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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0304300 |
| Transcript ID | LotjaGi6g1v0304300.3 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-deoxy-D-xylulose 5-phosphate synthase; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A067G5T2|A0A067G5T2_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0304300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62172094..62176128) extracted from Lotus japonicus Gifu genome v1.2.
AGTTGTGATTTCTGAAAGAAATGTTTATCTTAGTCTGCTTCGGATAAACAACTTAATTAAGTGCTTATGACGCTTATCGC ATAAGCAGGGATAAGCGCTTATTATAAGCTAATTTAAGAAACTTAATGAAATAAGCTAAAACTAGGTTATGATAAACATA AACTCAAATTCATTAGCTAATATGAATAACTTACGAAAATAAGCTTAAAAAAGTGACTTATGCTATAAGATAAGCTCAAA TAAGTTCTTCTAAACGTTGCCTTATTTTGAGTTGATGCAGGTTAGGAAAAGGACGTATGGGGTTTATGCATCACTATCAG AGATGGGGGAGTATCATTCACAGAGACCACCAACTCCTCTGCTTGACACCATAAACTATCCAATTCATATGAAGAATCTC ACTACAAAGGTATAGTAAATGAATACATATATAAGTTATGCTGGTTATTGGTTATAGTGAAAATTTGAATCTTAGAACTT GAAAAACATTGTTGCAGGAGCTGAAACAACTTGCGGATGAGCTGCGTTCTGATGTAATTTTCAAGGTTTCTAGAACTGGA GGTCACCTGGGGTCAAGCCTTGGTGTAGTGGAACTCACTGTTGCCCTCCACTATGTTTTCAATGCTCCTAAAGATAAAAT ATTGTGGGATGTGGGTCATCAGGTTGGTTATTAACTATTATCAGGGTTTTAAATTCCGGTAAAGGGATTTCGAGTCCCCG CATTGGTATCGCGACCGCAATTGCGGTTGCACCAACCTGCATTTGCTTGCAATTCCGCAACGCAACTGCGACCACAATTT AAAACCCTAATGAATATTATTATTATTATTATTATTATTATTATTATTATCATATTCTTTTGGTATTTCTTGGGAATGGC ACTTGGTCTCAATTGTAATGAATTTTGCAGTCTTATCCACATAAAATGCTCACTGGTAGGAGGGGTAAGATGAATACCCT GAGGCAGACAGATGGACTATCTGGATTTACAAAACGCTCAGAGAGTGAATATGATTGCTTTGGCACTGGTCACAGCTCAA CAACAATATCAGCAGGGCTAGGTAATTCTTTTGTTGCTAGCTGAGTTTCAACATAGAATTTTTTAAGTCCATGGTTTAGA TAAGTATATAATTAAGTTATTAGGACTAAGAATGGTTTACTGTTTTACATCTCCAAGAGAATACTTAGCTGCAATTACAC CACTGCTTGACATTGATGCACAATAGAACTTTGTGACTTAGCTCAAACCTATTTACTAATGCACAAACAGGAATGGCTGT TGGAAGGGATCTGAAGGGAGAAAAGGACAACGTGATTGCTGTAATTGGTGATGGTGCCATGACAGCTGGTCAAGCTTATG AAGCCATGAACAATGCTGGATATCTTGATTCTGATATGATTGTTATTCTAAATGATAATAGACAGGTCTCTCTACCAACT GCTACTCTTGATGGTCCCACCCCACCTGTAGGTGCTTTGAGTAGCGCTCTCAGCAGGTTACAATCAAATAGACCTCTCAG AGAACTGAGAGAGGTTGCAAAGGTGAGCACTGAGAAGCACAACTCACAAGTCTCAATCTGTTGAATGATTTTTGCAGATA