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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0276400 |
| Transcript ID | LotjaGi6g1v0276400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle-associated membrane protein, putative; TAIR: AT1G04760.1 vesicle-associated membrane protein 726; Swiss-Prot: sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726; TrEMBL-Plants: tr|I3S869|I3S869_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0276400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59343455..59347015) extracted from Lotus japonicus Gifu genome v1.2.
CAGAACCAGAAGCCACTGATCTACGCCTTCGTTTCTCGCGGCACCGTCATCCTCGCCGAGTTCACTGAATTCAGCGGTAA CTTCAACTCCATCGCGTTTCAGTGCCTTCAGAAGCTTCCTTCCACCAGCAACAAGTTCACCTACAACTGCGATGCTCACA CCTTCAACTTCCTCGTCGACAATGGCTACAGTATGTTGTTCCCCATTGAGATCTAACTCCTTTGCTTTGCTATTCTTAAA ATGTGACTTCATAGGGTATTTTCGTTGAAGCTTTGTCTATGTATTTGCTCATAGCACTTGTTACATTGTTGTGTTTTGTA TGTGTAGGTAGGCTGGTGTTAAACCCTAGATTTTTTTCTCATTTTTTTGTTGATTTCATTTTGAAGCAGAAAACTAGCAT TTCTATTCATGCCATGAAATTTTATTTGGAAACTGATGCTAGTCCAAGACCATTTAAATTATTCCTTAAGTTATCAATCA ATTATCAATGTGTGCTTTTATCCCCTTTTTTTTATCAAAAATGTTTGGCATTTCCGGTTACTTGTATTTTTAAGCTATAT AATCTGCTTGGATTGGTGGAAGCAAAGTCTTATTCTAGCATATGATGACTGGCTTAGTTTCTTATGCTTAATATTTGAAA TTTTGAATGCTAAAAGCTGAAATGGACCTATACATGGGATCAAGGCTTCATGTTAATGTTAGTTATTTGGTGATCTTCTT AATGCCGGTTAAGTTACGTATTTGGTCACCTATACTAATTGGGTTCCTGGATCATCTATCTTGGTTTTTTGTTCCGTGGC AAAATTAGTTTGTATGATTTCTTGTGGACAATTCTATCGTTGACATGTTAAAAACTGGTCCACCCATTAACATGATTTTA CTACTAAATTTAGTTCATGTTGTTTACAATATGCTCCTTATGTGCCTAAATTGATTTGCGGAGAAGCCCCTTTTAACTCG TGAACTAGATTTTTCTTGGTCCATGGGAGACAAAGCCATTTCTTATAATGTATTTTGAAGCTTTTTAATTTGTTTTGAGG GTTCGAGGCCAACATTGATTTGGACCTCTCAGAGTTTACTGATATACAGGAATTTCAATGTATAAAACTTATGAAAAGAT TAAAGAAACAAGAGAGTAACATCTATATGTGCTACTTTAACTTTAAGAATGTACTTGAATGGTAGGGGTAACAATATGCG TTGCTAGCTTAACTAATATTCCAGCATTACTGTTTTTTCTATTGTCTATAGCTCCTAATTTTGTCAACTGATACTTATTA TGCTGAGGTTAGCCTTCAGAAATGTCTGACTTCTGTAATTTTTTTAGCATATTGTATTGTTGCGGACGAATCAGTTGGAA GGCAGGTGCCCATGGCTTTTCTAGAGCGTGTCAAGGATGATTTTGTGTCAAAATATGGTGATGGAAAGGCTGCCACTGCT CCTGCCAACAGCCTTAACAAGGAATTTGGGTATGAAGCTTCTGTTCTATAAAGTTTAAGCTGGTGGGTTTCTAGTATTTT GGGTTTGGCTAATGTGTCATCCTCTTTACACAGGCCAAAATTGAAGGAACATATGCAGTACTGTGTTGATCATCCTGAAG AGATAAGCAAGCTTGCAAAGGTGAAAGCTCAGGTTTCTGAAGTTAAAGGTGTCATGATGGAGAATATAGAAAAGGTATAG ATAATCTACTTAGATGCATTTATTTAAGAGGGTGTTGCGACAGAAACTGAAATATCAAATAGTGTAATTAACTACAAGAG CCATTTTTGCCAAGAGAAAATATTAATGTGATATTGATTCCCAAAAAATGTAGACAACAGAACATATTAAATCTCTGAAA CATTTAGAACTTCAAATTATTTCAGTTTATATTTTATGAAATTCTTGCACTGTGCTTGTGAAACATTTGATATAACTACA AGTCCAGCTTAGGCATGTCAATTGATGATCTGGCATAACCACATTCAGATATTAATTTTCATATATGTGACGGCAAACTG GAAAGATAATGAAAATGGTTGTTGATCTTAGAGTAGCTAAGTTGCATAGATTGGTAAAACATAGAACCCAATAAGTTCTC CATTCCCCTTTTCAGATGGAACCCATTTCCCATCATGTTTTATGTTCAGGTTTTAAGTATCTATTATAGTTTCGATTGGA AGAGCCCAACAACACTGAAGGTAGATGGAAAACAAAATCCTGCCTAGTCTAGAGTTTGATTGTGAGAAAGCTTATGAGCA ACTGAGTTTGTGTTCTTAGAATCTTAGTCTAGATGGAAAAAGTGGCTTTGCTATTCTTTCTATACCGTCTTTCTGGGTCA