSILSVDYPVDKVSCYVSDDGASMLLFDSLAETAEFARRWVPFSKKYNIEPRAPEYYFSEKIDYLKDKVQPTFVKERR AMKREYEEFKVKINALVAKALKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELPRLVYISREKRPGYP HHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAIREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNTVF FDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCFCCGGSRKSKSKKKSGRKGLFSGLYTKK KKMMGKDYVRKGSGTMFDLEEIEEGLEGYEELEKSTLMSQKNFEKRFGQSPVFIASTLVENGGLPEGTNTQSLVKEAIHV ISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSIEIFLSRHC PLWYGYAGKLKYLERMAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIILTGVLELRWSGV LIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTAKAAEDAEFGELYLFKWTTLLIPPTTLIILNIVGVVAG VSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPVLKQC GVEC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| Phobius | 15 | 18 | 4 | - | – | |
| Gene3D | 18 | 107 | 90 | 7.8E-37 | ||
| Phobius | 19 | 218 | 200 | - | – | |
| SUPERFAMILY | 21 | 99 | 79 | 1.18E-33 | – | |
| PANTHER | 25 | 115 | 91 | 0.0 | – | |
| Pfam | 25 | 98 | 74 | 5.3E-37 | ||
| PANTHER | 25 | 115 | 91 | 0.0 | – | |
| CDD | 31 | 81 | 51 | 3.72225E-31 | – | |
| PANTHER | 163 | 1042 | 880 | 0.0 | – | |
| PANTHER | 163 | 1042 | 880 | 0.0 | – | |
| Phobius | 219 | 236 | 18 | - | – | |
| TMHMM | 224 | 241 | 18 | - | – | |
| Phobius | 237 | 247 | 11 | - | – | |
| Phobius | 248 | 267 | 20 | - | – | |
| TMHMM | 248 | 267 | 20 | - | – | |
| Phobius | 268 | 821 | 554 | - | – | |
| Pfam | 301 | 1037 | 737 | 0.0 | ||
| SUPERFAMILY | 314 | 846 | 533 | 3.71E-10 | ||
| Coils | 399 | 419 | 21 | - | – | |
| Gene3D | 407 | 592 | 186 | 1.1E-13 | ||
| TMHMM | 821 | 843 | 23 | - | – | |
| Phobius | 822 | 843 | 22 | - | – | |
| Phobius | 844 | 854 | 11 | - | – | |
| Phobius | 855 | 873 | 19 | - | – | |
| TMHMM | 855 | 877 | 23 | - | – | |
| Phobius | 874 | 892 | 19 | - | – | |
| TMHMM | 892 | 914 | 23 | - | – | |
| Phobius | 893 | 913 | 21 | - | – | |
| Phobius | 914 | 933 | 20 | - | – | |
| Phobius | 934 | 955 | 22 | - | – | |
| TMHMM | 934 | 956 | 23 | - | – | |
| Phobius | 956 | 974 | 19 | - | – | |
| TMHMM | 971 | 993 | 23 | - | – | |
| Phobius | 975 | 993 | 19 | - | – | |
| Phobius | 994 | 1004 | 11 | - | – | |
| Phobius | 1005 | 1025 | 21 | - | – | |
| TMHMM | 1006 | 1025 | 20 | - | – | |
| Phobius | 1026 | 1044 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of LotjaGi6g1v0244300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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