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LotjaGi6g1v0256100.1

Overview

Field Value
Gene ID LotjaGi6g1v0256100
Transcript ID LotjaGi6g1v0256100.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Beta xylosidase; TAIR: AT5G49360.1 beta-xylosidase 1; Swiss-Prot: sp|Q9FGY1|BXL1_ARATH Beta-D-xylosidase 1; TrEMBL-Plants: tr|A0A1J7FUN8|A0A1J7FUN8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0256100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:56891281..56898246) extracted from Lotus japonicus Gifu genome v1.2.

GTTAAAATCTTATTTCTGTAATACACGTTAAATTCAATATGACAAATTCTAACTTCTTATTAGTGTTTGTGAACAACCAA AAGAAACATAGACACTTATAGCTTGTTGATAATGTTTGAGTTAATCTACGTGGAAACTCAATCAACAAACCTTGTATAGA AGACGCAACCTTCCTCTATATATACACAAACCCACCCCTCACTATCTCCATCATCATTCATCACTAGTCCTCACTTCCCC TTCATCCATTCAAATTATTCACCAAAATGTCTATTGATTGTTGCAATGGCAAAAAGTGCTTATGGGCTTTTGGGCTAGTG ACATGTTTGGTTGCCATGTTAATAGGGGCAGGGGAAGCAAGGGTGCCATTTGCGTGTGACCCCCAAAAAGGGTTAACAAG GGGGTTCAAGTTTTGCAGAACAAACGTGCCAATCCATGTTAGGGTGCAGGACCTCATAGGGAGGCTCACATTGGCGGAGA AGATAAGACTGGTGGTGAACAATGCCATTGAGGTGCCACGGCTCGGAATTCAAGGCTATGAGTGGTGGTCGGAGGCGTTG CACGGCGTTTCTAATGTGGGGCCAGGGACTAAGTTCGGTGGGGCCTTCCCCGCCGCCACCAGCTTCCCTCAGGTTATCAC CACCGCTGCTTCATTCAATCAGTCGCTGTGGAAAGAAATTGGACGGGTGAGATTAATTAATTCATTAATTATTGTTGTTC TTGCTTTTTCATCCATTGGTTTCATATAGATGATAAATTATTTAAATAATTGAGAGGTGATTCTTTGGTTCTCCTTTTTG GGCGTTCTTGATGATAGTAATAATAAACTAATCATATATCTACTCACGATGGATGCATCATATTCATAGCATATTATATG TGTTGCCTTTGGCATCCAGAATGGGTAAATAGCTTTTATAACAAGAGGCTAAATTCAAGTACATGCACTACTTACCTTTC ACTTTCATTCATGTATGTTTCTTTCATATGTTTGAAATATCCTAGAATTTTATCATATAAGATAAAGATCAAAACCACAT TTCTTAGCTCTCACGACACTCGCGACACTTTATGTTTAACATAGTTTCTGACACATACAAATTGCATAGTTTGTTAAAAA AAAATTATACGATTCGTAGCGATCAGAAACCGTTATAAGTTGTAAGTGTTACAGGTGCATGTCATCAGAAATAGAAATTT AGTATATATCAATTATAACTATTTTATTATATAAAAATTATTTTATTTATCTTTTATTCATATATATATTGAACATCTGG AATCATATTATAAATTACGAATGAAAATCAATCTTTCTAGCTATAATAAATTAAATGAAATATATATTTACATGAAACTG