GATACGAAGTTTTAGTGAAAATGATTCTTGACAACATGAGGATTTTGCAGGGAGTAACTAAACAAATTGGTGGCCCTATG CATGAATTGGCTGCAAAAGTTGATGAATATGCTCGCGGCATGATCAGCGGTTCTGGATCAACACTGTTTGAAGAGCTTGG GCTGTACTATATTGGTCCTGTTGATGGTCATAACATAGATGATCTTGTTGCCATTCTCAATGAAGTTAAAAGTACCAAAA CAGCTGGTCCTGTACTTATCCATGTTGTCACTGAAAAAGGCCGCGGATACCCATATGCAGAAAAAGCAGCAGACAAGTAC CATGGTAAAAGAGCCACTACAAATTTCTTGACTAGCACCAACATAATTCACCACGTAAATTTATCTTGCTAGGCTCACTC AGCTTTAGAATTTGTTGGAGTATTAATTGCATAGCTCTTATACCATCTTAAAATTCGTTATACAACTCTGGTAGGCCTAA CTCTACCATCTTTAGAATGTATTAGGGTTAGGCCTAGCCCAAATTTTAATAGAATGCACCAAGTACCTCTGAGGCCTGAG CCATCCATTAAAGATATAAAAAAAAATTTAACCTGCCTCTTGACAATTACTGTCAATCACCATGCTTTAATAGTGGATCA TAGCCATTTAGTTATTTCTAGAGAAACACACTACCTATAGGAAGCATTTTTAATCTGACTTGCTATATTCATCACAGGCA TGTAACTTTGTTTGATTTTTCAGGAGTTACCAAGTTTGATCCAGCAACTGGGAAACAATTCAAAGCCAAGCCAACCACCC AGTCATACACAACATACTTTGCAGAAGCTTTGATTGCAGAAGCAGAAGCTGACAAAAACATTGTAGGAATCCATGCTGCA ATGGGTGGTGGAACTGGCATGAATCTATTCCAGAAGTATTTCCCAACAAGATGCTTTGATGTGGGGATAGCAGAACAGCA TGCCGTTACATTTGCTGCGGGTCTGGCTTGTGAAGGTCTTAAGCCTTTTTGTGTAATTTACTCATCATTCATGCAGAGAG CTTATGACCAGGTAAGATAACAACACACTCTAGTCTCTACATCTTCATCATAGTATTGCTTTATAGTGTGTTTGGATAAA TAGATAGTATTTATTGCATAAGTGCTTACTCATAAGCAAATTTGAGAAACTTCAATAAGTTCAAAATAGATTATAAGTAG GTCTAAGCGCTTATTCATAAGCTAATCTCAGCAGCGTATGAAAATAAAACAGCTTATAGGCAGGTCATAAGTTATTTAGT ATTTACATAAGCTCTCCCGAACGCTTGCATGAGCACTTATACTATAAGATAAACTCAAATAAGCAATTCCAAACAGGGCC TAAGTTAATAATGATTTCAAAAAGACATGCACAACATTGATTTTTGCAAATAATGCTCAAAGTATGTGTTCCATGTCCTT TCCAAGGTGGTGCATGATGTGGATCTTCAGAAGCTGCCTGTAAGATTTGCAATGGACAGAGCTGGATTAGTTGGAGCAGA TGGTCCAACCCACTGTGGTGCTTTTGATGTCACTTTTATGGCATGTCTCCCAAACATGGTTGTGATGGCTCCTTCTGATG AAGCAGAGCTTTTCCACATGGTTGCTACTGCAGCTACCATTGATGATCGACCTAGTTGCCTCAGATATCCAAGGGGAAAT GGGGTTGGTGTTGAATTACCACAATGGAACAAAGGCACTCCTCTTGAGGTAACTTCGAATTTTACCTGCATTCAAAACGT ACCTTATGAAGTTGATTAGGAACAATTCTTGCAAATCAACTTCGTGCGTGTTTGGAAATCTGCATTTGATTCTGAGGAAA AGGAAACTAATCCAACCATGGTATTAACATTTGTGTTCTGACATCTTAACAGATTGGAAAAGGTAGGATTTTGATTGGAG GGGAAAGAGTGGCCCTCTTGGGCTATGGATCAGCTGTTCAGAGCTGTGTGGCTGCAGCTTCCTTACTGGAACACCATGGC ATGCATGTAACAGTGGCTGATGCACGTTTCTGCAAACCATTGGATCATTCCCTTATTCGTAGCCTAGCAAAATCACATGA GATTTTGATCACTGTAGAAGAAGGATCAATAGGGGGATTTGGGTCTCATGTTGTTCAGTTCATGGCCCTTGATGGTCTTC TTGATGGAAAATTGAAGGTATGAAATTTGATGTAAAATAGTTACATTAATTTCTTTTATACTAGCATACATGCACCTTTG AAGTTTCCATCAAAAACTCATGTGCCTTTCATTTAACTATTGCAGTGGAGGCCAATGGTTCTTCCTGATTGTTACATTGA TCATGGATCACCTGCTGATCAATTGTCTCAAGCTGGTCTTACACCATCTCACATAGCAGCAACAGTTTTGAACATGCTTG GACAAACAAGAGAGGCACTAGAGGTCATGTCATGA
