Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0304300 |
| Transcript ID | LotjaGi6g1v0304300.1 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-deoxy-D-xylulose-5-phosphate synthase 1; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|I1M1A4|I1M1A4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0304300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62171423..62176595) extracted from Lotus japonicus Gifu genome v1.2.
GTGAAACTGTCCGTCACTAATAATTTCCCCAATGATGTGGCCTAATGTGTGGACTGAAATTGAATACCTCACCCACACTC AAAAATTCAGACACAATATTGAATGTAAGAACTGAAACATGTGTTCTTCCCAATCGTAGACTTGACCTTAACCAAACAAT TAACATGGCTTGGTGCCTATATTCACTCCATTTAACTTCTGACTTTAAAGTTTAAACTCTCCATCAAATGACACATGTCC TTTCCTTCCTTATTATATATTCTTCATCTTTGAATCAATTCCCCACCACCATCACTTCTGGCCCTTCCACCTTGTGACAC TGTGTCTGAGTGACACATTGATTCACTCACCTTCTGTCATGGCTCTCTCTGCTGTATTCTCATCCCCTCTCCATTTGAAC CAAGCAACAACTCATCTGGGTTCTCACTCTAAATGGGGTGCAGATCTACTCTGCTTATCCCAACACAGACTTATCCAGGT TAGGACATGTTTTATTCAATTACTCACTAGAATTCAATCTTACTGTGTGAATGAAGGAAAACCCATGTTGGCAATTGGTG AAAAGACTATAGCTTTGAACTTGTTTCAAACTTTTATTTGTTTGTTTTTCCCCAATTTCACCTTTTTCTTATTCTTCTTC TTTTGGTTAGTTATTTTCAAGCATCAAATTGAGTTGTGATTTCTGAAAGAAATGTTTATCTTAGTCTGCTTCGGATAAAC AACTTAATTAAGTGCTTATGACGCTTATCGCATAAGCAGGGATAAGCGCTTATTATAAGCTAATTTAAGAAACTTAATGA AATAAGCTAAAACTAGGTTATGATAAACATAAACTCAAATTCATTAGCTAATATGAATAACTTACGAAAATAAGCTTAAA AAAGTGACTTATGCTATAAGATAAGCTCAAATAAGTTCTTCTAAACGTTGCCTTATTTTGAGTTGATGCAGGTTAGGAAA AGGACGTATGGGGTTTATGCATCACTATCAGAGATGGGGGAGTATCATTCACAGAGACCACCAACTCCTCTGCTTGACAC CATAAACTATCCAATTCATATGAAGAATCTCACTACAAAGGTATAGTAAATGAATACATATATAAGTTATGCTGGTTATT GGTTATAGTGAAAATTTGAATCTTAGAACTTGAAAAACATTGTTGCAGGAGCTGAAACAACTTGCGGATGAGCTGCGTTC TGATGTAATTTTCAAGGTTTCTAGAACTGGAGGTCACCTGGGGTCAAGCCTTGGTGTAGTGGAACTCACTGTTGCCCTCC ACTATGTTTTCAATGCTCCTAAAGATAAAATATTGTGGGATGTGGGTCATCAGGTTGGTTATTAACTATTATCAGGGTTT TAAATTCCGGTAAAGGGATTTCGAGTCCCCGCATTGGTATCGCGACCGCAATTGCGGTTGCACCAACCTGCATTTGCTTG CAATTCCGCAACGCAACTGCGACCACAATTTAAAACCCTAATGAATATTATTATTATTATTATTATTATTATTATTATTA TCATATTCTTTTGGTATTTCTTGGGAATGGCACTTGGTCTCAATTGTAATGAATTTTGCAGTCTTATCCACATAAAATGC TCACTGGTAGGAGGGGTAAGATGAATACCCTGAGGCAGACAGATGGACTATCTGGATTTACAAAACGCTCAGAGAGTGAA TATGATTGCTTTGGCACTGGTCACAGCTCAACAACAATATCAGCAGGGCTAGGTAATTCTTTTGTTGCTAGCTGAGTTTC AACATAGAATTTTTTAAGTCCATGGTTTAGATAAGTATATAATTAAGTTATTAGGACTAAGAATGGTTTACTGTTTTACA TCTCCAAGAGAATACTTAGCTGCAATTACACCACTGCTTGACATTGATGCACAATAGAACTTTGTGACTTAGCTCAAACC TATTTACTAATGCACAAACAGGAATGGCTGTTGGAAGGGATCTGAAGGGAGAAAAGGACAACGTGATTGCTGTAATTGGT