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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0255500 |
| Transcript ID | LotjaGi6g1v0255500.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Importin subunit alpha; TAIR: AT4G16143.1 importin alpha isoform 2; Swiss-Prot: sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a; TrEMBL-Plants: tr|I1MGI7|I1MGI7_SOYBN Importin subunit alpha; Found in the gene: LotjaGi6g1v0255500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56824826..56828363) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCGCTCAGGCCCAATGCTAGGACCGAGATTCGCCGCAACCGCTACAAGGTTGCCGTCGACGCCGACGAAGGTCGCCG GAGGAGGGAGGACAACATGGTTGAGATCCGGAAGAGTAAGCGCGAAGAGAGCCTCCAGAAGAAGCGCCGTGAGGGTCTCC AAGCTCAGCAGCAGTTCGCCACTCCTCTTCAGTCTTCCTCCATTGTCGAGAAAAAGGTAATTAGGGCTCCATCGTGGACT CTGCTTTTTCGATTTTGTTGTTTGATCGATTGAGATTCTGTGATTTGAATCGATTGGATAGTTGGTTGTGAAAACGGTTG TGACGGTTGTGTGTGATTGTTTGTTGTTGCAGTTAGAGAGTCTTCCGGCGATGGTTGCTGGGGTTTGGTCGGATGATAAT AGCCAGCAGCTGGAAGCAACTACTCAATTTCGGAAGCTGCTATCCATTGGTAAAAATGGATTCTGTTTCTATGATCCTGT GTGTTGAAGTTGTTATGATTCTCATGAATCACTCTGTTTCTATGATTCTGTGTGTTGAAGTTGTTATGTTTGTTATGTAG AGCGTAGCCCTCCGATTGAGGAAGTTATCCAATCTGGTGTTGTGCCGCGTTTTGTTGAGTTTCTCGTTAGGGAGGATTTC CCTCAACTTCAGGTTTGTACTTTTTCGCTTCCGCATTTATACTTGTTAAGGTGTAGTGTAGACTGTGGGGTAGTTGGAAT TTTTTGTGTTGTTGATTAGTTATTTGTGTGACGTGTTGTTTGGTTAGTTTGAGGCTGCGTGGGCTCTCACCAACATTGCG TCCGGGACTTCGGAGAACACTAAGGTGGTAATTGATCATGGGGCAGTACCGATATTTGTCAAGCTGCTTAGTTCGCCTAG TGATGATGTTCGCGAGCAGGTATATTGATACTGAAATGCAGTAGCGCGGGCATTTTTGAATTTTTGAGTTTTTGTTGAGC TCTCTTTAACTATGAAGCTTTGAAATTTAGGCGGTGTGGGCGTTGGGAAATGTTGCTGGTGATTCTCCTAGGTGTCGAGA TCTAGTGCTCAGCCATGGTGCCCTGATCCCATTGTTGTCCCAGCTGAATGAGCATGCCAAACTTTCAATGCTGAGAAACG CCACGTGGACCTTGTCAAACTTCTGCAGGGGCAAGCCTCAGCCTCCATTTGAACAGGTAGTTGTCGTTTTCGTTAATTTA AACCCAACGGGCCTCAGCCTCCACGTGGACCTTGTCGTTTTCGGTTAAAGGGCTTCTGTCTGTATATTTATATTAATACT AGAATATTTGATGGGCAGGTGAGGCCAGCGCTTCCAGCTCTTGAGCGTTTGGTTTTTTCCAATGATGAAGAGGTCCTGAC TGACGCATGCTGGGCGCTATCTTATCTTTCCGATGGAACAAACGACAAAATCCAAGCAGTTATTGAGGCAGGTGTATGTA GCAGATTGGTTCAGCTTCTTCTGTGAGTATTAATTCTACTCTACTCGCTCGACAAAGATTCTGTTATTTCAATTTTGGAT TGCTTTGGCCCTAAACGTGTATCCATGTTTTGAAGGCACCCGTCTCCTTCCGTGCTGATTCCTGCACTTCGCACAGTGGG AAATATTGTTACTGGAGACGATATGCAGACTCAGGTATTATTTGTGAACAGTTCTATTAATTGCTTGCTATCTTTTTATT CTCTTATTAAATATAAGGTTTTCTGTGTAAAACACTAAAAATTAGTGTTATATAAGTATTTTTCGGAAAATTTTTTATTA AAAAATTTATATAACTTCACCCGAACTGTTGGTACTTGGTAGTTGGTAGGTTAGTTTTGCTTGTCTAATTTGATTAATTA GCTCAAGCACTGATGCTATAATTTGGGGCTAATGGAGCTTCATACCAAATTCCAGAGTAACTACATAGGTCAGAAAAAAG