TGAATGGCCTGTTTTCATGTACACTACAGAATTGGGTAAGAGAACATTCTACGCACATTCATGTCTCCTTTGTGGTTGAT GTTTTACTAGTAATGAAGGGCATTTGTTGGAGTAGAGATACTGTTAATGTTCAGACCGCCCCACATATCTTTGAGACTAG CTAATAGTAATAACACTATTTTAATCAGAGTAGTCATGGTATATTTGCTTCAGCTTAATTTTAGAGATAGAATGATTTTC TTAAAAGGCTCCCAAAAAATTGCGCAGAAAGCAGTTATTTTTCAGATTATGCTAATCCGAAAACCCACTTAATAGTGTAC AATAGTGGGGTGTGTGGCTGCACCAGGAATTTCTTGCGTTATGTTTTCCTATATTGTGCTTAGCACTGGGATCCTGGCCA CTCCACTGAACAGGAGTTTCATGCCTTATGCTCATATACTCTATCTCTCTCTTTCCCTATTGAAGTGTGTGCTACCCCTT TAATTGGATTAACATGTCTAAATGCATAAGGATATTTAATTTAATCTGGTTATATTGACATGTTAACTATTTGATGTAGG TTCTGGACAGGGGTGAAAAGATAGAGCTTTTGGTGGACAAGACTGAGAACCTTCATCACCAGGTTAGTTACTATATTTTT TACAGCTTATCTATGCTTAGAATGGAGTTGGTTGACTATTTTTGAAGTGGATACTAAGTAGTGCATTTCAAATTATTACT CTTGGACCTACTACTTACATCCACTTTTAATATTAAAGAATTATGTATGTGTGTGTGGGTGTGGGGTCAAAGTAAATTTA TATTTAATCTTATGATTTTAAGAAAAAACTATCATATGTTGGATTTTCCTTTCATTTTACACCCGAGTCATAATTATCTC TTGCAGTGTGCACATTATTTGTATTTGATGGCATATTTGAGTCTCTTAATAAGTTCTTCCATTCCACATCCTCGCTCTCC TCTCTCTACCTGCTAAAACAAAAATAATATGTCTTATAAATCCACATGTTTTCAGTCACTTTTTTCATTTCTAATTTTGG ATTATGGAAGCATGGATTTGTATTTTGCCAATTTTGAGGAAAGAAATATTTTCTCAGGCACAAGATTTCAGAACTTCTGG AACCTCAATCAGACGGAAAATGTGGCTGCAAAACATGAAGATAAAGCTGATTGTACTGGGAATTTTGATAGCACTGATCC TCATAATAGTCCTTTCTGCCACTCGTGGATTCCAAAAATGA
CDS sequence (LotjaGi6g1v0276400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTTCTAGAGCGTGTCAAGGATGATTTTGTGTCAAAATATGGTGATGGAAAGGCTGCCACTGCTCCTGCCAACAG CCTTAACAAGGAATTTGGGCCAAAATTGAAGGAACATATGCAGTACTGTGTTGATCATCCTGAAGAGATAAGCAAGCTTG CAAAGGTGAAAGCTCAGGTTTCTGAAGTTAAAGGTGTCATGATGGAGAATATAGAAAAGGTTCTGGACAGGGGTGAAAAG ATAGAGCTTTTGGTGGACAAGACTGAGAACCTTCATCACCAGGCACAAGATTTCAGAACTTCTGGAACCTCAATCAGACG GAAAATGTGGCTGCAAAACATGAAGATAAAGCTGATTGTACTGGGAATTTTGATAGCACTGATCCTCATAATAGTCCTTT CTGCCACTCGTGGATTCCAAAAATGA
Protein sequence (LotjaGi6g1v0276400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFLERVKDDFVSKYGDGKAATAPANSLNKEFGPKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEK IELLVDKTENLHHQAQDFRTSGTSIRRKMWLQNMKIKLIVLGILIALILIIVLSATRGFQK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 140 | 140 | 2.0E-83 | – | |
| Gene3D | 1 | 50 | 50 | 2.4E-9 | – | |
| ProSiteProfiles | 1 | 36 | 36 | 11.19 | ||
| PANTHER | 1 | 140 | 140 | 2.0E-83 | – | |
| Phobius | 1 | 115 | 115 | - | – | |
| SUPERFAMILY | 2 | 43 | 42 | 1.1E-5 | ||
| CDD | 2 | 43 | 42 | 1.09802E-8 | – | |
| SUPERFAMILY | 47 | 114 | 68 | 1.62E-23 | – | |
| Pfam | 51 | 135 | 85 | 4.4E-32 | ||
| Gene3D | 51 | 136 | 86 | 9.6E-31 | – | |
| CDD | 52 | 110 | 59 | 1.66568E-24 | – | |
| ProSiteProfiles | 52 | 112 | 61 | 18.683 | ||
| PRINTS | 57 | 76 | 20 | 3.0E-20 | ||
| ProSitePatterns | 70 | 89 | 20 | - | ||
| PRINTS | 77 | 96 | 20 | 3.0E-20 | ||
| PRINTS | 113 | 132 | 20 | 3.0E-20 | ||
| TMHMM | 116 | 138 | 23 | - | – | |
| Phobius | 116 | 135 | 20 | - | – | |
| Phobius | 136 | 141 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi6g1v0276400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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