Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0248100.3

Overview

Field Value
Gene ID LotjaGi6g1v0248100
Transcript ID LotjaGi6g1v0248100.3
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Cullin-1; TAIR: AT4G02570.1 cullin 1; Swiss-Prot: sp|Q94AH6|CUL1_ARATH Cullin-1; TrEMBL-Plants: tr|A0A0B2STE7|A0A0B2STE7_GLYSO Cullin-1; Found in the gene: LotjaGi6g1v0248100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:56019684..56022342) extracted from Lotus japonicus Gifu genome v1.2.

CTGGCATATGTGAACGATTGTTTCCAAAATCATACTCTTTTCCACAAGGTTATGATCATAAGATGATTTTGAAATTACTA TTTTTAATTGATATGTTCTGATAGTCTTGATCCTACAGGCTCTCAAGGAAGCTTTTGAGATCTTTTGCAACAAGGGTGTT GCTGGAAGCTCAAGTGCAGAACTTCTTGCTACTTTCTGTGATAATATTCTTAAGAAAGGAGGAAGTGAAAAATTGAGTGA TGAAGCAATTGAAGAAACTCTTGAAAAGGTCTGCAAAGCATCAGTCTAGATGTGCCATACATACTTCTATAACCTTGGTG CTTGTGGTTCTGAAATTTCCTTTGGTCCATTTGCAGGTTGTCAAGTTGCTTGCCTATATTAGCGACAAAGATTTGTTTGC TGAATTTTATAGGTAAACACCATAGAAAAGGAAATATCTTTGATGATTATTAGGTTAGAAATGCTTTCCAAATATGCGAT TATGGTAATGCTTCTCAAGGGAGGTGCTTCTTCTTTTTGAAGCAGTTGTTTTAGGTTTTGTGCAATTTCATTGGCATCTG TTCAATAAAAATTGCTGCTATTGCTTCTAAATTAGTTCTAAAAATCAAAGTTGGTTATGTCTATAAAGCATTTTGGTGAG CGCTGATGCATGTACCTGACCCTGCCTAGTGGGAAAAGGGTTGAATGATAATGATGATGATGTCAATGGGCTAAATAGAA TATTTAGTTAAAAGGGAATTAATAGAGATAGTGGTGTGGTAAAATGAATTGCAATTATTTTGAAATGTAACTTTGTCTTA TAGTATTTGCTTTATCATGTTACTTTTTATCAGCTTATCTTACAAAAAAATCGATTATACAAGGATTATTTGAGATTTTC AGGGACAAAAAGTGGAGATAGACAATGTCTTCCCTATTATACTAATTGATACTAGGGATACCAAACACATCCTCTCTGGT TTTGGCCCTTCGATTTTATTTTCTTATCATGCCTTACTTTTTTTTTGTATTATGCATTTATGCTGCATAAAAACTTTGAA TCAATATGCCATAATCAATGATACTGTTTTAGTTCATCAATGAAATGTAGCTTTCTTGTGCCGTGTTTTGAAAATCAAAG TTACCTTTTTACCTAATGTAAGGTTTCAAGTGAAAAGTTACATGTCCTTGCCTGATTCTCTGCAGGAAAAAGCTTGCTCG AAGGCTTCTTTTTGATAAGAGTGCCAACGATGACCATGAGAGAAGTATTTTGACAAAATTGAAGCAACAATGTGGTGGCC AATTTACGTCAAAGATGGAAGGAATGGTCAGTCTTTTGAAATCTTTGTAAATACTCTATTCACCTACTTTATAGAATGAC GGAAAAAAATTAATTACTTGCGGCTTCCACCAGGTTACGGATTTGACACTTGCAAAGGAGAACCAAGCAAGCTTTGAGGA ATATTTAAGTAATAATGCTCTTGCAGACCCTGGACTTGACTTGACAGTTACAGTTCTGACTACTGGTTTCTGGCCTAGTT ACAAATCTTTTGACCTTAATCTTCCTGCAGAAATGGTATGTCTGGATTTTGTTGATATTACCTATCAGAACTTATTTGCA GAGTGTTTGGTAGTATATAAGCTAAATTTAGTTCAGTTTGGTTTATACATGAATCCTTTCTTTTACTTATTTCAGGTTAG ATGTGTTGAAGTTTTCAAGGAGTTTTATCAAACAAAAACTAAGCACAGAAAGCTTACTTGGATCTATTCCTTGGGTACCT GCAATATAAGCGGAAAATTTGAACCAAAAACTATGGAGCTGATTGTGACGACTTACCAGGTTATATTCAGCATGCTTCTT AATGTGTAGAAGTGTACCTGTTATGTCTTCACTACCTCTTTTTTTTGTGATGTCCATAGATTTTTGTCTGGATTTTTCTC TACGTATCCAACGTTGTCTCTTCTTTCAACAGGCTTCAGCATTGCTTCTTTTTAATTCCTCAGATAGACTGAGTTATTCG GACATAATGACTCAGTTAAACTTATCTGATGAGGATGTTATTAGACTTCTCCATTCCTTGTCATGTGCCAAGTACAAGAT CCTTAACAAGGAACCAAGCACAAAAACAATATCTCCTACTGATTATTTTGAATTTAATTCAAAATTCACAGACAAAATGA