GATGGTGCCATGACAGCTGGTCAAGCTTATGAAGCCATGAACAATGCTGGATATCTTGATTCTGATATGATTGTTATTCT AAATGATAATAGACAGGTCTCTCTACCAACTGCTACTCTTGATGGTCCCACCCCACCTGTAGGTGCTTTGAGTAGCGCTC TCAGCAGGTTACAATCAAATAGACCTCTCAGAGAACTGAGAGAGGTTGCAAAGGTGAGCACTGAGAAGCACAACTCACAA GTCTCAATCTGTTGAATGATTTTTGCAGATAGATACGAAGTTTTAGTGAAAATGATTCTTGACAACATGAGGATTTTGCA GGGAGTAACTAAACAAATTGGTGGCCCTATGCATGAATTGGCTGCAAAAGTTGATGAATATGCTCGCGGCATGATCAGCG GTTCTGGATCAACACTGTTTGAAGAGCTTGGGCTGTACTATATTGGTCCTGTTGATGGTCATAACATAGATGATCTTGTT GCCATTCTCAATGAAGTTAAAAGTACCAAAACAGCTGGTCCTGTACTTATCCATGTTGTCACTGAAAAAGGCCGCGGATA CCCATATGCAGAAAAAGCAGCAGACAAGTACCATGGTAAAAGAGCCACTACAAATTTCTTGACTAGCACCAACATAATTC ACCACGTAAATTTATCTTGCTAGGCTCACTCAGCTTTAGAATTTGTTGGAGTATTAATTGCATAGCTCTTATACCATCTT AAAATTCGTTATACAACTCTGGTAGGCCTAACTCTACCATCTTTAGAATGTATTAGGGTTAGGCCTAGCCCAAATTTTAA TAGAATGCACCAAGTACCTCTGAGGCCTGAGCCATCCATTAAAGATATAAAAAAAAATTTAACCTGCCTCTTGACAATTA CTGTCAATCACCATGCTTTAATAGTGGATCATAGCCATTTAGTTATTTCTAGAGAAACACACTACCTATAGGAAGCATTT TTAATCTGACTTGCTATATTCATCACAGGCATGTAACTTTGTTTGATTTTTCAGGAGTTACCAAGTTTGATCCAGCAACT GGGAAACAATTCAAAGCCAAGCCAACCACCCAGTCATACACAACATACTTTGCAGAAGCTTTGATTGCAGAAGCAGAAGC TGACAAAAACATTGTAGGAATCCATGCTGCAATGGGTGGTGGAACTGGCATGAATCTATTCCAGAAGTATTTCCCAACAA GATGCTTTGATGTGGGGATAGCAGAACAGCATGCCGTTACATTTGCTGCGGGTCTGGCTTGTGAAGGTCTTAAGCCTTTT TGTGTAATTTACTCATCATTCATGCAGAGAGCTTATGACCAGGTAAGATAACAACACACTCTAGTCTCTACATCTTCATC ATAGTATTGCTTTATAGTGTGTTTGGATAAATAGATAGTATTTATTGCATAAGTGCTTACTCATAAGCAAATTTGAGAAA CTTCAATAAGTTCAAAATAGATTATAAGTAGGTCTAAGCGCTTATTCATAAGCTAATCTCAGCAGCGTATGAAAATAAAA CAGCTTATAGGCAGGTCATAAGTTATTTAGTATTTACATAAGCTCTCCCGAACGCTTGCATGAGCACTTATACTATAAGA TAAACTCAAATAAGCAATTCCAAACAGGGCCTAAGTTAATAATGATTTCAAAAAGACATGCACAACATTGATTTTTGCAA ATAATGCTCAAAGTATGTGTTCCATGTCCTTTCCAAGGTGGTGCATGATGTGGATCTTCAGAAGCTGCCTGTAAGATTTG CAATGGACAGAGCTGGATTAGTTGGAGCAGATGGTCCAACCCACTGTGGTGCTTTTGATGTCACTTTTATGGCATGTCTC CCAAACATGGTTGTGATGGCTCCTTCTGATGAAGCAGAGCTTTTCCACATGGTTGCTACTGCAGCTACCATTGATGATCG ACCTAGTTGCCTCAGATATCCAAGGGGAAATGGGGTTGGTGTTGAATTACCACAATGGAACAAAGGCACTCCTCTTGAGG TAACTTCGAATTTTACCTGCATTCAAAACGTACCTTATGAAGTTGATTAGGAACAATTCTTGCAAATCAACTTCGTGCGT GTTTGGAAATCTGCATTTGATTCTGAGGAAAAGGAAACTAATCCAACCATGGTATTAACATTTGTGTTCTGACATCTTAA CAGATTGGAAAAGGTAGGATTTTGATTGGAGGGGAAAGAGTGGCCCTCTTGGGCTATGGATCAGCTGTTCAGAGCTGTGT GGCTGCAGCTTCCTTACTGGAACACCATGGCATGCATGTAACAGTGGCTGATGCACGTTTCTGCAAACCATTGGATCATT CCCTTATTCGTAGCCTAGCAAAATCACATGAGATTTTGATCACTGTAGAAGAAGGATCAATAGGGGGATTTGGGTCTCAT GTTGTTCAGTTCATGGCCCTTGATGGTCTTCTTGATGGAAAATTGAAGGTATGAAATTTGATGTAAAATAGTTACATTAA