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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0248900 |
| Transcript ID | LotjaGi6g1v0248900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle-associated membrane protein, putative; TAIR: AT4G15780.1 vesicle-associated membrane protein 724; Swiss-Prot: sp|O23429|VA724_ARATH Vesicle-associated membrane protein 724; TrEMBL-Plants: tr|I3SDA5|I3SDA5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0248900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56111748..56114879) extracted from Lotus japonicus Gifu genome v1.2.
TGAAGGACTCACAAGCTATGCCTTGATTATTGAGGGGCTCACCCTTATGTCAACTTTAGCGAATCTTTTACTTGCTATGA CTATTGACCATTTTGAGAGAGATTACACCACTCACGCGTCACCAAGACCGGCTCATAATGTGGAAAGCTCCTAACTAGTC CACAAATCCACAAAACGTCATGCTATAAAAGGGTCAATGTGTCTTTAATGGCTCGCCTTTTCCTTGGTAATTTCCTGAGT AATCCAAATTTCATTTGTGATCCGTGATTCTTTGATTTTAATAGAAAAAAGGAAAAATTCTTTCTTCATAACAAAGTAAA AAGAAAAAACAGAAATAGAACAAAACCAAACGGGGCCTAGAAATTTCTAGTTAACGTAGAGAGCAACCAAACCAAGCTCT CTCTTTCTTTCCCTCTGAGCTGCGAGCGAGTTAACTCAGTTGCAGAGCGCAATGAGTCAGGAATCGTTCATATACAGCTT CGTGGCTCGTGGGACGATGGTGCTAGCTGAGTACACCGAGTTCACTGGGAACTTCCCTGCCATTGCAGCTCAGTGTCTCC AGAAACTAACCTCTTCCAACAACAAGTTCACCTACAACTGTGACCACCACACCTTCAATTTCTTGGTGGAAGATGGTTAT GGTAATGCTTCAGCCTTCTGATCTCTTGTTACTTTCTCTTGTTTTTGGTATTCTCTGCATTTCTATGATGATGTGTTATG TCTGAACAGATATTGAAGTGGAATTTGAATTGGTAGTTTCTAAGTGCTGGATCTAATCTTGCAACTGGTTTTTTACTTTA TGGGGGATTTGTGTGAGCTTAAAGTTTTGGTCTTTTGGGTTCATTTGTCATTTGAATTAGTGGGTTTTGCTTAGAGAAAC AAAATTTGGGTTCTTGTTGAGGTCTAATTAAGGTTTTGTTACTCAAGTTGTAAGAGTCATAGAAGGGTAAAGGTCCTTTA TTGTGTTGCATGTCCTCTGATATTAGACAGTTGCTTTTCCCTGGTTATATTTTGTTTACATGCCTCATTTCAATGACAGC TAGCTTGTGTCCTTGTCCATCACTGATGAGGGGTGTTGGTAGGATATCTGATCATTTTGTCAATAGTTTAGAGATTGTAA TGCCATAGATATGTTAAGAAGTTGTGTATGAGTTCTGTAGTTGTGTTTAGCCTTCGATAGAAATGGATAGTCAATGGGTT TTGGGTTTTTGGGACTTGAGACACTGCAACTTTGAATTCCAATAATATCGAAATTATTGTTAGTCTTGCTGAATTTAAAT GAATACAAAGATCAATGTAGAGACTAATTCCAACATGTTAAGATTTAGATATTGTAAAGTAATTGTGTACCTGGTGCGTG TCATTGAGGGATCTATAGTCGTCTTCTCTGTTTTCACAGTGGAAGCATGAATGTAAGAGAACAAACAATGCAACCTACTG TGTGTGTGTGTGTGTGGAGTGTATTAGGTGAGAGTATGTTCTCACTAGAGGAACTCATCTTGACCATACAACTATAAATT GATGGTCAAGATTAATGTCTATTGCCTCTCACTACATATGCCTCTTGCCTGTGTGTGTTTGTGTAAATATGTAAAGATAT TTGACTTCTGGTAGTTTTGCAAACTTATTCTTAATGCATGTTTATAAACTTATTACAAAATTGCTCAGTGGAAATCGTGT ATGACATAAGCAATATAGAATAGCTTTTAGGCTGTACACACTAGTTTGTAGACGGAAAATGCTGAAGCAAACAAACTGAT AGATTGGAAACATTGAATTGCAGCATAATTGATGTTTTAATGCTTTGCATTTGGGCTTTGTGTAAATTGCAGCTTACTGT GTTGTTGCGAAGGAATCTGTTAGCAAGCAAATCTCTATTGCTTTCCTTGAACGGGTCAAAGCTGACTTTAAGAAAAGATA TGGTGGTGGAAAAGCTGATACAGCTGTTGCCAAAAGTCTGAACAAGGAGTTTGGGTAATATTCATTTTGTTCTGGGCATG GTGTTGATACCTCAATCCTTGGATAGACATGTATAGAAAGTTTGATAATATTGATGACAATTGCAGACCAGTTATGAAAG AGCACATGAAATATATCATTGATCATGCTGAAGAGATCGAAAAGCTGATAAAAGTGAAGGCTCAAGTTTCAGAAGTTAAA AGTATCATGTTAGAGAATATAGACAAGGTACTGAATTGCTTAGGAGTAAGAATTGGAATTTTGTATTAAAAAAAATTCCT TGCATTGTACTCTTTTTTGTATGTGTTACTATACTCTTCTCAGTTGCGTTGTTTGAAGCATTATTTAAGCTGGATGAATT