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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0304300 |
| Transcript ID | LotjaGi6g1v0304300.8 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-deoxy-D-xylulose-5-phosphate synthase 1; TAIR: AT4G15560.1 Deoxyxylulose-5-phosphate synthase; Swiss-Prot: sp|O78328|DXS_CAPAN Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic; TrEMBL-Plants: tr|A0A067G5T2|A0A067G5T2_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0304300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62172260..62176128) extracted from Lotus japonicus Gifu genome v1.2.
AATTCATTAGCTAATATGAATAACTTACGAAAATAAGCTTAAAAAAGTGACTTATGCTATAAGATAAGCTCAAATAAGTT CTTCTAAACGTTGCCTTATTTTGAGTTGATGCAGGTTAGGAAAAGGACGTATGGGGTTTATGCATCACTATCAGAGATGG GGGAGTATCATTCACAGAGACCACCAACTCCTCTGCTTGACACCATAAACTATCCAATTCATATGAAGAATCTCACTACA AAGGTATAGTAAATGAATACATATATAAGTTATGCTGGTTATTGGTTATAGTGAAAATTTGAATCTTAGAACTTGAAAAA CATTGTTGCAGGAGCTGAAACAACTTGCGGATGAGCTGCGTTCTGATGTAATTTTCAAGGTTTCTAGAACTGGAGGTCAC CTGGGGTCAAGCCTTGGTGTAGTGGAACTCACTGTTGCCCTCCACTATGTTTTCAATGCTCCTAAAGATAAAATATTGTG GGATGTGGGTCATCAGGTTGGTTATTAACTATTATCAGGGTTTTAAATTCCGGTAAAGGGATTTCGAGTCCCCGCATTGG TATCGCGACCGCAATTGCGGTTGCACCAACCTGCATTTGCTTGCAATTCCGCAACGCAACTGCGACCACAATTTAAAACC CTAATGAATATTATTATTATTATTATTATTATTATTATTATTATCATATTCTTTTGGTATTTCTTGGGAATGGCACTTGG TCTCAATTGTAATGAATTTTGCAGTCTTATCCACATAAAATGCTCACTGGTAGGAGGGGTAAGATGAATACCCTGAGGCA GACAGATGGACTATCTGGATTTACAAAACGCTCAGAGAGTGAATATGATTGCTTTGGCACTGGTCACAGCTCAACAACAA TATCAGCAGGGCTAGGTAATTCTTTTGTTGCTAGCTGAGTTTCAACATAGAATTTTTTAAGTCCATGGTTTAGATAAGTA TATAATTAAGTTATTAGGACTAAGAATGGTTTACTGTTTTACATCTCCAAGAGAATACTTAGCTGCAATTACACCACTGC TTGACATTGATGCACAATAGAACTTTGTGACTTAGCTCAAACCTATTTACTAATGCACAAACAGGAATGGCTGTTGGAAG GGATCTGAAGGGAGAAAAGGACAACGTGATTGCTGTAATTGGTGATGGTGCCATGACAGCTGGTCAAGCTTATGAAGCCA TGAACAATGCTGGATATCTTGATTCTGATATGATTGTTATTCTAAATGATAATAGACAGGTCTCTCTACCAACTGCTACT CTTGATGGTCCCACCCCACCTGTAGGTGCTTTGAGTAGCGCTCTCAGCAGGTTACAATCAAATAGACCTCTCAGAGAACT GAGAGAGGTTGCAAAGGTGAGCACTGAGAAGCACAACTCACAAGTCTCAATCTGTTGAATGATTTTTGCAGATAGATACG AAGTTTTAGTGAAAATGATTCTTGACAACATGAGGATTTTGCAGGGAGTAACTAAACAAATTGGTGGCCCTATGCATGAA TTGGCTGCAAAAGTTGATGAATATGCTCGCGGCATGATCAGCGGTTCTGGATCAACACTGTTTGAAGAGCTTGGGCTGTA CTATATTGGTCCTGTTGATGGTCATAACATAGATGATCTTGTTGCCATTCTCAATGAAGTTAAAAGTACCAAAACAGCTG GTCCTGTACTTATCCATGTTGTCACTGAAAAAGGCCGCGGATACCCATATGCAGAAAAAGCAGCAGACAAGTACCATGGT AAAAGAGCCACTACAAATTTCTTGACTAGCACCAACATAATTCACCACGTAAATTTATCTTGCTAGGCTCACTCAGCTTT AGAATTTGTTGGAGTATTAATTGCATAGCTCTTATACCATCTTAAAATTCGTTATACAACTCTGGTAGGCCTAACTCTAC CATCTTTAGAATGTATTAGGGTTAGGCCTAGCCCAAATTTTAATAGAATGCACCAAGTACCTCTGAGGCCTGAGCCATCC ATTAAAGATATAAAAAAAAATTTAACCTGCCTCTTGACAATTACTGTCAATCACCATGCTTTAATAGTGGATCATAGCCA TTTAGTTATTTCTAGAGAAACACACTACCTATAGGAAGCATTTTTAATCTGACTTGCTATATTCATCACAGGCATGTAAC TTTGTTTGATTTTTCAGGAGTTACCAAGTTTGATCCAGCAACTGGGAAACAATTCAAAGCCAAGCCAACCACCCAGTCAT