TCAATTTTCATTTTAATTAATGAAACTGTTTATATCCATGAAAATAATTTAATTTCTTGTCCTCAATTTTGATTAGTTTT AATCTTTAAACAATGTATAACCACTGTTTGTGTTTGACTCACTGATAATATATGAGCTGACAATAAAAAAAATGAAAAGG TGTCTAGACATGGGCCTCAAGTTTTTATTTATAATTACCAAAACATCTGAATGACGACGAGAATTTGTTTTTGTAAACAA TAAATAACAATCAAACTATCAATTATTTGTATTTAATTATCGTCCAATCATGTGAGCTGAAATTAATGATTCATTTTATT TGTCGCTGAACACTGGCGGAAGCACAGGGGTGACTTCCCTGTGCTTAGTCACCCCTGGCTTCTTGAAATTTCTAAAGAAT TTTTTTAAGCAAAGCATTTAAAGGTAACTAGGCAAGAAGCAGAGAGAGTAACAGTGTGTGACAGTGTGAGCACCACTGTT TACACACACAGCACCGGCAGCTCCTCTTTTTATTTTATTTTTCTTTTAATAATCACATGGAATGGGACCCACACATCCAA AGTTATAATATTTGAAAAACATAACATTAAGATAGTAGTGAAGCCGTGTTTTTCTAATGGAAGGAAACAGAAGCAGGAGA AATGAAAAAACAAGGCAAAGAGAAGAAAACTTATTGCCTTGTTTGGATTTGTTTAATTAAAGAAACAGCACAAAGAAAAA GAACGAGATTTTGCTTAGCTAGTACAATATTTTAGAACCTCTCAATTTTCTCTCTTACTCTTCACTTTCTCATGTATGAC TTTTTATGGATATTCAAATTTTCATGAGTTCAAACTAGAATTTATTGGTTCAATTCTCATTTTTGTTGCTTAATTGGTCT CATTATATGAGATTGAATTTGTGGTGTTTGTGTTTTGTGAAAAAAAAGTGATAAAAATTATGCACATCTACTGTTTGTAA AAAGTCTCCTATAAGATTCAGTGGACTTTTGTGTTGATAATTTTTTGGTGCGGAAGAGATATTTTGTGGTTCTTCTCTTC AATTATCTACAAGATAGTCTTTTTTGTTCTCACCAGAATACTTATCAGCCGGTTAGTATCTCTTGCACCCAAACTAATAT GATATTTCTTATGCTTATATAAAATATCTCTTGCATTCAAACTAATTTTTTGTTCTCACTAATTTTTTTTTTCGCTTACC CAATTTTGGCAATTTTTATTTGATAAAAATTGAAATTTTCTTACAAAGATCTCAGTCCCCCCTTCTGAAATTCCTGGCTC CGCCCCTGGCTGAACATAAAAATAAAAAAGAGGAGAGAAAAATATGGTTGTTGTACCTGGCTACTTGTCACTTATTTTGT CTGTTAACATAGAAATTAAGTGGCAAAGTGTGTCCCATGTGCCATGCATGCATTAATTGGAATATATTTATGAATAATGT CAATCAAGTCATTTTATATGTTTAGAAAATGGAAATTGAGGATGGTACGTAGTGTTGAAAATTCATCATAAACATGTTGA TTGATTCGTCAGCTACAAGTGGCTAAAACAAAGTCCCTCACGCCATTATTTCATTAACTACGAAAGCAACTCATCTAGAT ATATGGTGGTTTTGTTTGGTTAATTGTCAATATTGTAGCACTTTCCACTAAGGTTTAATCACTCTCCACGTCATTAATTA ATTATGTATGTATTAAGATTGGAATATTAATTAACTAAGCTTTCGGTGGCATCAATACATCCTTTCATTTCTTAAATTGT TATCTTCGGTTAATTAAATATAGGAATTAAGCAATTATAGGCTATGTTTCCATATCATATATTAATTGTGGTTAGTAAAG CATAAAAACTAATCAACCAAATTTGTATGTTTGATGTTGTTCAGTGAAGTAAAAAAGAGTCTATCATCTTTTCAATCTTT