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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0304300 |
| Transcript ID | LotjaGi6g1v0304300.6 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-deoxy-D-xylulose-5-phosphate synthase 1; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A067G5T2|A0A067G5T2_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0304300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62172127..62176128) extracted from Lotus japonicus Gifu genome v1.2.
TCTGCTTCGGATAAACAACTTAATTAAGTGCTTATGACGCTTATCGCATAAGCAGGGATAAGCGCTTATTATAAGCTAAT TTAAGAAACTTAATGAAATAAGCTAAAACTAGGTTATGATAAACATAAACTCAAATTCATTAGCTAATATGAATAACTTA CGAAAATAAGCTTAAAAAAGTGACTTATGCTATAAGATAAGCTCAAATAAGTTCTTCTAAACGTTGCCTTATTTTGAGTT GATGCAGGTTAGGAAAAGGACGTATGGGGTTTATGCATCACTATCAGAGATGGGGGAGTATCATTCACAGAGACCACCAA CTCCTCTGCTTGACACCATAAACTATCCAATTCATATGAAGAATCTCACTACAAAGGTATAGTAAATGAATACATATATA AGTTATGCTGGTTATTGGTTATAGTGAAAATTTGAATCTTAGAACTTGAAAAACATTGTTGCAGGAGCTGAAACAACTTG CGGATGAGCTGCGTTCTGATGTAATTTTCAAGGTTTCTAGAACTGGAGGTCACCTGGGGTCAAGCCTTGGTGTAGTGGAA CTCACTGTTGCCCTCCACTATGTTTTCAATGCTCCTAAAGATAAAATATTGTGGGATGTGGGTCATCAGGTTGGTTATTA ACTATTATCAGGGTTTTAAATTCCGGTAAAGGGATTTCGAGTCCCCGCATTGGTATCGCGACCGCAATTGCGGTTGCACC AACCTGCATTTGCTTGCAATTCCGCAACGCAACTGCGACCACAATTTAAAACCCTAATGAATATTATTATTATTATTATT ATTATTATTATTATTATCATATTCTTTTGGTATTTCTTGGGAATGGCACTTGGTCTCAATTGTAATGAATTTTGCAGTCT TATCCACATAAAATGCTCACTGGTAGGAGGGGTAAGATGAATACCCTGAGGCAGACAGATGGACTATCTGGATTTACAAA ACGCTCAGAGAGTGAATATGATTGCTTTGGCACTGGTCACAGCTCAACAACAATATCAGCAGGGCTAGGTAATTCTTTTG TTGCTAGCTGAGTTTCAACATAGAATTTTTTAAGTCCATGGTTTAGATAAGTATATAATTAAGTTATTAGGACTAAGAAT GGTTTACTGTTTTACATCTCCAAGAGAATACTTAGCTGCAATTACACCACTGCTTGACATTGATGCACAATAGAACTTTG TGACTTAGCTCAAACCTATTTACTAATGCACAAACAGGAATGGCTGTTGGAAGGGATCTGAAGGGAGAAAAGGACAACGT GATTGCTGTAATTGGTGATGGTGCCATGACAGCTGGTCAAGCTTATGAAGCCATGAACAATGCTGGATATCTTGATTCTG ATATGATTGTTATTCTAAATGATAATAGACAGGTCTCTCTACCAACTGCTACTCTTGATGGTCCCACCCCACCTGTAGGT GCTTTGAGTAGCGCTCTCAGCAGGTTACAATCAAATAGACCTCTCAGAGAACTGAGAGAGGTTGCAAAGGTGAGCACTGA GAAGCACAACTCACAAGTCTCAATCTGTTGAATGATTTTTGCAGATAGATACGAAGTTTTAGTGAAAATGATTCTTGACA