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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0284200 |
| Transcript ID | LotjaGi6g1v0284200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcriptional adapter ADA2; TAIR: AT4G16420.3 ADA2 2B; Swiss-Prot: sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2; TrEMBL-Plants: tr|I1MFQ5|I1MFQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0284200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:60055316..60060639) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAATTTTTATGACATTCCAGTTAAAGCAGCAAATCCCAAACTGAACATGCCTTGACTTTGACCTACATCATCATCTT CCTCTCTTCTCTTATCTCATGTCTCAGTTTTCTTCGACAAAAAAATATTTTATTTAATGTTTTCTCAGTAGTAGTACAGT AGCATCATAAAAAAACACTTCAATTTTTGTCAAAATCTGAGTGACCCAACTGCAAAAAAATCCATTCCCAATTTTTTTTT TTTTTTGTAATAACCATTCATCGTACCTAAACAATCAATCTAGGGTTCTTTTTTCCCCAAATTGAAAAATTGCAATTGTG CTTCTCAACAAACTCAAATTCATTCTTCAGGGGTCGTCGCAGAAAACCAATGGGTCGTTCTCGAGGGAATTTTCAGCACG CCGATGAGGACCCCAACCAAAGGTTTGTTTGATCTCTTTCTTACTATATACTTTCGTTATTTGTTGTTAATGGAAAATGG GTTTCACTCCTCTGTCAAAATGCATTTGTGGGTGTATGGATTCTGAAATCAAAATTGAATTTTGCAATAGTTGTTTTTTT GCTGAATGTGTGTGACTGGTTACAGAAGATGCAGTGAAATGTAATGTTATGGTGATTTTGAAGTTGTTGTTTTGTTGTTT GTGCAGGTCCAGGAGAAAAAAGAATGCTGCCAGTGGTGAAAATTTAGAATCTGGAGCTGCAGGTAGATTTTTCCACCATC CTACACTATCTTGATTTGTTCAATTCCACAGTGAATGTGAAATTACATTGTGTACTAATACATTAGCATATCCATTAACT TTAACTTACTAAACTGAGGTAACCATGACCATTTTCATGCACTATAAGTCTGTACTGTGTAAGTGTAACTCTACTGTATT GTAGAAGTAAGCTTTAAGTTATGTTTTCCTGAAGATATTTATTAAATAGGTGTTGCCTGGAGTTTCTTTTTCGAAGTTAT GAATTCATTGGAGTTGTACTGGCAGGCTTGTGGAATGTCTGTTTAACTAGCTGTAGTAGTGATTTAGAGCTTTAACTATC TGTTTATTGATTGTTGATTCATGGATACTGATGTTTGATTCTACTGGTTGTCATGTGAGCCAGGTCAAGGAGTAAGTGAG GGGGGAAAGAAAGCTCTGTATCACTGCAATTATTGTAATAAAGATATTTCAGGGAAAATCCGTATTAAATGTGCCATGTG CCCGGATTTTGACTTATGTATAGAGTGCTTTTCTGTTGGAGCTGAGGTGACACCTCACAAAAGCAATCACCCTTACAGGG TTATGGTCAGTAGCCATTACAATCAAAATGTTTTCTAATGTCTTGTTGATTTAAAGCTTTTGTTTGAGAGGGCTTATGTA TTGATTTTCATGCTAGACTGCTAATTGATCAGATTGAGGACAATTAGAGTATGAATTGGTTGAGTTAGTTAGATTTGAAA TTCACTCTGAAGCTGTTTTGCTATCATGTGTGGAGTATTTAACTGAATCTGCCAAACTGCTCTTAAATTGCATTTCTGAG TTTTGTCAGTTATGATTGCTTTGTTACTCTATCATGGTCTGTTTTAATATGATTTTATTTTGCTAGGATAATTTGTCTTT CCCTCTTATTTGCCCGGACTGGAATGCAGATGATGAAATTTTGCTTCTAGAGGTACTTTATATTTATTTCCTCAAAGTAA CGGTGACTAGTACTTCAAAACTACGAAGCATAATATTTGGTGTTCAAAGAAGAAATCTAGTATTTACATCTGACCTTTCT AGCGATAATTTTTTGGTTTTAGGGAATTGAAATGTATGGCATGGGAAACTGGACAGAAGTTGCTGAGCATGTTGGGACAA AGAACAAACAATCATGCATAGAACACTATCAGAATGTATACTTGAACTCCCCGTTCTTTCCTCTTCCGGTATGACAGACA