TCTTGATTATTGTTTAGTGAATAATTGAACAAGCACTAGGTGTTTGATGTTGCCCCCACCAAACACCTCTACTTGCAAAT GTCCTTCCTCTCACGGCTTCTTTTTTTCTTTTTTTTTTCTTTTTCAGTCCATGCATGCATGTATATACGTTAAATATTGA AAAGGAAAAATCCCTAAATTAAATATTTATTGGAAGATATTAATCAATTAGTTAGACTTCGTGAGGTTTGGATCCCAGAA AATGCATGTCAACATTAATGGAGTGTTCTGTTTGTTTCTTAGTGCTAAAAGTTATTCTTTTATTCCGGTTGGTAGTTTAA CCAAATGACGTAGCTAGAGGTGAAAGGAAAAAATGACTATGTTGATGAAAGAGAACAATTCTGAGTTTAATAGGGTATCC GCAATTAAAAATACAATAGAGTCCATTTTGAAATTACATTTATATATTTACTTGCAGGTGGTGTCTGATGAGGCAAGAGC TATGTACAATGGTGGAGCAGCAGGATTGACGTATTGGAGCCCGAATGTGAACATTTTCCGTGACCCCCGGTGGGGCCGTG GCCAGGAAACTCCCGGTGAGGACCCAACCTTAGCTGCGAAATACGCCGCTAGCTATGTCCAGGGACTCCAAGGTGATGGT GCCGGTAACCGCCTCAAGGTTGCTGCTTGTTGCAAGCACTACACTGCCTATGACCTTGATAACTGGAATGGTGTGGACAG GTTTCATTTCAATGCCAGGGTATGTATGTATGGGCCAAATATTTTTATCTCTCATAGCTAGCTATATGGGACCATTTATT TTCTTGATTTAATACAGAAATTATATTTATTTTTATCAAATTTTATTTCATACACCTAATTGATTGAGCTATAATCCGAA GTGGTATAGGCTGTCAGTTGGTAAAATCATTGCTGGAACTTTTCATGTGGCTTGTTGCTCGGTGACTTAAGCTGCGTGGA CATACAAGTCATCTAATGCCTTGTGTGGATTTCTTTCTTGCTTTTGTCATTCTCTTTCCTTTGGATCAAATTAGTAGTTT CCATAAATGCAAGAAGTGATGTAGCAAGTTGTTGATAAAGACTTGTTACCACTTGCAATTGGTTAGGATAAGAGAAAAAG ATGCCATCCAAACTACCAATTCGATCAGCTACCACTCATGCACCATATACTAAATTAAAACCATTTATTTTCCTTTGCCA TTATTATTTTTTGTGTCCTATATCGATGTGACCTTGATGGAAAAGTAGGAATATAATCCATCCAAAAAAATGAAAATGTT TTTCCCTTTGTTTTTTTGCATTTAAGAATATGGATAAAGCAAAGACTCAAAGGCCCATGGGCTGAAACTAAAAATATTTG GGCTTTTGGGTTGTAACAGGTTAGCAAGCAGGACTTGGAGGACACATATAATGTACCATTCAAAGCCTGTGTGATGGAAG GCAAAGTAGCAAGTGTGATGTGCTCTTACAATCAGGTGAATGGAAAGCCTACATGTGCTGATTCTGATCTTCTTCGCAAC ACAATCCGTGGCCAGTGGCGTCTTAATGGGTAAAGCCCATTATGATAACTATGCATTTTCCTTCATTATTATTTGTGTTT TTTTTATTTCATTTTTCACTAGCTAACATGGTGGCTTCTTTCTTATCTTATAAAATAGGTACATAGTCTCAGACTGTGAC TCTGTTGGAGTATTCTATGACAACCAACACTACACCAGAACACCTGAAGAAGCAGCTGCAGAAGCAATTAAAGCTGGGCT GGATCTTGATTGCGGCCCATTCTTGGCCCTCCACACTGATGCAGCCATTAAGAATGGGCTCATTACAGAAAATGATCTTA ACCTTGCCTTGGCCAACCTTATTACTGTCCAGATGAGATTGGGCATGTTCGACGGCGAGCCATCGGCCCATCCATACGGG