Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0268300 |
| Transcript ID | LotjaGi6g1v0268300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|Q40665|TBB3_ORYSJ Tubulin beta-3 chain; TrEMBL-Plants: tr|C5NU06|C5NU06_LOTJA Tubulin beta chain; Found in the gene: LotjaGi6g1v0268300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:58330866..58333177) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGAGAAATCCTGCACATCCAAGGAGGCCAGTGCGGGAACCAGATCGGCGCAAAATTCTGGGAAGTCATCTGCGACGA GCACGGGATCGACCACTCCGGCAAGTACAACGGCGATGCTGAGCTTCAACTCGAACGCATCAATGTCTACTACAACGAAG CCACCGGTGGAAGGTACGTTCCACGCGCTGTCCTCATGGATCTGGAGCCCGGCACCATGGACTCCGTCAGATCCGGTCCG TTTGGCCAGATCTTCCGCCCTGATAACTTCGTCTTCGGTCAATCCGGCGCCGGTAACAATTGGGCGAAAGGTCATTACAC CGAAGGCGCTGAACTCATCGATTCCGTTCTCGACGTTGTTCGTAAGGAGGCTGAGAATTGCGATTGCTTGCAAGGTAACT GAATAACTAACTCACTAACTAACTTCAATCGATTGCGTTGTTTCTGTTTGGATTTGTTACGATTCGGTTATTCCGTTGTG ATTTGTGGTGTTCTGAGCGGGTTGGTTGTGTTGACAGGGTTTCAGGTGTGCCATTCTTTGGGCGGTGGAACTGGCTCCGG CATGGGGACGCTTCTTATCTCGAAGATCCGGGAGGAGTATCCGGATCGGATGATGTTGACGTTTTCGGTGTTTCCTTCCC CGAAGGTGTCTGACACGGTGGTGGAGCCGTATAATGCTACGCTTTCAGTGCACCAGCTTGTGGAGAATGCGGATGAGTGC ATGGTGTTGGATAATGAGGCTCTCTATGACATTTGCTTCAGGACTTTGAAGCTCGCTACACCGACATGTAAGTTTTTCGT TTCTTGTTTGAATCTTAGTTTGTTCAATGGTGTTTATGTTATTATGTATGAGACTCGATGCATGTTTAGGTGTAAAGTGT CCACAGGAAATTGTTATGGTTTTTGAGGAACATAAATTTGATGTTGTAGGCGATTGGACATGCTAGACATGGTAGAATTA GGAATTAACATGTTAAAGAGTAATTTGGGGCAGCACGTACTATGTAAAAGATGTTAGAATGTTGCTTTAGGTGATTTAAG CATGGATAAAACCAGATTGTGGAGGGTAATCTAATAGTTAGAGGCAGAGAGAGATGAAGAAAAAATAAAGATCAGTCTAT TAAGAAGGACTTAGATCTAAGTATATTATGATTAGATATAATTCATAATAAGATACTCTGGTGTAATTTGATCCATGTAT TGTGAAAAAAGGGTTTATTATTGTTACTGTTGCAATGCAGTTAATTGTTATCACCAGTTTTGTTTGTTGTTGTTATTGCT GCTGCCTGCTGCTGCTGCTGCATATGCATTTTCTGTAATACTCTGGCTGTTCTGGTGTACTTGTTTGCTACAGATGAGCA GTTAATGTTAAGTAATAATTGGCATATTGTTCTGGTTTTTCTCTCAATTCACAACTTGAATTGGGATTAACTGATTAAGT ATCATTGTATTGGTGGGACCATGGAGGTGTTTCAAGTGGATTTAGGTCTTGTGTCTTACTCATAGCTGGTGGTTATTGCT ATTTAACTTCTGCCATTGATTTGTTTTTCAGTCGCTTTCTCTGATACAATTGTATTTTGCTTTATTCCTCAATTTAGTTG GGAGTTCACTTTTCTTTTTCTTGTTTTTATTACAGTTGGTGACCTTAATCACCTTATTTCTGCCACCATGAGTGGGGTTA CTTGTTGTCTACGTTTCCCTGGCCAACTGAACTCTGATCTACGAAAGCTTGCTGTCAATCTCATCCCATTCCCTCGTCTC CATTTCTTTATGGTTGGGTTTGCACCTTTGACATCAAGAGGATCCCAGCAGTACCGTGCTTTGACAGTACCTGAATTGAC