TTTAATGAAGCCCAATCAGTGGTTCTTATTATCTTTATTCTTATAAAGTTATTTTAAATCCTGACCTTTCTTATTTTCCA GGACATGTCTCATGTTGTTGGGAAAAACAGAAAAGAACTTCTCGCCATGGCAAAAGGGCACGGTGAGGACAAGAAAGGTT TGTTCCAATACAAAACATCAAAATCATTTGGTTTTTTGTTTTTTTTTTCACTTGCATAGTATTCTGTTGTAATTTGGCAT GCTTCATATATCACTACTTTTGGATGGCATAAGCTTGTACCCTGTAATATAAGATTATGTATAATGTATCTCCAAGTTAG AAACAATAATGAATTAATACCTGAAGGCATCACTGGTTCAGATTGGCTGAAGACTGTACATGTTGCTCATAATTGCTTAA AATGTTTTAGATAAAAGGAAAAAAAATTATAATCATATATGGTTTCTGATCTTTTACAGATTGGAAGTTCGTGTGTTTTA TTCACATTTTTTAATCATTGGACGCTTGTGATTCTTACAGGAATTTCTATGGGGGACCTTAGTGTAAAGGAAGAATCTCC CTTTTCTCCATCTAGAGTCAAGTAAGGCTGTCATTTTTTTTATATGCATTTTCTCTTGCTATCCTCTATACCATTCTCTT TGACTTCTTTTTATTGGTTCAGAGTTGAAGATTCCCATAAAGCTGGTTCCGCTAACCGTTTGCCTTCCAGTTTGAATTCA GGTAAAGCAAAATAAGTTCATCGCTATCATCCATGCAACAATTTTCCCATGTTCATCTTCTTTGCATCACTATGTTGTTT GTATATTTCAGAGTTAGATTCTGGCCCTTCAGGTAGCGCACATGCAGCAGCTGGTGCTAACCAGAAGGCCTCCAATATGG CCCGAGGGAAAGGTGGTCCTGGAATCATTAAAATGGAAGGTGTGCACCTTTTTGTTTGGTACTGAATCCCAATTGAAAAG TTCGAAAAAAGCCAACAACATTTTGGAATAATACCTTTTGCTTCTATTCTTATTAAAAAACGGAAAGACTTTCATTTCAT ACGTGTGCCTATTGCATGCTTTTCAACCTTAGCAAGAAACTAATTTTGAAGAAAACGTGGCAGTTCTTCTATTACTAGTA TAACTAATAGTAAGATGGTGTGTGCTGAGGTAGCTTAAGCAGCTTCTTCTCTTGCACAGCGGTATTGACACCTTTATTTT GTTTTTCTTAGAGGCAGTAGATTGCCTATGTACCATGCATATTCTTTGAGGAAATTTATAACTTAAAATATTCTTTATTG AACTTCCTAGTTCCTTTGTCACTGACAGATTCTCAAGGAGACAGAGATTTTGGAGGAAAGAAGCCAAATTCCTCAGGAAA TGAAGGTCCTTCTTTAGTAGAAGCAAGTGGTTTTAACGCAAAAAGACAGGAATTTGATCCTGAATATGATAATGACGCTG AACAACTACTAGCTGAAATGGAATTTAAGGACAATGACACCGAGGAAGAGCGGGAGATAAAATTACGTGTCTTGCGTTTA TATTCAAAAAGGTAATGGTTTCTCTTCCTGGAACATAAACGCTCAACCGTTAACAGAAATGATGTTTCAAAGTATTTGCA GAGTGTTGCTCACACTTCCATTTTAAAATTGAAATATTGCTGCAGGCTTGATGAAAGAAAGCGTAGGAAGGATTTCATAC TTGAAAGAAATTTGTTATACCCAAATCCATTTGAGAAGGATTTAACTCCTGAGGAGAAGGCAATATGTCGGAGATATGAC TTATTCATGCGCTTTCACTCTAAGGAAGATCACCTGGAATTGCTTAGAACAGCTATTTCTGAACACAGAACTTTTAGAAG ACTTCAAGAGCTTAAGGTTCGAGACATTCTTATTTTTCCTCTCTTCTGAAAATGTAGCCTGTTTTTTGTGGCATTTTGGG ATCATTATATTCTGGATCGTTATAGTTTGTTAAAATACATGAACATGGTACTGCTTCTGGGCGGTTAGGAATTTTTTCAT ACTGGGCAGTCTGGGTATGCAATTTTTTAGGTGTCTTATGAGGATCTTGGTTAAAGCATTTCTGTTAGTCAATCCGTAGC ACTAGATATTATGTTGGAAGAATTGGTTATTTAAAATATATCAGATCTTAGATTTGTATTTGTAGTTGTACATTTATGAT TTCAATGGATGCTTCTTTTAACTGCTGATATTATGTGATTTGCATACTGCAATACACAAATCAAACAGTGGACATTAACT CTTACATTTGTGTTCTATGGTACTGCAGGAAGCCCGGGCTGCTGGTTGCCGCACTTCAGCTGAAGCAGAAAGATATCTGG TACAGAAGAGAAGAAGGGTAGCTGAAGAGAATGCTCTGAGGACAAAGGAAAGTGCTCTGCAGGTTGGCCCAAGCAGTCAG GCGGTTCCAAATGCATTAATGTCTCCAGACTCTACTGGCAAGGATATAAGCGTGAGACCTGCCACTTCAAGCTCTGTCAA