TTTCTTTTATACTAGCATACATGCACCTTTGAAGTTTCCATCAAAAACTCATGTGCCTTTCATTTAACTATTGCAGTGGA GGCCAATGGTTCTTCCTGATTGTTACATTGATCATGGATCACCTGCTGATCAATTGTCTCAAGCTGGTCTTACACCATCT CACATAGCAGCAACAGTTTTGAACATGCTTGGACAAACAAGAGAGGCACTAGAGGTCATGTCATGAAAGAAAATGCAACT GGGATGTCTTTCATTCCCCCTTAGTATACAGAGTAGCATGATTCATTCACCCTGTATAATACAGAGATAAGAGATGTTAG CATAAAATTAGTTAGTACAGGAGGAAAATGCAGATTATCACTCCAATTGGTTGTAATCGACCAAGAATATCAAATTTTAA TGGGTGTACAGAAATGCATTTTGTTTTCGGTTATCTATAGATGCTAAAATTATTTATTTTTGTATAAAGAAGTTTAGGAG AAAGAATTTAGGGCATGCACGAATTTGGTTTTAAGTGGTACTTGTAATTTGATCTACTAGTAAATGGAAAATTTGGATCC ACTGAAGTCTACTAAACCTATGATGCTGGCATTGCCAAGAAAAATATGTTTGGTTACTATATATCATTCACATGAATGTT TTTGAATAATATTTAATTAAAAAATATAAAAATAGAAAATGTGTGGAGAAGGA
CDS sequence (LotjaGi6g1v0304300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTCTCTGCTGTATTCTCATCCCCTCTCCATTTGAACCAAGCAACAACTCATCTGGGTTCTCACTCTAAATGGGG TGCAGATCTACTCTGCTTATCCCAACACAGACTTATCCAGGTTAGGAAAAGGACGTATGGGGTTTATGCATCACTATCAG AGATGGGGGAGTATCATTCACAGAGACCACCAACTCCTCTGCTTGACACCATAAACTATCCAATTCATATGAAGAATCTC ACTACAAAGGAGCTGAAACAACTTGCGGATGAGCTGCGTTCTGATGTAATTTTCAAGGTTTCTAGAACTGGAGGTCACCT GGGGTCAAGCCTTGGTGTAGTGGAACTCACTGTTGCCCTCCACTATGTTTTCAATGCTCCTAAAGATAAAATATTGTGGG ATGTGGGTCATCAGTCTTATCCACATAAAATGCTCACTGGTAGGAGGGGTAAGATGAATACCCTGAGGCAGACAGATGGA CTATCTGGATTTACAAAACGCTCAGAGAGTGAATATGATTGCTTTGGCACTGGTCACAGCTCAACAACAATATCAGCAGG GCTAGGAATGGCTGTTGGAAGGGATCTGAAGGGAGAAAAGGACAACGTGATTGCTGTAATTGGTGATGGTGCCATGACAG CTGGTCAAGCTTATGAAGCCATGAACAATGCTGGATATCTTGATTCTGATATGATTGTTATTCTAAATGATAATAGACAG GTCTCTCTACCAACTGCTACTCTTGATGGTCCCACCCCACCTGTAGGTGCTTTGAGTAGCGCTCTCAGCAGGTTACAATC AAATAGACCTCTCAGAGAACTGAGAGAGGTTGCAAAGGGAGTAACTAAACAAATTGGTGGCCCTATGCATGAATTGGCTG CAAAAGTTGATGAATATGCTCGCGGCATGATCAGCGGTTCTGGATCAACACTGTTTGAAGAGCTTGGGCTGTACTATATT GGTCCTGTTGATGGTCATAACATAGATGATCTTGTTGCCATTCTCAATGAAGTTAAAAGTACCAAAACAGCTGGTCCTGT ACTTATCCATGTTGTCACTGAAAAAGGCCGCGGATACCCATATGCAGAAAAAGCAGCAGACAAGTACCATGGAGTTACCA AGTTTGATCCAGCAACTGGGAAACAATTCAAAGCCAAGCCAACCACCCAGTCATACACAACATACTTTGCAGAAGCTTTG ATTGCAGAAGCAGAAGCTGACAAAAACATTGTAGGAATCCATGCTGCAATGGGTGGTGGAACTGGCATGAATCTATTCCA GAAGTATTTCCCAACAAGATGCTTTGATGTGGGGATAGCAGAACAGCATGCCGTTACATTTGCTGCGGGTCTGGCTTGTG AAGGTCTTAAGCCTTTTTGTGTAATTTACTCATCATTCATGCAGAGAGCTTATGACCAGGTGGTGCATGATGTGGATCTT CAGAAGCTGCCTGTAAGATTTGCAATGGACAGAGCTGGATTAGTTGGAGCAGATGGTCCAACCCACTGTGGTGCTTTTGA TGTCACTTTTATGGCATGTCTCCCAAACATGGTTGTGATGGCTCCTTCTGATGAAGCAGAGCTTTTCCACATGGTTGCTA