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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0284200 |
| Transcript ID | LotjaGi6g1v0284200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcriptional adapter ADA2; TAIR: AT4G16420.3 ADA2 2B; Swiss-Prot: sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2; TrEMBL-Plants: tr|I1MFQ5|I1MFQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0284200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:60055333..60060579) extracted from Lotus japonicus Gifu genome v1.2.
TTGACCTACATCATCATCTTCCTCTCTTCTCTTATCTCATGTCTCAGTTTTCTTCGACAAAAAAATATTTTATTTAATGT TTTCTCAGTAGTAGTACAGTAGCATCATAAAAAAACACTTCAATTTTTGTCAAAATCTGAGTGACCCAACTGCAAAAAAA TCCATTCCCAATTTTTTTTTTTTTTTGTAATAACCATTCATCGTACCTAAACAATCAATCTAGGGTTCTTTTTTCCCCAA ATTGAAAAATTGCAATTGTGCTTCTCAACAAACTCAAATTCATTCTTCAGGGGTCGTCGCAGAAAACCAATGGGTCGTTC TCGAGGGAATTTTCAGCACGCCGATGAGGACCCCAACCAAAGGTTTGTTTGATCTCTTTCTTACTATATACTTTCGTTAT TTGTTGTTAATGGAAAATGGGTTTCACTCCTCTGTCAAAATGCATTTGTGGGTGTATGGATTCTGAAATCAAAATTGAAT TTTGCAATAGTTGTTTTTTTGCTGAATGTGTGTGACTGGTTACAGAAGATGCAGTGAAATGTAATGTTATGGTGATTTTG AAGTTGTTGTTTTGTTGTTTGTGCAGGTCCAGGAGAAAAAAGAATGCTGCCAGTGGTGAAAATTTAGAATCTGGAGCTGC AGGTAGATTTTTCCACCATCCTACACTATCTTGATTTGTTCAATTCCACAGTGAATGTGAAATTACATTGTGTACTAATA CATTAGCATATCCATTAACTTTAACTTACTAAACTGAGGTAACCATGACCATTTTCATGCACTATAAGTCTGTACTGTGT AAGTGTAACTCTACTGTATTGTAGAAGTAAGCTTTAAGTTATGTTTTCCTGAAGATATTTATTAAATAGGTGTTGCCTGG AGTTTCTTTTTCGAAGTTATGAATTCATTGGAGTTGTACTGGCAGGCTTGTGGAATGTCTGTTTAACTAGCTGTAGTAGT GATTTAGAGCTTTAACTATCTGTTTATTGATTGTTGATTCATGGATACTGATGTTTGATTCTACTGGTTGTCATGTGAGC CAGGTCAAGGAGTAAGTGAGGGGGGAAAGAAAGCTCTGTATCACTGCAATTATTGTAATAAAGATATTTCAGGGAAAATC CGTATTAAATGTGCCATGTGCCCGGATTTTGACTTATGTATAGAGTGCTTTTCTGTTGGAGCTGAGGTGACACCTCACAA AAGCAATCACCCTTACAGGGTTATGGTCAGTAGCCATTACAATCAAAATGTTTTCTAATGTCTTGTTGATTTAAAGCTTT TGTTTGAGAGGGCTTATGTATTGATTTTCATGCTAGACTGCTAATTGATCAGATTGAGGACAATTAGAGTATGAATTGGT TGAGTTAGTTAGATTTGAAATTCACTCTGAAGCTGTTTTGCTATCATGTGTGGAGTATTTAACTGAATCTGCCAAACTGC TCTTAAATTGCATTTCTGAGTTTTGTCAGTTATGATTGCTTTGTTACTCTATCATGGTCTGTTTTAATATGATTTTATTT TGCTAGGATAATTTGTCTTTCCCTCTTATTTGCCCGGACTGGAATGCAGATGATGAAATTTTGCTTCTAGAGGTACTTTA TATTTATTTCCTCAAAGTAACGGTGACTAGTACTTCAAAACTACGAAGCATAATATTTGGTGTTCAAAGAAGAAATCTAG TATTTACATCTGACCTTTCTAGCGATAATTTTTTGGTTTTAGGGAATTGAAATGTATGGCATGGGAAACTGGACAGAAGT TGCTGAGCATGTTGGGACAAAGAACAAACAATCATGCATAGAACACTATCAGAATGTATACTTGAACTCCCCGTTCTTTC CTCTTCCGGTATGACAGACATTTAATGAAGCCCAATCAGTGGTTCTTATTATCTTTATTCTTATAAAGTTATTTTAAATC