TGAAATCGATGTAACCGGATACTACGGAGCAGATTTACTTTCTGAACCTGTAAGCAATCTCTTTCCTAAGACATTATTCA CTGATCCGTGTTATTGGTTTTCAAATGTAGCCATCCGCTGAGTATGTGTACAAATTTCATTTTTCTAGGTTCTTGTGGTG CCTGCCATTTTGTTTTTGGATAATATATCACTGTCTTTGCCAAGTTTGCATTTTAAATCAGTACATTATTTCTTCATATA TTTTCTGAATCTATCATCGCTGTAATTTCTTGGCAGGAGAAACGCTTATGCTGCGAGCTAAGGTTGCCTCCAGCGGTGTA TCTAAAGATGCAAGAGCAACTGTCTGTACAAATGATTGCTGGCAATGTCTCTACAAAATCAGATGCTCACCAATTATTCA AGATGGACACCTTCAAAATTGACAGGGTGTATGATATGCTCATTAAAAAGGGATTTGGTTCACCCTGAGAAGTCTCATGC TTCATCATCTGTGTCACCTCATTATCTATCAACCTCTTCTAGCCTCCAGTTATCAAAATCAATTTATGTTGTTGTTTGTA TATCAATATCTCTCAGAAATTTTGAAGTGTTGTCTCAAGTTTTAGTTATCAGCTGAGTTATCGCAAGGATGTACTATACA CAGGAGTTAACTGATATTGGATAGAAGTTATGAGTGTATAGGGATAGGAGTAGTCTAGGTCAGGATAGGCTTTGGATAAA TAAGTCTGACCTACTTAAAAATTTTAAGGTTTGTGTTTGGATGCTTAGGAGAGAACTATGAATTGTCTTCATATGAAAAT CAATGTAACAAGGGCGCATAGCCCAGTCTTCAATCATAAAGCAGTCATTTGGTCATTATCTGCTCTTTTATTATGCTATT ATGAGGGTGCGTTATTATGCCATTGGTGGTTAATTAATTTGGCT
CDS sequence (LotjaGi6g1v0284200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCGTTCTCGAGGGAATTTTCAGCACGCCGATGAGGACCCCAACCAAAGGTCCAGGAGAAAAAAGAATGCTGCCAG TGGTGAAAATTTAGAATCTGGAGCTGCAGGTCAAGGAGTAAGTGAGGGGGGAAAGAAAGCTCTGTATCACTGCAATTATT GTAATAAAGATATTTCAGGGAAAATCCGTATTAAATGTGCCATGTGCCCGGATTTTGACTTATGTATAGAGTGCTTTTCT GTTGGAGCTGAGGTGACACCTCACAAAAGCAATCACCCTTACAGGGTTATGGATAATTTGTCTTTCCCTCTTATTTGCCC GGACTGGAATGCAGATGATGAAATTTTGCTTCTAGAGGGAATTGAAATGTATGGCATGGGAAACTGGACAGAAGTTGCTG AGCATGTTGGGACAAAGAACAAACAATCATGCATAGAACACTATCAGAATGTATACTTGAACTCCCCGTTCTTTCCTCTT CCGGACATGTCTCATGTTGTTGGGAAAAACAGAAAAGAACTTCTCGCCATGGCAAAAGGGCACGGTGAGGACAAGAAAGG AATTTCTATGGGGGACCTTAGTGTAAAGGAAGAATCTCCCTTTTCTCCATCTAGAGTCAAAGTTGAAGATTCCCATAAAG CTGGTTCCGCTAACCGTTTGCCTTCCAGTTTGAATTCAGAGTTAGATTCTGGCCCTTCAGGTAGCGCACATGCAGCAGCT GGTGCTAACCAGAAGGCCTCCAATATGGCCCGAGGGAAAGGTGGTCCTGGAATCATTAAAATGGAAGATTCTCAAGGAGA CAGAGATTTTGGAGGAAAGAAGCCAAATTCCTCAGGAAATGAAGGTCCTTCTTTAGTAGAAGCAAGTGGTTTTAACGCAA AAAGACAGGAATTTGATCCTGAATATGATAATGACGCTGAACAACTACTAGCTGAAATGGAATTTAAGGACAATGACACC GAGGAAGAGCGGGAGATAAAATTACGTGTCTTGCGTTTATATTCAAAAAGGCTTGATGAAAGAAAGCGTAGGAAGGATTT CATACTTGAAAGAAATTTGTTATACCCAAATCCATTTGAGAAGGATTTAACTCCTGAGGAGAAGGCAATATGTCGGAGAT ATGACTTATTCATGCGCTTTCACTCTAAGGAAGATCACCTGGAATTGCTTAGAACAGCTATTTCTGAACACAGAACTTTT AGAAGACTTCAAGAGCTTAAGGAAGCCCGGGCTGCTGGTTGCCGCACTTCAGCTGAAGCAGAAAGATATCTGGTACAGAA GAGAAGAAGGGTAGCTGAAGAGAATGCTCTGAGGACAAAGGAAAGTGCTCTGCAGGTTGGCCCAAGCAGTCAGGCGGTTC CAAATGCATTAATGTCTCCAGACTCTACTGGCAAGGATATAAGCGTGAGACCTGCCACTTCAAGCTCTGTCAATGAAATC GATGTAACCGGATACTACGGAGCAGATTTACTTTCTGAACCTGAGAAACGCTTATGCTGCGAGCTAAGGTTGCCTCCAGC GGTGTATCTAAAGATGCAAGAGCAACTGTCTGTACAAATGATTGCTGGCAATGTCTCTACAAAATCAGATGCTCACCAAT TATTCAAGATGGACACCTTCAAAATTGACAGGGTGTATGATATGCTCATTAAAAAGGGATTTGGTTCACCCTGA