GGAGGATCAAGGTAAATTTGTCTTAAAAATCATTTTAAGCTGTTATCTATTTCTATTTGTGTTGGACTGTTGGTATCTTA ATCTCTCAATTAAGTGTGCTGACTGATTAGTGGGATGCATAATTCGTCATGCAGATTCCTCTTCCTCCTGTGGATGAGAA GAAAAAAGTAATTGAGGATGTTGACAAAGACAGAAGATATGCTATTGATGCCTCAATTGTGCGTATAATGAAGAGTCGGA AAGTTTTAAGTTACCAACAGTTAGTTATGGAGTGTGTTGAACAGTTAGGTCGCATGTTTAAGGTCAGTACTTCATCCCTC TCTTACATAATTTGTTCCGCCTGCCATTTTTTCAAAGACACTTGACTTTTTCGATGTGGAATTATGTGTATGTACAGCCT GATGTCAAGGCAATTAAGAAGCGTATTGAAGATTTGATCTCTCGAGACTACTTGGAAAGAGACAAAGATAATGCAAATTT GTTCAAGTACTTAGCATGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0248100.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGGAATGGTTACGGATTTGACACTTGCAAAGGAGAACCAAGCAAGCTTTGAGGAATATTTAAGTAATAATGCTCT TGCAGACCCTGGACTTGACTTGACAGTTACAGTTCTGACTACTGGTTTCTGGCCTAGTTACAAATCTTTTGACCTTAATC TTCCTGCAGAAATGGTTAGATGTGTTGAAGTTTTCAAGGAGTTTTATCAAACAAAAACTAAGCACAGAAAGCTTACTTGG ATCTATTCCTTGGGTACCTGCAATATAAGCGGAAAATTTGAACCAAAAACTATGGAGCTGATTGTGACGACTTACCAGGC TTCAGCATTGCTTCTTTTTAATTCCTCAGATAGACTGAGTTATTCGGACATAATGACTCAGTTAAACTTATCTGATGAGG ATGTTATTAGACTTCTCCATTCCTTGTCATGTGCCAAGTACAAGATCCTTAACAAGGAACCAAGCACAAAAACAATATCT CCTACTGATTATTTTGAATTTAATTCAAAATTCACAGACAAAATGAGGAGGATCAAGATTCCTCTTCCTCCTGTGGATGA GAAGAAAAAAGTAATTGAGGATGTTGACAAAGACAGAAGATATGCTATTGATGCCTCAATTGTGCGTATAATGAAGAGTC GGAAAGTTTTAAGTTACCAACAGTTAGTTATGGAGTGTGTTGAACAGTTAGGTCGCATGTTTAAGCCTGATGTCAAGGCA ATTAAGAAGCGTATTGAAGATTTGATCTCTCGAGACTACTTGGAAAGAGACAAAGATAATGCAAATTTGTTCAAGTACTT AGCATGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0248100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEGMVTDLTLAKENQASFEEYLSNNALADPGLDLTVTVLTTGFWPSYKSFDLNLPAEMVRCVEVFKEFYQTKTKHRKLTW IYSLGTCNISGKFEPKTMELIVTTYQASALLLFNSSDRLSYSDIMTQLNLSDEDVIRLLHSLSCAKYKILNKEPSTKTIS PTDYFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLSYQQLVMECVEQLGRMFKPDVKA IKKRIEDLISRDYLERDKDNANLFKYLA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00182
1 93 93 1.9E-14
IPR016158
PANTHER
PTHR11932
1 268 268 1.7E-169 –
PANTHER
PTHR11932:SF133
1 268 268 1.7E-169 –
SUPERFAMILY
SSF75632
1 184 184 2.35E-57
IPR036317
Pfam
PF00888
1 171 171 1.5E-53
IPR001373
ProSiteProfiles
PS50069
1 143 143 28.127
IPR016158
Gene3D
G3DSA:1.10.10.2620
31 184 154 3.3E-53 –
CDD
cd17526
172 202 31 0.00481945 –
SUPERFAMILY
SSF46785
183 268 86 1.49E-28
IPR036390
Gene3D
G3DSA:1.10.10.10
185 268 84 6.3E-31
IPR036388
SMART
SM00884
195 262 68 2.7E-34
IPR019559
Pfam
PF10557
198 260 63 1.4E-26
IPR019559

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0031625
Molecular function Ubiquitin protein ligase binding Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0248100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…