CTGACCTTTCTTATTTTCCAGGACATGTCTCATGTTGTTGGGAAAAACAGAAAAGAACTTCTCGCCATGGCAAAAGGGCA CGGTGAGGACAAGAAAGGTTTGTTCCAATACAAAACATCAAAATCATTTGGTTTTTTGTTTTTTTTTTCACTTGCATAGT ATTCTGTTGTAATTTGGCATGCTTCATATATCACTACTTTTGGATGGCATAAGCTTGTACCCTGTAATATAAGATTATGT ATAATGTATCTCCAAGTTAGAAACAATAATGAATTAATACCTGAAGGCATCACTGGTTCAGATTGGCTGAAGACTGTACA TGTTGCTCATAATTGCTTAAAATGTTTTAGATAAAAGGAAAAAAAATTATAATCATATATGGTTTCTGATCTTTTACAGA TTGGAAGTTCGTGTGTTTTATTCACATTTTTTAATCATTGGACGCTTGTGATTCTTACAGGAATTTCTATGGGGGACCTT AGTGTAAAGGAAGAATCTCCCTTTTCTCCATCTAGAGTCAAGTAAGGCTGTCATTTTTTTTATATGCATTTTCTCTTGCT ATCCTCTATACCATTCTCTTTGACTTCTTTTTATTGGTTCAGAGTTGAAGATTCCCATAAAGCTGGTTCCGCTAACCGTT TGCCTTCCAGTTTGAATTCAGGTAAAGCAAAATAAGTTCATCGCTATCATCCATGCAACAATTTTCCCATGTTCATCTTC TTTGCATCACTATGTTGTTTGTATATTTCAGAGTTAGATTCTGGCCCTTCAGGTAGCGCACATGCAGCAGCTGGTGCTAA CCAGAAGGCCTCCAATATGGCCCGAGGGAAAGGTGGTCCTGGAATCATTAAAATGGAAGGTGTGCACCTTTTTGTTTGGT ACTGAATCCCAATTGAAAAGTTCGAAAAAAGCCAACAACATTTTGGAATAATACCTTTTGCTTCTATTCTTATTAAAAAA CGGAAAGACTTTCATTTCATACGTGTGCCTATTGCATGCTTTTCAACCTTAGCAAGAAACTAATTTTGAAGAAAACGTGG CAGTTCTTCTATTACTAGTATAACTAATAGTAAGATGGTGTGTGCTGAGGTAGCTTAAGCAGCTTCTTCTCTTGCACAGC GGTATTGACACCTTTATTTTGTTTTTCTTAGAGGCAGTAGATTGCCTATGTACCATGCATATTCTTTGAGGAAATTTATA ACTTAAAATATTCTTTATTGAACTTCCTAGTTCCTTTGTCACTGACAGATTCTCAAGGAGACAGAGATTTTGGAGGAAAG AAGCCAAATTCCTCAGGAAATGAAGGTCCTTCTTTAGTAGAAGCAAGTGGTTTTAACGCAAAAAGACAGGAATTTGATCC TGAATATGATAATGACGCTGAACAACTACTAGCTGAAATGGAATTTAAGGACAATGACACCGAGGAAGAGCGGGAGATAA AATTACGTGTCTTGCGTTTATATTCAAAAAGGTAATGGTTTCTCTTCCTGGAACATAAACGCTCAACCGTTAACAGAAAT GATGTTTCAAAGTATTTGCAGAGTGTTGCTCACACTTCCATTTTAAAATTGAAATATTGCTGCAGGCTTGATGAAAGAAA GCGTAGGAAGGATTTCATACTTGAAAGAAATTTGTTATACCCAAATCCATTTGAGAAGGATTTAACTCCTGAGGAGAAGG CAATATGTCGGAGATATGACTTATTCATGCGCTTTCACTCTAAGGAAGATCACCTGGAATTGCTTAGAACAGCTATTTCT GAACACAGAACTTTTAGAAGACTTCAAGAGCTTAAGGTTCGAGACATTCTTATTTTTCCTCTCTTCTGAAAATGTAGCCT GTTTTTTGTGGCATTTTGGGATCATTATATTCTGGATCGTTATAGTTTGTTAAAATACATGAACATGGTACTGCTTCTGG GCGGTTAGGAATTTTTTCATACTGGGCAGTCTGGGTATGCAATTTTTTAGGTGTCTTATGAGGATCTTGGTTAAAGCATT TCTGTTAGTCAATCCGTAGCACTAGATATTATGTTGGAAGAATTGGTTATTTAAAATATATCAGATCTTAGATTTGTATT TGTAGTTGTACATTTATGATTTCAATGGATGCTTCTTTTAACTGCTGATATTATGTGATTTGCATACTGCAATACACAAA TCAAACAGTGGACATTAACTCTTACATTTGTGTTCTATGGTACTGCAGGAAGCCCGGGCTGCTGGTTGCCGCACTTCAGC TGAAGCAGAAAGATATCTGGTACAGAAGAGAAGAAGGGTAGCTGAAGAGAATGCTCTGAGGACAAAGGAAAGTGCTCTGC AGGTTGGCCCAAGCAGTCAGGCGGTTCCAAATGCATTAATGTCTCCAGACTCTACTGGCAAGGATATAAGCGTGAGACCT