TGAACAGTTAGTTATATTGATATTGTTAGTCATTATCCACAATGAAATTCACCTACCTCTTTCATGGCTTTTACCACCTA CATATGCCATTTATACCACAACTAATTATTACCAAGAATCAATAATTATTTTCCTTTGATGTTTTTGTGCTTGTGTCATT ACTCATTAGTGGGAATTTCCTTATTTTCTGGAACTATTTTCATTAGGCTATTATCAATCATGGTTCACTCCCGTGCCTTT TGAGCCTGTTGACGCAAAATCATAAAAAAAGTATCAAGAAAGAAGCTTGCTGGACTATATCAAACATTACAGCTGGAAAC AAAGAGCAGATACAGGTGCTTCACTGCTTTATAAAGAATTCATTTTTTATTGTTTATGCTTTTCTTTTATTTTGATGTGG TAGTATATATGCTTGCATATTTTATTGAATTTCTCAATGGAGTTATTGACCTTTTGAAGTTTATGAGTGTTCCAAGTTTC TTATTGACCTGATGACCTCTTATTGTGTTTTACTGTTGCTTTGGTCTTGTCATATGGATCGTTATGCTTTTTTAACTTGG AGATGTGGTGCAGTGTAATAATAACCGGCTTAAACATATTTAGTTCTCAGGTTAAACCGATTGGAGAAGATAAATTAGAG AATGATGATTGACACGTTCTCAACTCCATTCTATGTACAAAAACATAATGTATAGTGAATATACTGTGGTGTGCCAGTGA TCTTTGGCATTGTGCTATCTCATAAGGATAATAATTGAGTATGAGTCGAATGTAAGCCCTTGAAGTTTGACGCATCAACT GATTGACCGAATCTTATATTTTTGTTTCACATGACGAACATTTTTAAAATTTGTTCCAAGTACATCATTGAAGGAAATCT TCTGTCTTGCTGGAAGCCATTGATGGTTATATTTTGTTTGGGATCGTGGCTATGTTTTATCAGAATTTTATTGCAAAACA TAAGATTTTCTATGGGCTTATTTGTTGAAAAAGCTCTCTGAACTTTACATTTTATGTATGCAGTCTGTTATTGAAGCGGG TCTGATTGCTCCCCTTGTTAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAGGAAGCTGCTTGGGCAATTTCGAATG CTACATCTGGCGGTACCCATGAGCAGATCAAGTATGTGAATTTTTACTTTCAATTTTTTTTCACCCAGCTTCATAATGGT GATGTTGGGACTTGGGGGTTTATGTTATTAACTTGCTGTATGTCATTTAAGGTACTTGGTGAGCCAGGGTTGCATCAAGC CTCTCTGTGATCTGCTTGTTTGTCCCGACCCAAGAATCGTTACTGTCTGTTTAGAAGGTCTTGAGAACATTCTGAAGGTT GGGGAGGCTGACAAGAACTTGGGTAACTCTGGAGATGTCAACTTGTATGCTCAGTTGATAGATGAAGCTGAGGGATTGGA AAAGATTGAAAACCTGCAGAGCCATGACAACAATGAAATATATGAGAAGGCTGTTAAAATCCTCGAGACATATTGGTTGG AAGATGAAGATGAGACTTTGCCTCCAGGTGAAGGTGCTCAACCTGGGTTTAATTTTGGAACCAACGAGCTTCCAGTCCCA TCCGGTGGATTCAACTTC
CDS sequence (LotjaGi6g1v0255500.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGCTCAGGCCCAATGCTAGGACCGAGATTCGCCGCAACCGCTACAAGGTTGCCGTCGACGCCGACGAAGGTCGCCG GAGGAGGGAGGACAACATGGTTGAGATCCGGAAGAGTAAGCGCGAAGAGAGCCTCCAGAAGAAGCGCCGTGAGGGTCTCC AAGCTCAGCAGCAGTTCGCCACTCCTCTTCAGTCTTCCTCCATTGTCGAGAAAAAGTTAGAGAGTCTTCCGGCGATGGTT GCTGGGGTTTGGTCGGATGATAATAGCCAGCAGCTGGAAGCAACTACTCAATTTCGGAAGCTGCTATCCATTGAGCGTAG CCCTCCGATTGAGGAAGTTATCCAATCTGGTGTTGTGCCGCGTTTTGTTGAGTTTCTCGTTAGGGAGGATTTCCCTCAAC TTCAGTTTGAGGCTGCGTGGGCTCTCACCAACATTGCGTCCGGGACTTCGGAGAACACTAAGGTGGTAATTGATCATGGG GCAGTACCGATATTTGTCAAGCTGCTTAGTTCGCCTAGTGATGATGTTCGCGAGCAGGCGGTGTGGGCGTTGGGAAATGT TGCTGGTGATTCTCCTAGGTGTCGAGATCTAGTGCTCAGCCATGGTGCCCTGATCCCATTGTTGTCCCAGCTGAATGAGC ATGCCAAACTTTCAATGCTGAGAAACGCCACGTGGACCTTGTCAAACTTCTGCAGGGGCAAGCCTCAGCCTCCATTTGAA