ACATGAGGATTTTGCAGGGAGTAACTAAACAAATTGGTGGCCCTATGCATGAATTGGCTGCAAAAGTTGATGAATATGCT CGCGGCATGATCAGCGGTTCTGGATCAACACTGTTTGAAGAGCTTGGGCTGTACTATATTGGTCCTGTTGATGGTCATAA CATAGATGATCTTGTTGCCATTCTCAATGAAGTTAAAAGTACCAAAACAGCTGGTCCTGTACTTATCCATGTTGTCACTG AAAAAGGCCGCGGATACCCATATGCAGAAAAAGCAGCAGACAAGTACCATGGTAAAAGAGCCACTACAAATTTCTTGACT AGCACCAACATAATTCACCACGTAAATTTATCTTGCTAGGCTCACTCAGCTTTAGAATTTGTTGGAGTATTAATTGCATA GCTCTTATACCATCTTAAAATTCGTTATACAACTCTGGTAGGCCTAACTCTACCATCTTTAGAATGTATTAGGGTTAGGC CTAGCCCAAATTTTAATAGAATGCACCAAGTACCTCTGAGGCCTGAGCCATCCATTAAAGATATAAAAAAAAATTTAACC TGCCTCTTGACAATTACTGTCAATCACCATGCTTTAATAGTGGATCATAGCCATTTAGTTATTTCTAGAGAAACACACTA CCTATAGGAAGCATTTTTAATCTGACTTGCTATATTCATCACAGGCATGTAACTTTGTTTGATTTTTCAGGAGTTACCAA GTTTGATCCAGCAACTGGGAAACAATTCAAAGCCAAGCCAACCACCCAGTCATACACAACATACTTTGCAGAAGCTTTGA TTGCAGAAGCAGAAGCTGACAAAAACATTGTAGGAATCCATGCTGCAATGGGTGGTGGAACTGGCATGAATCTATTCCAG AAGTATTTCCCAACAAGATGCTTTGATGTGGGGATAGCAGAACAGCATGCCGTTACATTTGCTGCGGGTCTGGCTTGTGA AGGTCTTAAGCCTTTTTGTGTAATTTACTCATCATTCATGCAGAGAGCTTATGACCAGGTAAGATAACAACACACTCTAG TCTCTACATCTTCATCATAGTATTGCTTTATAGTGTGTTTGGATAAATAGATAGTATTTATTGCATAAGTGCTTACTCAT AAGCAAATTTGAGAAACTTCAATAAGTTCAAAATAGATTATAAGTAGGTCTAAGCGCTTATTCATAAGCTAATCTCAGCA GCGTATGAAAATAAAACAGCTTATAGGCAGGTCATAAGTTATTTAGTATTTACATAAGCTCTCCCGAACGCTTGCATGAG CACTTATACTATAAGATAAACTCAAATAAGCAATTCCAAACAGGGCCTAAGTTAATAATGATTTCAAAAAGACATGCACA ACATTGATTTTTGCAAATAATGCTCAAAGTATGTGTTCCATGTCCTTTCCAAGGTGGTGCATGATGTGGATCTTCAGAAG CTGCCTGTAAGATTTGCAATGGACAGAGCTGGATTAGTTGGAGCAGATGGTCCAACCCACTGTGGTGCTTTTGATGTCAC TTTTATGGCATGTCTCCCAAACATGGTTGTGATGGCTCCTTCTGATGAAGCAGAGCTTTTCCACATGGTTGCTACTGCAG CTACCATTGATGATCGACCTAGTTGCCTCAGATATCCAAGGGGAAATGGGGTTGGTGTTGAATTACCACAATGGAACAAA GGCACTCCTCTTGAGGTAACTTCGAATTTTACCTGCATTCAAAACGTACCTTATGAAGTTGATTAGGAACAATTCTTGCA AATCAACTTCGTGCGTGTTTGGAAATCTGCATTTGATTCTGAGGAAAAGGAAACTAATCCAACCATGGTATTAACATTTG TGTTCTGACATCTTAACAGATTGGAAAAGGTAGGATTTTGATTGGAGGGGAAAGAGTGGCCCTCTTGGGCTATGGATCAG CTGTTCAGAGCTGTGTGGCTGCAGCTTCCTTACTGGAACACCATGGCATGCATGTAACAGTGGCTGATGCACGTTTCTGC AAACCATTGGATCATTCCCTTATTCGTAGCCTAGCAAAATCACATGAGATTTTGATCACTGTAGAAGAAGGATCAATAGG GGGATTTGGGTCTCATGTTGTTCAGTTCATGGCCCTTGATGGTCTTCTTGATGGAAAATTGAAGGTATGAAATTTGATGT AAAATAGTTACATTAATTTCTTTTATACTAGCATACATGCACCTTTGAAGTTTCCATCAAAAACTCATGTGCCTTTCATT TAACTATTGCAGTGGAGGCCAATGGTTCTTCCTGATTGTTACATTGATCATGGATCACCTGCTGATCAATTGTCTCAAGC TGGTCTTACACCATCTCACATAGCAGCAACAGTTTTGAACATGCTTGGACAAACAAGAGAGGCACTAGAGGTCATGTCAT GA