Protein sequence (LotjaGi6g1v0284200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRSRGNFQHADEDPNQRSRRKKNAASGENLESGAAGQGVSEGGKKALYHCNYCNKDISGKIRIKCAMCPDFDLCIECFS VGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGMGNWTEVAEHVGTKNKQSCIEHYQNVYLNSPFFPL PDMSHVVGKNRKELLAMAKGHGEDKKGISMGDLSVKEESPFSPSRVKVEDSHKAGSANRLPSSLNSELDSGPSGSAHAAA GANQKASNMARGKGGPGIIKMEDSQGDRDFGGKKPNSSGNEGPSLVEASGFNAKRQEFDPEYDNDAEQLLAEMEFKDNDT EEEREIKLRVLRLYSKRLDERKRRKDFILERNLLYPNPFEKDLTPEEKAICRRYDLFMRFHSKEDHLELLRTAISEHRTF RRLQELKEARAAGCRTSAEAERYLVQKRRRVAEENALRTKESALQVGPSSQAVPNALMSPDSTGKDISVRPATSSSVNEI DVTGYYGADLLSEPEKRLCCELRLPPAVYLKMQEQLSVQMIAGNVSTKSDAHQLFKMDTFKIDRVYDMLIKKGFGSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 555 | 555 | 9.7E-226 | – | |
| PANTHER | 1 | 555 | 555 | 9.7E-226 | ||
| MobiDBLite | 1 | 27 | 27 | - | – | |
| MobiDBLite | 1 | 41 | 41 | - | – | |
| PIRSF | 36 | 556 | 521 | 5.8E-149 | ||
| Gene3D | 43 | 98 | 56 | 3.2E-11 | ||
| SMART | 45 | 90 | 46 | 2.8E-11 | ||
| Pfam | 47 | 89 | 43 | 2.4E-9 | ||
| CDD | 49 | 97 | 49 | 2.12644E-27 | ||
| SUPERFAMILY | 49 | 111 | 63 | 1.0E-14 | – | |
| ProSiteProfiles | 49 | 92 | 44 | 10.869 | ||
| ProSitePatterns | 51 | 78 | 28 | - | ||
| SUPERFAMILY | 102 | 155 | 54 | 3.04E-12 | ||
| ProSiteProfiles | 104 | 156 | 53 | 20.001 | ||
| Gene3D | 104 | 154 | 51 | 4.3E-13 | – | |
| SMART | 105 | 154 | 50 | 1.0E-10 | ||
| Pfam | 108 | 151 | 44 | 3.4E-11 | ||
| CDD | 109 | 151 | 43 | 1.06143E-11 | ||
| MobiDBLite | 178 | 192 | 15 | - | – | |
| MobiDBLite | 178 | 286 | 109 | - | – | |
| MobiDBLite | 216 | 232 | 17 | - | – | |
| MobiDBLite | 451 | 470 | 20 | - | – | |
| SUPERFAMILY | 469 | 554 | 86 | 6.09E-19 | ||
| ProSiteProfiles | 471 | 557 | 87 | 12.086 | ||
| Gene3D | 472 | 555 | 84 | 3.8E-18 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Transcription coactivator activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Biological process | Regulation of histone acetylation | Any process that modulates the frequency, rate or extent of the addition of an acetyl group to a histone protein. |
Expression pattern of LotjaGi6g1v0284200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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