GCCACTTCAAGCTCTGTCAATGAAATCGATGTAACCGGATACTACGGAGCAGATTTACTTTCTGAACCTGTAAGCAATCT CTTTCCTAAGACATTATTCACTGATCCGTGTTATTGGTTTTCAAATGTAGCCATCCGCTGAGTATGTGTACAAATTTCAT TTTTCTAGGTTCTTGTGGTGCCTGCCATTTTGTTTTTGGATAATATATCACTGTCTTTGCCAAGTTTGCATTTTAAATCA GTACATTATTTCTTCATATATTTTCTGAATCTATCATCGCTGTAATTTCTTGGCAGGAGAAACGCTTATGCTGCGAGCTA AGGTTGCCTCCAGCGGTGTATCTAAAGATGCAAGAGCAACTGTCTGTACAAATGATTGCTGGCAATGTCTCTACAAAATC AGATGCTCACCAATTATTCAAGATGGACACCTTCAAAATTGACAGGGTGTATGATATGCTCATTAAAAAGGGATTTGGTT CACCCTGAGAAGTCTCATGCTTCATCATCTGTGTCACCTCATTATCTATCAACCTCTTCTAGCCTCCAGTTATCAAAATC AATTTATGTTGTTGTTTGTATATCAATATCTCTCAGAAATTTTGAAGTGTTGTCTCAAGTTTTAGTTATCAGCTGAGTTA TCGCAAGGATGTACTATACACAGGAGTTAACTGATATTGGATAGAAGTTATGAGTGTATAGGGATAGGAGTAGTCTAGGT CAGGATAGGCTTTGGATAAATAAGTCTGACCTACTTAAAAATTTTAAGGTTTGTGTTTGGATGCTTAGGAGAGAACTATG AATTGTCTTCATATGAAAATCAATGTAACAAGGGCGCATAGCCCAGTCTTCAATCATAAAGCAGTCATTTGGTCATTATC TGCTCTTTTATTATGCTATTATGAGGGTGCGTTATTATGCCATTGGT
CDS sequence (LotjaGi6g1v0284200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCGTCGCAGAAAACCAATGGGTCGTTCTCGAGGGAATTTTCAGCACGCCGATGAGGACCCCAACCAAAGGTCCAG GAGAAAAAAGAATGCTGCCAGTGGTGAAAATTTAGAATCTGGAGCTGCAGGTCAAGGAGTAAGTGAGGGGGGAAAGAAAG CTCTGTATCACTGCAATTATTGTAATAAAGATATTTCAGGGAAAATCCGTATTAAATGTGCCATGTGCCCGGATTTTGAC TTATGTATAGAGTGCTTTTCTGTTGGAGCTGAGGTGACACCTCACAAAAGCAATCACCCTTACAGGGTTATGGATAATTT GTCTTTCCCTCTTATTTGCCCGGACTGGAATGCAGATGATGAAATTTTGCTTCTAGAGGGAATTGAAATGTATGGCATGG GAAACTGGACAGAAGTTGCTGAGCATGTTGGGACAAAGAACAAACAATCATGCATAGAACACTATCAGAATGTATACTTG AACTCCCCGTTCTTTCCTCTTCCGGACATGTCTCATGTTGTTGGGAAAAACAGAAAAGAACTTCTCGCCATGGCAAAAGG GCACGGTGAGGACAAGAAAGGAATTTCTATGGGGGACCTTAGTGTAAAGGAAGAATCTCCCTTTTCTCCATCTAGAGTCA AAGTTGAAGATTCCCATAAAGCTGGTTCCGCTAACCGTTTGCCTTCCAGTTTGAATTCAGAGTTAGATTCTGGCCCTTCA GGTAGCGCACATGCAGCAGCTGGTGCTAACCAGAAGGCCTCCAATATGGCCCGAGGGAAAGGTGGTCCTGGAATCATTAA AATGGAAGATTCTCAAGGAGACAGAGATTTTGGAGGAAAGAAGCCAAATTCCTCAGGAAATGAAGGTCCTTCTTTAGTAG AAGCAAGTGGTTTTAACGCAAAAAGACAGGAATTTGATCCTGAATATGATAATGACGCTGAACAACTACTAGCTGAAATG GAATTTAAGGACAATGACACCGAGGAAGAGCGGGAGATAAAATTACGTGTCTTGCGTTTATATTCAAAAAGGCTTGATGA AAGAAAGCGTAGGAAGGATTTCATACTTGAAAGAAATTTGTTATACCCAAATCCATTTGAGAAGGATTTAACTCCTGAGG AGAAGGCAATATGTCGGAGATATGACTTATTCATGCGCTTTCACTCTAAGGAAGATCACCTGGAATTGCTTAGAACAGCT ATTTCTGAACACAGAACTTTTAGAAGACTTCAAGAGCTTAAGGAAGCCCGGGCTGCTGGTTGCCGCACTTCAGCTGAAGC AGAAAGATATCTGGTACAGAAGAGAAGAAGGGTAGCTGAAGAGAATGCTCTGAGGACAAAGGAAAGTGCTCTGCAGGTTG GCCCAAGCAGTCAGGCGGTTCCAAATGCATTAATGTCTCCAGACTCTACTGGCAAGGATATAAGCGTGAGACCTGCCACT TCAAGCTCTGTCAATGAAATCGATGTAACCGGATACTACGGAGCAGATTTACTTTCTGAACCTGAGAAACGCTTATGCTG CGAGCTAAGGTTGCCTCCAGCGGTGTATCTAAAGATGCAAGAGCAACTGTCTGTACAAATGATTGCTGGCAATGTCTCTA CAAAATCAGATGCTCACCAATTATTCAAGATGGACACCTTCAAAATTGACAGGGTGTATGATATGCTCATTAAAAAGGGA TTTGGTTCACCCTGA