GATTGCAATATTATGTATACTTTGTCACCTTATTTTTGTTATGTGTGTTTTCACTTCAGGCTATTGACAGGGGAGAAAAT ATGACTATTCTAGCAGACAAGACAGAGACATTGCGCTCACAGGTAGGCTGTGACTAAGGTTATACAAGTTTTTGTTTTTA AATTAAGCTTTCTACGGCTGAAAGATTTTATGGTTTTCAGGCTCAAGATTTCAGAAAGCAAGGGACACAAGTTCGTCGGA AGATGTGGTATCAGAACATGAAAATTAAATTGGTTGTCTTTGGAATTTTGTTGTTTTTGGTCCTGGTTATCTGGCTTTCT ATATGTGGTGGATTTGACTGTTCAAACTAGCAAGAATTGAAAGTTCACAGTTTTATTTATTTATAAGTGGTTTTTAAGTG GATAATTGGCAATTAGAGGGGGAAAATCTTCCTTCTTTGCTGGTTGATGATGATATAGGGTGTACATGTTCTTGGAAATT CTTGATGGGAGGGAGAGGGGACTGTCATTGTATGATGTGATGGACTGTTTGATCTACAAAATGTGTGTAAGTTTCATTTG TAATATATGTGTCCTTTTTTCTTACTACCAATCTTGGTTGACAACCTCTTAGCATGCAACCTTCTTCGGCAAAGCATTGT TTACATTTCCATCATTTTTTGTTTCGCATTGAGCTTCGGGTTTCATATTGTGTTATAACATGTTTGGATCAGTTTCATTG TCTCATAATCAATTTTGGCGCCCAAAATTTACTCACAGAATCTCCCCCAAAAATTGATTTTGGCTTCAAGAGTCCATTAT AGAAGATTTTCC
CDS sequence (LotjaGi6g1v0248900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTCAGGAATCGTTCATATACAGCTTCGTGGCTCGTGGGACGATGGTGCTAGCTGAGTACACCGAGTTCACTGGGAA CTTCCCTGCCATTGCAGCTCAGTGTCTCCAGAAACTAACCTCTTCCAACAACAAGTTCACCTACAACTGTGACCACCACA CCTTCAATTTCTTGGTGGAAGATGGTTATGCTTACTGTGTTGTTGCGAAGGAATCTGTTAGCAAGCAAATCTCTATTGCT TTCCTTGAACGGGTCAAAGCTGACTTTAAGAAAAGATATGGTGGTGGAAAAGCTGATACAGCTGTTGCCAAAAGTCTGAA CAAGGAGTTTGGACCAGTTATGAAAGAGCACATGAAATATATCATTGATCATGCTGAAGAGATCGAAAAGCTGATAAAAG TGAAGGCTCAAGTTTCAGAAGTTAAAAGTATCATGTTAGAGAATATAGACAAGGCTATTGACAGGGGAGAAAATATGACT ATTCTAGCAGACAAGACAGAGACATTGCGCTCACAGGCTCAAGATTTCAGAAAGCAAGGGACACAAGTTCGTCGGAAGAT GTGGTATCAGAACATGAAAATTAAATTGGTTGTCTTTGGAATTTTGTTGTTTTTGGTCCTGGTTATCTGGCTTTCTATAT GTGGTGGATTTGACTGTTCAAACTAG
Protein sequence (LotjaGi6g1v0248900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQESFIYSFVARGTMVLAEYTEFTGNFPAIAAQCLQKLTSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIA FLERVKADFKKRYGGGKADTAVAKSLNKEFGPVMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENMT ILADKTETLRSQAQDFRKQGTQVRRKMWYQNMKIKLVVFGILLFLVLVIWLSICGGFDCSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 127 | 127 | 1.4E-43 | – | |
| PANTHER | 1 | 220 | 220 | 3.7E-137 | – | |
| PANTHER | 1 | 220 | 220 | 3.7E-137 | – | |
| Phobius | 1 | 193 | 193 | - | – | |
| SUPERFAMILY | 6 | 121 | 116 | 2.72E-28 | ||
| CDD | 7 | 120 | 114 | 4.31838E-28 | – | |
| ProSiteProfiles | 10 | 114 | 105 | 26.553 | ||
| SMART | 31 | 113 | 83 | 2.6E-24 | ||
| Pfam | 32 | 111 | 80 | 5.1E-20 | ||
| SUPERFAMILY | 126 | 192 | 67 | 1.52E-20 | – | |
| Gene3D | 128 | 214 | 87 | 6.0E-26 | – | |
| Pfam | 129 | 215 | 87 | 1.4E-29 | ||
| CDD | 129 | 188 | 60 | 4.84533E-23 | – | |
| ProSiteProfiles | 130 | 190 | 61 | 17.484 | ||
| PRINTS | 135 | 154 | 20 | 6.9E-16 | ||
| ProSitePatterns | 148 | 167 | 20 | - | ||
| PRINTS | 155 | 174 | 20 | 6.9E-16 | ||
| PRINTS | 191 | 210 | 20 | 6.9E-16 | ||
| TMHMM | 194 | 213 | 20 | - | – | |
| Phobius | 194 | 213 | 20 | - | – | |
| Phobius | 214 | 221 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi6g1v0248900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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