CDS sequence (LotjaGi6g1v0304300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGAGTATCATTCACAGAGACCACCAACTCCTCTGCTTGACACCATAAACTATCCAATTCATATGAAGAATCTCAC TACAAAGGAGCTGAAACAACTTGCGGATGAGCTGCGTTCTGATGTAATTTTCAAGGTTTCTAGAACTGGAGGTCACCTGG GGTCAAGCCTTGGTGTAGTGGAACTCACTGTTGCCCTCCACTATGTTTTCAATGCTCCTAAAGATAAAATATTGTGGGAT GTGGGTCATCAGTCTTATCCACATAAAATGCTCACTGGTAGGAGGGGTAAGATGAATACCCTGAGGCAGACAGATGGACT ATCTGGATTTACAAAACGCTCAGAGAGTGAATATGATTGCTTTGGCACTGGTCACAGCTCAACAACAATATCAGCAGGGC TAGGAATGGCTGTTGGAAGGGATCTGAAGGGAGAAAAGGACAACGTGATTGCTGTAATTGGTGATGGTGCCATGACAGCT GGTCAAGCTTATGAAGCCATGAACAATGCTGGATATCTTGATTCTGATATGATTGTTATTCTAAATGATAATAGACAGGT CTCTCTACCAACTGCTACTCTTGATGGTCCCACCCCACCTGTAGGTGCTTTGAGTAGCGCTCTCAGCAGGTTACAATCAA ATAGACCTCTCAGAGAACTGAGAGAGGTTGCAAAGGGAGTAACTAAACAAATTGGTGGCCCTATGCATGAATTGGCTGCA AAAGTTGATGAATATGCTCGCGGCATGATCAGCGGTTCTGGATCAACACTGTTTGAAGAGCTTGGGCTGTACTATATTGG TCCTGTTGATGGTCATAACATAGATGATCTTGTTGCCATTCTCAATGAAGTTAAAAGTACCAAAACAGCTGGTCCTGTAC TTATCCATGTTGTCACTGAAAAAGGCCGCGGATACCCATATGCAGAAAAAGCAGCAGACAAGTACCATGGAGTTACCAAG TTTGATCCAGCAACTGGGAAACAATTCAAAGCCAAGCCAACCACCCAGTCATACACAACATACTTTGCAGAAGCTTTGAT TGCAGAAGCAGAAGCTGACAAAAACATTGTAGGAATCCATGCTGCAATGGGTGGTGGAACTGGCATGAATCTATTCCAGA AGTATTTCCCAACAAGATGCTTTGATGTGGGGATAGCAGAACAGCATGCCGTTACATTTGCTGCGGGTCTGGCTTGTGAA GGTCTTAAGCCTTTTTGTGTAATTTACTCATCATTCATGCAGAGAGCTTATGACCAGGTGGTGCATGATGTGGATCTTCA GAAGCTGCCTGTAAGATTTGCAATGGACAGAGCTGGATTAGTTGGAGCAGATGGTCCAACCCACTGTGGTGCTTTTGATG TCACTTTTATGGCATGTCTCCCAAACATGGTTGTGATGGCTCCTTCTGATGAAGCAGAGCTTTTCCACATGGTTGCTACT GCAGCTACCATTGATGATCGACCTAGTTGCCTCAGATATCCAAGGGGAAATGGGGTTGGTGTTGAATTACCACAATGGAA CAAAGGCACTCCTCTTGAGATTGGAAAAGGTAGGATTTTGATTGGAGGGGAAAGAGTGGCCCTCTTGGGCTATGGATCAG CTGTTCAGAGCTGTGTGGCTGCAGCTTCCTTACTGGAACACCATGGCATGCATGTAACAGTGGCTGATGCACGTTTCTGC AAACCATTGGATCATTCCCTTATTCGTAGCCTAGCAAAATCACATGAGATTTTGATCACTGTAGAAGAAGGATCAATAGG GGGATTTGGGTCTCATGTTGTTCAGTTCATGGCCCTTGATGGTCTTCTTGATGGAAAATTGAAGTGGAGGCCAATGGTTC TTCCTGATTGTTACATTGATCATGGATCACCTGCTGATCAATTGTCTCAAGCTGGTCTTACACCATCTCACATAGCAGCA ACAGTTTTGAACATGCTTGGACAAACAAGAGAGGCACTAGAGGTCATGTCATGA