Protein sequence (LotjaGi6g1v0284200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRRRKPMGRSRGNFQHADEDPNQRSRRKKNAASGENLESGAAGQGVSEGGKKALYHCNYCNKDISGKIRIKCAMCPDFD LCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGMGNWTEVAEHVGTKNKQSCIEHYQNVYL NSPFFPLPDMSHVVGKNRKELLAMAKGHGEDKKGISMGDLSVKEESPFSPSRVKVEDSHKAGSANRLPSSLNSELDSGPS GSAHAAAGANQKASNMARGKGGPGIIKMEDSQGDRDFGGKKPNSSGNEGPSLVEASGFNAKRQEFDPEYDNDAEQLLAEM EFKDNDTEEEREIKLRVLRLYSKRLDERKRRKDFILERNLLYPNPFEKDLTPEEKAICRRYDLFMRFHSKEDHLELLRTA ISEHRTFRRLQELKEARAAGCRTSAEAERYLVQKRRRVAEENALRTKESALQVGPSSQAVPNALMSPDSTGKDISVRPAT SSSVNEIDVTGYYGADLLSEPEKRLCCELRLPPAVYLKMQEQLSVQMIAGNVSTKSDAHQLFKMDTFKIDRVYDMLIKKG FGSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 48 | 48 | - | – | |
| PANTHER | 8 | 562 | 555 | 1.0E-225 | ||
| PANTHER | 8 | 562 | 555 | 1.0E-225 | – | |
| MobiDBLite | 12 | 34 | 23 | - | – | |
| PIRSF | 43 | 563 | 521 | 6.1E-149 | ||
| Gene3D | 50 | 105 | 56 | 3.2E-11 | ||
| SMART | 52 | 97 | 46 | 2.8E-11 | ||
| Pfam | 54 | 96 | 43 | 2.5E-9 | ||
| SUPERFAMILY | 56 | 118 | 63 | 1.01E-14 | – | |
| CDD | 56 | 104 | 49 | 1.82976E-27 | ||
| ProSiteProfiles | 56 | 99 | 44 | 10.869 | ||
| ProSitePatterns | 58 | 85 | 28 | - | ||
| SUPERFAMILY | 109 | 162 | 54 | 3.04E-12 | ||
| Gene3D | 111 | 161 | 51 | 4.4E-13 | – | |
| ProSiteProfiles | 111 | 163 | 53 | 20.001 | ||
| SMART | 112 | 161 | 50 | 1.0E-10 | ||
| Pfam | 115 | 158 | 44 | 3.4E-11 | ||
| CDD | 116 | 158 | 43 | 1.17359E-11 | ||
| MobiDBLite | 185 | 293 | 109 | - | – | |
| MobiDBLite | 185 | 199 | 15 | - | – | |
| MobiDBLite | 223 | 239 | 17 | - | – | |
| MobiDBLite | 458 | 477 | 20 | - | – | |
| SUPERFAMILY | 476 | 561 | 86 | 6.09E-19 | ||
| ProSiteProfiles | 478 | 564 | 87 | 12.086 | ||
| Gene3D | 479 | 562 | 84 | 3.8E-18 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Transcription coactivator activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Biological process | Regulation of histone acetylation | Any process that modulates the frequency, rate or extent of the addition of an acetyl group to a histone protein. |
Expression pattern of LotjaGi6g1v0284200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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