CDS sequence (LotjaGi6g1v0304300.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGAGTATCATTCACAGAGACCACCAACTCCTCTGCTTGACACCATAAACTATCCAATTCATATGAAGAATCTCAC TACAAAGGAGCTGAAACAACTTGCGGATGAGCTGCGTTCTGATGTAATTTTCAAGGTTTCTAGAACTGGAGGTCACCTGG GGTCAAGCCTTGGTGTAGTGGAACTCACTGTTGCCCTCCACTATGTTTTCAATGCTCCTAAAGATAAAATATTGTGGGAT GTGGGTCATCAGTCTTATCCACATAAAATGCTCACTGGTAGGAGGGGTAAGATGAATACCCTGAGGCAGACAGATGGACT ATCTGGATTTACAAAACGCTCAGAGAGTGAATATGATTGCTTTGGCACTGGTCACAGCTCAACAACAATATCAGCAGGGC TAGGAATGGCTGTTGGAAGGGATCTGAAGGGAGAAAAGGACAACGTGATTGCTGTAATTGGTGATGGTGCCATGACAGCT GGTCAAGCTTATGAAGCCATGAACAATGCTGGATATCTTGATTCTGATATGATTGTTATTCTAAATGATAATAGACAGGT CTCTCTACCAACTGCTACTCTTGATGGTCCCACCCCACCTGTAGGTGCTTTGAGTAGCGCTCTCAGCAGGTTACAATCAA ATAGACCTCTCAGAGAACTGAGAGAGGTTGCAAAGGGAGTAACTAAACAAATTGGTGGCCCTATGCATGAATTGGCTGCA AAAGTTGATGAATATGCTCGCGGCATGATCAGCGGTTCTGGATCAACACTGTTTGAAGAGCTTGGGCTGTACTATATTGG TCCTGTTGATGGTCATAACATAGATGATCTTGTTGCCATTCTCAATGAAGTTAAAAGTACCAAAACAGCTGGTCCTGTAC TTATCCATGTTGTCACTGAAAAAGGCCGCGGATACCCATATGCAGAAAAAGCAGCAGACAAGTACCATGGAGTTACCAAG TTTGATCCAGCAACTGGGAAACAATTCAAAGCCAAGCCAACCACCCAGTCATACACAACATACTTTGCAGAAGCTTTGAT TGCAGAAGCAGAAGCTGACAAAAACATTGTAGGAATCCATGCTGCAATGGGTGAACAGCATGCCGTTACATTTGCTGCGG GTCTGGCTTGTGAAGGTCTTAAGCCTTTTTGTGTAATTTACTCATCATTCATGCAGAGAGCTTATGACCAGGTGGTGCAT GATGTGGATCTTCAGAAGCTGCCTGTAAGATTTGCAATGGACAGAGCTGGATTAGTTGGAGCAGATGGTCCAACCCACTG TGGTGCTTTTGATGTCACTTTTATGGCATGTCTCCCAAACATGGTTGTGATGGCTCCTTCTGATGAAGCAGAGCTTTTCC ACATGGTTGCTACTGCAGCTACCATTGATGATCGACCTAGTTGCCTCAGATATCCAAGGGGAAATGGGGTTGGTGTTGAA TTACCACAATGGAACAAAGGCACTCCTCTTGAGATTGGAAAAGGTAGGATTTTGATTGGAGGGGAAAGAGTGGCCCTCTT GGGCTATGGATCAGCTGTTCAGAGCTGTGTGGCTGCAGCTTCCTTACTGGAACACCATGGCATGCATGTAACAGTGGCTG ATGCACGTTTCTGCAAACCATTGGATCATTCCCTTATTCGTAGCCTAGCAAAATCACATGAGATTTTGATCACTGTAGAA GAAGGATCAATAGGGGGATTTGGGTCTCATGTTGTTCAGTTCATGGCCCTTGATGGTCTTCTTGATGGAAAATTGAAGTG GAGGCCAATGGTTCTTCCTGATTGTTACATTGATCATGGATCACCTGCTGATCAATTGTCTCAAGCTGGTCTTACACCAT CTCACATAGCAGCAACAGTTTTGAACATGCTTGGACAAACAAGAGAGGCACTAGAGGTCATGTCATGA