AACTTGGGCCCGAGAGATGTCTGCACCCCGGCCCATAACGAACTTGCCCTTGAAGCAGCTAGGCAGGGCATAGTTCTGCT AGAAAACAAAGGAAATGCCCTGCCATTATCCCCTACTCGACACCGCACTGTAGGAGTCATTGGACCTAATTCAGATGTTA CTGTTACAATGATAGGAAACTATGCTGGTTAGTTATTTAGTAACCCAATTCATCATCATATCATATATATGTGAATATAT CATGTTCATAGTTTATTTATATTGTACATTTTGTTTTGTTTTAGGTGTGGCATGTGGTTATACTACACCATTGCAAGGGA TTGCTAGATATGTGAAGACCATTCATCAAGCAGGATGCAGGGACGTCAGTTGCCGCGGAACCGAACTATTTGGAAACGCA GAAATTGTGGCTAGGCAGTCTGATGCCACAGTGGTAGTGGTGGGCCTTGACCAGTCCATAGAAGCTGAGTTCAGAGACAG GGTTGGGCTTCTATTACCAGGCCACCAACAAGAGCTCGTGTCTAGAGTGGCCCGGGCCGCAAGAGGCCCGGTTGTGCTGG TCATCATGTCTGGTGGGCCTGTTGATGTCCAATTTGCTAAAGATGATCCTAAGATCAGTGCCATTTTGTGGGTTGGTTAC CCTGGCCAAGCTGGAGGAACTGCCATTGCAGATGTGATTTTTGGTAGAACAAACCCTGGTAAAGTACTCACACACTAGTA TTATTAAATCATGAAAAACAGACAGACACTTCAAATGTTGTTACATGTGATCTAATTTATGTTTTTGGTTGGGCTTTTCT TGTAGGAGGAAGGCTACCCAACACATGGTACCCTCAGTCCTATGTGGCTAAACTACCCATGACAAACATGGACATGCGAC CAAACCCAGCATCAGGGTACCCAGGAAGGACCTACAGATTCTACAAGGGCCCAGTGGTGTTCCCATTTGGGCATGGACTG AGCTACAGTAGGTTCACACATACCTTAGCAGTTGCCCCAGAACAGGTTTCAGTCCCCATTGCAAGCCTCCAAGCCTTTAG AAACTCAACCATGTCAAGCAAAGCAGTGAAAGTGAGTCATGCCAAGTGTGGTGCCTTGAAAATGGGATTCCATGTTGATG TGAAAAATGAAGGCTCCATGGATGGAACTCACACCCTTCTGATTTTCTCAACTCCACCACCTGGAAAATGGTCTGCAAGT AAACAATTGGTGAGCTTCCACAAGACATATGTTCCTGCTGGCTCAAAGCAAAGGGTCAATGTTGGTGTTCATGTGTGCAA GCATCTTTCAGTTGTGGATGAGAATGGGATTCGAAGAATCCCAATGGGTGATCATGAACTCCATATTGGTGATGTCAAAC ACACAATTTCAGTCCAAACTCTGGAAGAACAAGATATCAAACATTAACTGTCAAACAACTTTGACAGACACAGCTGAATT TTACAAATAGCATTAATGATTCCTCAAATGAGTTGAAAAATACAAAGAATAATAATAATGTTGAAAAAGAACAGGTTGCG TGCCTGCAAATGTAAAATAAGGAAATAGGTACTGGTCATTTCTAAGCCAATTATTTGTGCAAAAGTGTGCAATTGTTACT ACTCTGCAAGTGTAAAATAGGGAAATATAGGTGACATTGTAAGCTAGTCATCGGAGTAAGTACACTTTGTAATTTCATAT TGTGTAAGAGGTTATTGAGGAAATTTGAAAGTTCTAATCCATTTTCGTTTCATCTGTTCTCTCAAAATTGAAAATTCAAT GTCATG 