CTGCAGCTACCATTGATGATCGACCTAGTTGCCTCAGATATCCAAGGGGAAATGGGGTTGGTGTTGAATTACCACAATGG AACAAAGGCACTCCTCTTGAGATTGGAAAAGGTAGGATTTTGATTGGAGGGGAAAGAGTGGCCCTCTTGGGCTATGGATC AGCTGTTCAGAGCTGTGTGGCTGCAGCTTCCTTACTGGAACACCATGGCATGCATGTAACAGTGGCTGATGCACGTTTCT GCAAACCATTGGATCATTCCCTTATTCGTAGCCTAGCAAAATCACATGAGATTTTGATCACTGTAGAAGAAGGATCAATA GGGGGATTTGGGTCTCATGTTGTTCAGTTCATGGCCCTTGATGGTCTTCTTGATGGAAAATTGAAGTGGAGGCCAATGGT TCTTCCTGATTGTTACATTGATCATGGATCACCTGCTGATCAATTGTCTCAAGCTGGTCTTACACCATCTCACATAGCAG CAACAGTTTTGAACATGCTTGGACAAACAAGAGAGGCACTAGAGGTCATGTCATGA
Protein sequence (LotjaGi6g1v0304300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALSAVFSSPLHLNQATTHLGSHSKWGADLLCLSQHRLIQVRKRTYGVYASLSEMGEYHSQRPPTPLLDTINYPIHMKNL TTKELKQLADELRSDVIFKVSRTGGHLGSSLGVVELTVALHYVFNAPKDKILWDVGHQSYPHKMLTGRRGKMNTLRQTDG LSGFTKRSESEYDCFGTGHSSTTISAGLGMAVGRDLKGEKDNVIAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNRQ VSLPTATLDGPTPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYI GPVDGHNIDDLVAILNEVKSTKTAGPVLIHVVTEKGRGYPYAEKAADKYHGVTKFDPATGKQFKAKPTTQSYTTYFAEAL IAEAEADKNIVGIHAAMGGGTGMNLFQKYFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCVIYSSFMQRAYDQVVHDVDL QKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMVVMAPSDEAELFHMVATAATIDDRPSCLRYPRGNGVGVELPQW NKGTPLEIGKGRILIGGERVALLGYGSAVQSCVAAASLLEHHGMHVTVADARFCKPLDHSLIRSLAKSHEILITVEEGSI GGFGSHVVQFMALDGLLDGKLKWRPMVLPDCYIDHGSPADQLSQAGLTPSHIAATVLNMLGQTREALEVMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 49 | 707 | 659 | 0.0 | – | |
| PANTHER | 49 | 707 | 659 | 0.0 | ||
| SUPERFAMILY | 65 | 452 | 388 | 1.16E-75 | ||
| Hamap | 67 | 701 | 635 | 42.06 | ||
| Pfam | 68 | 353 | 286 | 2.0E-112 | ||
| TIGRFAM | 70 | 700 | 631 | 1.4E-229 | ||
| ProSitePatterns | 93 | 112 | 20 | - | ||
| CDD | 104 | 359 | 256 | 4.62506E-123 | ||
| SUPERFAMILY | 387 | 577 | 191 | 1.73E-60 | ||
| Gene3D | 388 | 563 | 176 | 1.3E-65 | – | |
| SMART | 390 | 555 | 166 | 9.4E-68 | ||
| Pfam | 391 | 551 | 161 | 3.1E-43 | ||
| CDD | 407 | 549 | 143 | 2.95675E-67 | – | |
| ProSitePatterns | 496 | 512 | 17 | - | ||
| SUPERFAMILY | 564 | 700 | 137 | 1.44E-33 | ||
| Gene3D | 569 | 701 | 133 | 6.0E-33 | ||
| Pfam | 569 | 692 | 124 | 5.1E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 1-deoxy-D-xylulose-5-phosphate synthase activity | Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO(2). | ||
| Biological process | Terpenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. |
Expression pattern of LotjaGi6g1v0304300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…