CAGGTGAGGCCAGCGCTTCCAGCTCTTGAGCGTTTGGTTTTTTCCAATGATGAAGAGGTCCTGACTGACGCATGCTGGGC GCTATCTTATCTTTCCGATGGAACAAACGACAAAATCCAAGCAGTTATTGAGGCAGGTGTATGTAGCAGATTGGTTCAGC TTCTTCTGCACCCGTCTCCTTCCGTGCTGATTCCTGCACTTCGCACAGTGGGAAATATTGTTACTGGAGACGATATGCAG ACTCAGGCTATTATCAATCATGGTTCACTCCCGTGCCTTTTGAGCCTGTTGACGCAAAATCATAAAAAAAGTATCAAGAA AGAAGCTTGCTGGACTATATCAAACATTACAGCTGGAAACAAAGAGCAGATACAGGTGCTTCACTGCTTTATAAAGAATT CATTTTTTATTGTTTATGCTTTTCTTTTATTTTGA
Protein sequence (LotjaGi6g1v0255500.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLRPNARTEIRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFATPLQSSSIVEKKLESLPAMV AGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHG AVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPPFE QVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQ TQAIINHGSLPCLLSLLTQNHKKSIKKEACWTISNITAGNKEQIQVLHCFIKNSFFIVYAFLLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 366 | 366 | 8.4E-207 | – | |
| PANTHER | 1 | 366 | 366 | 8.4E-207 | – | |
| ProSiteProfiles | 1 | 58 | 58 | 15.779 | ||
| Gene3D | 9 | 50 | 42 | 2.2E-6 | ||
| SUPERFAMILY | 12 | 367 | 356 | 1.36E-93 | ||
| Pfam | 12 | 96 | 85 | 4.3E-25 | ||
| Gene3D | 74 | 373 | 300 | 2.4E-155 | ||
| SMART | 106 | 147 | 42 | 5.0E-9 | ||
| Pfam | 107 | 147 | 41 | 2.4E-10 | ||
| ProSiteProfiles | 117 | 160 | 44 | 10.482 | ||
| Pfam | 149 | 188 | 40 | 1.2E-13 | ||
| SMART | 149 | 189 | 41 | 2.7E-11 | ||
| ProSiteProfiles | 160 | 202 | 43 | 12.127 | ||
| SMART | 190 | 232 | 43 | 0.043 | ||
| Pfam | 191 | 232 | 42 | 5.7E-9 | ||
| SMART | 234 | 273 | 40 | 0.038 | ||
| ProSiteProfiles | 244 | 286 | 43 | 8.592 | ||
| Pfam | 245 | 273 | 29 | 9.6E-7 | ||
| SMART | 275 | 315 | 41 | 3.9E-6 | ||
| Pfam | 276 | 314 | 39 | 6.8E-9 | ||
| SMART | 317 | 358 | 42 | 9.4E-9 | ||
| Pfam | 318 | 358 | 41 | 1.8E-10 | ||
| ProSiteProfiles | 328 | 363 | 36 | 8.697 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein import into nucleus | The directed movement of a protein from the cytoplasm to the nucleus. | ||
| Molecular function | Nuclear import signal receptor activity | Combining with a nuclear import signal (NIS) on a cargo to be transported, to mediate transport of the cargo through the nuclear pore, from the cytoplasm to the nuclear lumen. The cargo can be either a RNA or a protein. |
Expression pattern of LotjaGi6g1v0255500.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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