CDS sequence (LotjaGi6g1v0256100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTATTGATTGTTGCAATGGCAAAAAGTGCTTATGGGCTTTTGGGCTAGTGACATGTTTGGTTGCCATGTTAATAGG GGCAGGGGAAGCAAGGGTGCCATTTGCGTGTGACCCCCAAAAAGGGTTAACAAGGGGGTTCAAGTTTTGCAGAACAAACG TGCCAATCCATGTTAGGGTGCAGGACCTCATAGGGAGGCTCACATTGGCGGAGAAGATAAGACTGGTGGTGAACAATGCC ATTGAGGTGCCACGGCTCGGAATTCAAGGCTATGAGTGGTGGTCGGAGGCGTTGCACGGCGTTTCTAATGTGGGGCCAGG GACTAAGTTCGGTGGGGCCTTCCCCGCCGCCACCAGCTTCCCTCAGGTTATCACCACCGCTGCTTCATTCAATCAGTCGC TGTGGAAAGAAATTGGACGGGTGGTGTCTGATGAGGCAAGAGCTATGTACAATGGTGGAGCAGCAGGATTGACGTATTGG AGCCCGAATGTGAACATTTTCCGTGACCCCCGGTGGGGCCGTGGCCAGGAAACTCCCGGTGAGGACCCAACCTTAGCTGC GAAATACGCCGCTAGCTATGTCCAGGGACTCCAAGGTGATGGTGCCGGTAACCGCCTCAAGGTTGCTGCTTGTTGCAAGC ACTACACTGCCTATGACCTTGATAACTGGAATGGTGTGGACAGGTTTCATTTCAATGCCAGGGTTAGCAAGCAGGACTTG GAGGACACATATAATGTACCATTCAAAGCCTGTGTGATGGAAGGCAAAGTAGCAAGTGTGATGTGCTCTTACAATCAGGT GAATGGAAAGCCTACATGTGCTGATTCTGATCTTCTTCGCAACACAATCCGTGGCCAGTGGCGTCTTAATGGGTACATAG TCTCAGACTGTGACTCTGTTGGAGTATTCTATGACAACCAACACTACACCAGAACACCTGAAGAAGCAGCTGCAGAAGCA ATTAAAGCTGGGCTGGATCTTGATTGCGGCCCATTCTTGGCCCTCCACACTGATGCAGCCATTAAGAATGGGCTCATTAC AGAAAATGATCTTAACCTTGCCTTGGCCAACCTTATTACTGTCCAGATGAGATTGGGCATGTTCGACGGCGAGCCATCGG CCCATCCATACGGGAACTTGGGCCCGAGAGATGTCTGCACCCCGGCCCATAACGAACTTGCCCTTGAAGCAGCTAGGCAG GGCATAGTTCTGCTAGAAAACAAAGGAAATGCCCTGCCATTATCCCCTACTCGACACCGCACTGTAGGAGTCATTGGACC TAATTCAGATGTTACTGTTACAATGATAGGAAACTATGCTGGTGTGGCATGTGGTTATACTACACCATTGCAAGGGATTG CTAGATATGTGAAGACCATTCATCAAGCAGGATGCAGGGACGTCAGTTGCCGCGGAACCGAACTATTTGGAAACGCAGAA ATTGTGGCTAGGCAGTCTGATGCCACAGTGGTAGTGGTGGGCCTTGACCAGTCCATAGAAGCTGAGTTCAGAGACAGGGT TGGGCTTCTATTACCAGGCCACCAACAAGAGCTCGTGTCTAGAGTGGCCCGGGCCGCAAGAGGCCCGGTTGTGCTGGTCA TCATGTCTGGTGGGCCTGTTGATGTCCAATTTGCTAAAGATGATCCTAAGATCAGTGCCATTTTGTGGGTTGGTTACCCT GGCCAAGCTGGAGGAACTGCCATTGCAGATGTGATTTTTGGTAGAACAAACCCTGGAGGAAGGCTACCCAACACATGGTA CCCTCAGTCCTATGTGGCTAAACTACCCATGACAAACATGGACATGCGACCAAACCCAGCATCAGGGTACCCAGGAAGGA CCTACAGATTCTACAAGGGCCCAGTGGTGTTCCCATTTGGGCATGGACTGAGCTACAGTAGGTTCACACATACCTTAGCA GTTGCCCCAGAACAGGTTTCAGTCCCCATTGCAAGCCTCCAAGCCTTTAGAAACTCAACCATGTCAAGCAAAGCAGTGAA