TCAGCAGATGTGGGATTCGAAGAACATGATGTGTGCCGCTGATCCACGCCATGGTCGTTATTTGACTGCTTCAGCAATGT TCCGTGGTAAGATGAGCACAAAGGAGGTAGATGAGCAGATGATCAATGTGCAAAACAAGAACTCTTCATACTTTGTTGAG TGGATACCTAATAATGTCAAGTCCAGCGTGTGTGATATCCCACCTAAAGGTCTTAAGATGTCATCCACTTTCATTGGTAA TTCAACTTCAATCCAGGAGATGTTCAGGAGAGTTAGCGAGCAGTTCACAGCTATGTTCAGGCGCAAGGCTTTCTTGCATT GGTACACTGGAGAGGGAATGGATGAGATGGAGTTCACCGAGGCTGAGAGTAACATGAATGATCTTGTTGCTGAGTACCAG CAATACCAGGACGCTACTGCTGATGAGGATGAGTATGAGGAGGAGGAAGAAGAGGAGCCAGTTGATGCTTAA
CDS sequence (LotjaGi6g1v0268300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGAAATCCTGCACATCCAAGGAGGCCAGTGCGGGAACCAGATCGGCGCAAAATTCTGGGAAGTCATCTGCGACGA GCACGGGATCGACCACTCCGGCAAGTACAACGGCGATGCTGAGCTTCAACTCGAACGCATCAATGTCTACTACAACGAAG CCACCGGTGGAAGGTACGTTCCACGCGCTGTCCTCATGGATCTGGAGCCCGGCACCATGGACTCCGTCAGATCCGGTCCG TTTGGCCAGATCTTCCGCCCTGATAACTTCGTCTTCGGTCAATCCGGCGCCGGTAACAATTGGGCGAAAGGTCATTACAC CGAAGGCGCTGAACTCATCGATTCCGTTCTCGACGTTGTTCGTAAGGAGGCTGAGAATTGCGATTGCTTGCAAGGGTTTC AGGTGTGCCATTCTTTGGGCGGTGGAACTGGCTCCGGCATGGGGACGCTTCTTATCTCGAAGATCCGGGAGGAGTATCCG GATCGGATGATGTTGACGTTTTCGGTGTTTCCTTCCCCGAAGGTGTCTGACACGGTGGTGGAGCCGTATAATGCTACGCT TTCAGTGCACCAGCTTGTGGAGAATGCGGATGAGTGCATGGTGTTGGATAATGAGGCTCTCTATGACATTTGCTTCAGGA CTTTGAAGCTCGCTACACCGACATGTGTAAAGTTTGGTGACCTTAATCACCTTATTTCTGCCACCATGAGTGGGGTTACT TGTTGTCTACGTTTCCCTGGCCAACTGAACTCTGATCTACGAAAGCTTGCTGTCAATCTCATCCCATTCCCTCGTCTCCA TTTCTTTATGGTTGGGTTTGCACCTTTGACATCAAGAGGATCCCAGCAGTACCGTGCTTTGACAGTACCTGAATTGACTC AGCAGATGTGGGATTCGAAGAACATGATGTGTGCCGCTGATCCACGCCATGGTCGTTATTTGACTGCTTCAGCAATGTTC CGTGGTAAGATGAGCACAAAGGAGGTAGATGAGCAGATGATCAATGTGCAAAACAAGAACTCTTCATACTTTGTTGAGTG GATACCTAATAATGTCAAGTCCAGCGTGTGTGATATCCCACCTAAAGGTCTTAAGATGTCATCCACTTTCATTGGTAATT CAACTTCAATCCAGGAGATGTTCAGGAGAGTTAGCGAGCAGTTCACAGCTATGTTCAGGCGCAAGGCTTTCTTGCATTGG TACACTGGAGAGGGAATGGATGAGATGGAGTTCACCGAGGCTGAGAGTAACATGAATGATCTTGTTGCTGAGTACCAGCA ATACCAGGACGCTACTGCTGATGAGGATGAGTATGAGGAGGAGGAAGAAGAGGAGCCAGTTGATGCTTAA
Protein sequence (LotjaGi6g1v0268300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MREILHIQGGQCGNQIGAKFWEVICDEHGIDHSGKYNGDAELQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRSGP FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTCVKFGDLNHLISATMSGVT CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMF RGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHW YTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEDEYEEEEEEEPVDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 246 | 246 | 6.8E-100 | ||