Protein sequence (LotjaGi6g1v0304300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEYHSQRPPTPLLDTINYPIHMKNLTTKELKQLADELRSDVIFKVSRTGGHLGSSLGVVELTVALHYVFNAPKDKILWD VGHQSYPHKMLTGRRGKMNTLRQTDGLSGFTKRSESEYDCFGTGHSSTTISAGLGMAVGRDLKGEKDNVIAVIGDGAMTA GQAYEAMNNAGYLDSDMIVILNDNRQVSLPTATLDGPTPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAA KVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVAILNEVKSTKTAGPVLIHVVTEKGRGYPYAEKAADKYHGVTK FDPATGKQFKAKPTTQSYTTYFAEALIAEAEADKNIVGIHAAMGGGTGMNLFQKYFPTRCFDVGIAEQHAVTFAAGLACE GLKPFCVIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMVVMAPSDEAELFHMVAT AATIDDRPSCLRYPRGNGVGVELPQWNKGTPLEIGKGRILIGGERVALLGYGSAVQSCVAAASLLEHHGMHVTVADARFC KPLDHSLIRSLAKSHEILITVEEGSIGGFGSHVVQFMALDGLLDGKLKWRPMVLPDCYIDHGSPADQLSQAGLTPSHIAA TVLNMLGQTREALEVMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 653 | 652 | 0.0 | ||
| PANTHER | 2 | 653 | 652 | 0.0 | – | |
| SUPERFAMILY | 11 | 398 | 388 | 1.0E-75 | ||
| Hamap | 13 | 647 | 635 | 42.06 | ||
| Pfam | 14 | 299 | 286 | 1.7E-112 | ||
| TIGRFAM | 16 | 646 | 631 | 1.0E-229 | ||
| ProSitePatterns | 39 | 58 | 20 | - | ||
| CDD | 50 | 305 | 256 | 1.29091E-123 | ||
| SUPERFAMILY | 333 | 523 | 191 | 1.49E-60 | ||
| Gene3D | 334 | 509 | 176 | 1.2E-65 | – | |
| SMART | 336 | 501 | 166 | 9.4E-68 | ||
| Pfam | 337 | 497 | 161 | 2.7E-43 | ||
| CDD | 353 | 495 | 143 | 1.91734E-67 | – | |
| ProSitePatterns | 442 | 458 | 17 | - | ||
| SUPERFAMILY | 510 | 646 | 137 | 1.22E-33 | ||
| Gene3D | 515 | 647 | 133 | 5.3E-33 | ||
| Pfam | 515 | 638 | 124 | 4.5E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 1-deoxy-D-xylulose-5-phosphate synthase activity | Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO(2). | ||
| Biological process | Terpenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. |
Expression pattern of LotjaGi6g1v0304300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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