AGTGAGTCATGCCAAGTGTGGTGCCTTGAAAATGGGATTCCATGTTGATGTGAAAAATGAAGGCTCCATGGATGGAACTC ACACCCTTCTGATTTTCTCAACTCCACCACCTGGAAAATGGTCTGCAAGTAAACAATTGGTGAGCTTCCACAAGACATAT GTTCCTGCTGGCTCAAAGCAAAGGGTCAATGTTGGTGTTCATGTGTGCAAGCATCTTTCAGTTGTGGATGAGAATGGGAT TCGAAGAATCCCAATGGGTGATCATGAACTCCATATTGGTGATGTCAAACACACAATTTCAGTCCAAACTCTGGAAGAAC AAGATATCAAACATTAA 

Protein sequence (LotjaGi6g1v0256100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSIDCCNGKKCLWAFGLVTCLVAMLIGAGEARVPFACDPQKGLTRGFKFCRTNVPIHVRVQDLIGRLTLAEKIRLVVNNA IEVPRLGIQGYEWWSEALHGVSNVGPGTKFGGAFPAATSFPQVITTAASFNQSLWKEIGRVVSDEARAMYNGGAAGLTYW SPNVNIFRDPRWGRGQETPGEDPTLAAKYAASYVQGLQGDGAGNRLKVAACCKHYTAYDLDNWNGVDRFHFNARVSKQDL EDTYNVPFKACVMEGKVASVMCSYNQVNGKPTCADSDLLRNTIRGQWRLNGYIVSDCDSVGVFYDNQHYTRTPEEAAAEA IKAGLDLDCGPFLALHTDAAIKNGLITENDLNLALANLITVQMRLGMFDGEPSAHPYGNLGPRDVCTPAHNELALEAARQ GIVLLENKGNALPLSPTRHRTVGVIGPNSDVTVTMIGNYAGVACGYTTPLQGIARYVKTIHQAGCRDVSCRGTELFGNAE IVARQSDATVVVVGLDQSIEAEFRDRVGLLLPGHQQELVSRVARAARGPVVLVIMSGGPVDVQFAKDDPKISAILWVGYP GQAGGTAIADVIFGRTNPGGRLPNTWYPQSYVAKLPMTNMDMRPNPASGYPGRTYRFYKGPVVFPFGHGLSYSRFTHTLA VAPEQVSVPIASLQAFRNSTMSSKAVKVSHAKCGALKMGFHVDVKNEGSMDGTHTLLIFSTPPPGKWSASKQLVSFHKTY VPAGSKQRVNVGVHVCKHLSVVDENGIRRIPMGDHELHIGDVKHTISVQTLEEQDIKH 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 10 10 -
SignalP_EUK 1 31 31 -
Phobius 1 31 31 -
Phobius 11 22 12 -
TMHMM 12 29 18 -
PANTHER 16 772 757 0.0
PANTHER 16 772 757 0.0
Phobius 23 31 9 -
Phobius 32 778 747 -
SUPERFAMILY 48 401 354 4.74E-90
Gene3D 57 377 321 2.6E-88
Pfam 115 360 246 3.8E-39
PRINTS 120 139 20 3.5E-6
PRINTS 208 224 17 3.5E-6
PRINTS 282 300 19 3.5E-6
Gene3D 387 633 247 1.6E-63
Pfam 402 632 231 2.8E-52
SUPERFAMILY 402 635 234 1.96E-50
Gene3D 646 773 128 6.5E-10
SMART 694 763 70 1.2E-8
Pfam 698 761 64 4.4E-9

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0256100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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