| Gene3D | 1 | 266 | 266 | 7.0E-128 | ||
| ProSitePatterns | 1 | 4 | 4 | - | ||
| PANTHER | 2 | 445 | 444 | 0.0 | – | |
| CDD | 2 | 429 | 428 | 0.0 | – | |
| PANTHER | 2 | 445 | 444 | 0.0 | ||
| Pfam | 3 | 211 | 209 | 1.4E-69 | ||
| PRINTS | 10 | 30 | 21 | 1.9E-106 | ||
| PRINTS | 41 | 58 | 18 | 2.9E-114 | ||
| SMART | 47 | 247 | 201 | 2.8E-66 | ||
| PRINTS | 51 | 70 | 20 | 1.9E-106 | ||
| PRINTS | 88 | 99 | 12 | 2.9E-114 | ||
| PRINTS | 93 | 104 | 12 | 1.9E-106 | ||
| PRINTS | 106 | 130 | 25 | 1.9E-106 | ||
| PRINTS | 108 | 126 | 19 | 2.9E-114 | ||
| PRINTS | 132 | 150 | 19 | 1.9E-106 | ||
| ProSitePatterns | 140 | 146 | 7 | - | ||
| PRINTS | 151 | 172 | 22 | 1.9E-106 | ||
| PRINTS | 152 | 164 | 13 | 2.9E-114 | ||
| PRINTS | 176 | 189 | 14 | 1.9E-106 | ||
| PRINTS | 190 | 210 | 21 | 1.9E-106 | ||
| PRINTS | 233 | 242 | 10 | 2.9E-114 | ||
| SUPERFAMILY | 247 | 432 | 186 | 7.94E-81 | ||
| PRINTS | 248 | 261 | 14 | 2.9E-114 | ||
| SMART | 249 | 386 | 138 | 5.9E-42 | ||
| Pfam | 264 | 385 | 122 | 2.3E-41 | ||
| Gene3D | 267 | 376 | 110 | 5.0E-54 | ||
| PRINTS | 268 | 284 | 17 | 2.9E-114 | ||
| PRINTS | 314 | 332 | 19 | 2.9E-114 | ||
| PRINTS | 332 | 346 | 15 | 2.9E-114 | ||
| PRINTS | 350 | 373 | 24 | 2.9E-114 | ||
| PRINTS | 373 | 401 | 29 | 1.9E-106 | ||
| Gene3D | 377 | 447 | 71 | 9.5E-35 | ||
| PRINTS | 380 | 391 | 12 | 2.9E-114 | ||
| Coils | 411 | 441 | 31 | - | – | |
| PRINTS | 415 | 433 | 19 | 2.9E-114 | ||
| MobiDBLite | 426 | 449 | 24 | - | – | |
| MobiDBLite | 430 | 449 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | Structural constituent of cytoskeleton | The action of a molecule that contributes to the structural integrity of a cytoskeletal structure. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Cellular component | Microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. | ||
| Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. |
Expression pattern of LotjaGi6g1v0268300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…