Protein sequence (LotjaGi6g1v0304300.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEYHSQRPPTPLLDTINYPIHMKNLTTKELKQLADELRSDVIFKVSRTGGHLGSSLGVVELTVALHYVFNAPKDKILWD VGHQSYPHKMLTGRRGKMNTLRQTDGLSGFTKRSESEYDCFGTGHSSTTISAGLGMAVGRDLKGEKDNVIAVIGDGAMTA GQAYEAMNNAGYLDSDMIVILNDNRQVSLPTATLDGPTPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAA KVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVAILNEVKSTKTAGPVLIHVVTEKGRGYPYAEKAADKYHGVTK FDPATGKQFKAKPTTQSYTTYFAEALIAEAEADKNIVGIHAAMGEQHAVTFAAGLACEGLKPFCVIYSSFMQRAYDQVVH DVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMVVMAPSDEAELFHMVATAATIDDRPSCLRYPRGNGVGVE LPQWNKGTPLEIGKGRILIGGERVALLGYGSAVQSCVAAASLLEHHGMHVTVADARFCKPLDHSLIRSLAKSHEILITVE EGSIGGFGSHVVQFMALDGLLDGKLKWRPMVLPDCYIDHGSPADQLSQAGLTPSHIAATVLNMLGQTREALEVMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 364 | 363 | 0.0 | ||
| PANTHER | 2 | 364 | 363 | 0.0 | – | |
| SUPERFAMILY | 11 | 364 | 354 | 3.07E-72 | ||
| Hamap | 13 | 625 | 613 | 38.93 | ||
| Pfam | 14 | 299 | 286 | 1.5E-112 | ||
| ProSitePatterns | 39 | 58 | 20 | - | ||
| CDD | 50 | 305 | 256 | 7.17183E-124 | ||
| SUPERFAMILY | 308 | 475 | 168 | 2.44E-49 | ||
| Gene3D | 321 | 480 | 160 | 1.5E-48 | – | |
| SMART | 336 | 479 | 144 | 4.5E-50 | ||
| CDD | 353 | 473 | 121 | 6.67533E-51 | – | |
| Pfam | 360 | 475 | 116 | 3.5E-29 | ||
| PANTHER | 365 | 631 | 267 | 0.0 | ||
| PANTHER | 365 | 631 | 267 | 0.0 | – | |
| ProSitePatterns | 420 | 436 | 17 | - | ||
| SUPERFAMILY | 488 | 624 | 137 | 1.15E-33 | ||
| Gene3D | 493 | 625 | 133 | 5.0E-33 | ||
| Pfam | 493 | 616 | 124 | 4.3E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 1-deoxy-D-xylulose-5-phosphate synthase activity | Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO(2). | ||
| Biological process | Terpenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. |
Expression pattern of LotjaGi6g1v0304300.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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