ACACAACATACTTTGCAGAAGCTTTGATTGCAGAAGCAGAAGCTGACAAAAACATTGTAGGAATCCATGCTGCAATGGGT GGTGGAACTGGCATGAATCTATTCCAGAAGTATTTCCCAACAAGATGCTTTGATGTGGGGATAGCAGAACAGCATGCCGT TACATTTGCTGCGGGTCTGGCTTGTGAAGGTCTTAAGCCTTTTTGTGTAATTTACTCATCATTCATGCAGAGAGCTTATG ACCAGGTAAGATAACAACACACTCTAGTCTCTACATCTTCATCATAGTATTGCTTTATAGTGTGTTTGGATAAATAGATA GTATTTATTGCATAAGTGCTTACTCATAAGCAAATTTGAGAAACTTCAATAAGTTCAAAATAGATTATAAGTAGGTCTAA GCGCTTATTCATAAGCTAATCTCAGCAGCGTATGAAAATAAAACAGCTTATAGGCAGGTCATAAGTTATTTAGTATTTAC ATAAGCTCTCCCGAACGCTTGCATGAGCACTTATACTATAAGATAAACTCAAATAAGCAATTCCAAACAGGGCCTAAGTT AATAATGATTTCAAAAAGACATGCACAACATTGATTTTTGCAAATAATGCTCAAAGTATGTGTTCCATGTCCTTTCCAAG GTGGTGCATGATGTGGATCTTCAGAAGCTGCCTGTAAGATTTGCAATGGACAGAGCTGGATTAGTTGGAGCAGATGGTCC AACCCACTGTGGTGCTTTTGATGTCACTTTTATGGCATGTCTCCCAAACATGGTTGTGATGGCTCCTTCTGATGAAGCAG AGCTTTTCCACATGGTTGCTACTGCAGCTACCATTGATGATCGACCTAGTTGCCTCAGATATCCAAGGGGAAATGGGGTT GGTGTTGAATTACCACAATGGAACAAAGGCACTCCTCTTGAGGTAACTTCGAATTTTACCTGCATTCAAAACGTACCTTA TGAAGTTGATTAGGAACAATTCTTGCAAATCAACTTCGTGCGTGTTTGGAAATCTGCATTTGATTCTGAGGAAAAGGAAA CTAATCCAACCATGGTATTAACATTTGTGTTCTGACATCTTAACAGATTGGAAAAGGTAGGATTTTGATTGGAGGGGAAA GAGTGGCCCTCTTGGGCTATGGATCAGCTGTTCAGAGCTGTGTGGCTGCAGCTTCCTTACTGGAACACCATGGCATGCAT GTAACAGTGGCTGATGCACGTTTCTGCAAACCATTGGATCATTCCCTTATTCGTAGCCTAGCAAAATCACATGAGATTTT GATCACTGTAGAAGAAGGATCAATAGGGGGATTTGGGTCTCATGTTGTTCAGTTCATGGCCCTTGATGGTCTTCTTGATG GAAAATTGAAGGTATGAAATTTGATGTAAAATAGTTACATTAATTTCTTTTATACTAGCATACATGCACCTTTGAAGTTT CCATCAAAAACTCATGTGCCTTTCATTTAACTATTGCAGTGGAGGCCAATGGTTCTTCCTGATTGTTACATTGATCATGG ATCACCTGCTGATCAATTGTCTCAAGCTGGTCTTACACCATCTCACATAGCAGCAACAGTTTTGAACATGCTTGGACAAA CAAGAGAGGCACTAGAGGTCATGTCATGA
CDS sequence (LotjaGi6g1v0304300.8) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGGTTAGGAAAAGGACGTATGGGGTTTATGCATCACTATCAGAGATGGGGGAGTATCATTCACAGAGACCACCAAC TCCTCTGCTTGACACCATAAACTATCCAATTCATATGAAGAATCTCACTACAAAGGAGCTGAAACAACTTGCGGATGAGC TGCGTTCTGATGTAATTTTCAAGGTTTCTAGAACTGGAGGTCACCTGGGGTCAAGCCTTGGTGTAGTGGAACTCACTGTT GCCCTCCACTATGTTTTCAATGCTCCTAAAGATAAAATATTGTGGGATGTGGGTCATCAGTCTTATCCACATAAAATGCT CACTGGTAGGAGGGGTAAGATGAATACCCTGAGGCAGACAGATGGACTATCTGGATTTACAAAACGCTCAGAGAGTGAAT ATGATTGCTTTGGCACTGGTCACAGCTCAACAACAATATCAGCAGGGCTAGGAATGGCTGTTGGAAGGGATCTGAAGGGA GAAAAGGACAACGTGATTGCTGTAATTGGTGATGGTGCCATGACAGCTGGTCAAGCTTATGAAGCCATGAACAATGCTGG ATATCTTGATTCTGATATGATTGTTATTCTAAATGATAATAGACAGGTCTCTCTACCAACTGCTACTCTTGATGGTCCCA CCCCACCTGTAGGTGCTTTGAGTAGCGCTCTCAGCAGGTTACAATCAAATAGACCTCTCAGAGAACTGAGAGAGGTTGCA AAGGGAGTAACTAAACAAATTGGTGGCCCTATGCATGAATTGGCTGCAAAAGTTGATGAATATGCTCGCGGCATGATCAG CGGTTCTGGATCAACACTGTTTGAAGAGCTTGGGCTGTACTATATTGGTCCTGTTGATGGTCATAACATAGATGATCTTG TTGCCATTCTCAATGAAGTTAAAAGTACCAAAACAGCTGGTCCTGTACTTATCCATGTTGTCACTGAAAAAGGCCGCGGA TACCCATATGCAGAAAAAGCAGCAGACAAGTACCATGGAGTTACCAAGTTTGATCCAGCAACTGGGAAACAATTCAAAGC CAAGCCAACCACCCAGTCATACACAACATACTTTGCAGAAGCTTTGATTGCAGAAGCAGAAGCTGACAAAAACATTGTAG GAATCCATGCTGCAATGGGTGGTGGAACTGGCATGAATCTATTCCAGAAGTATTTCCCAACAAGATGCTTTGATGTGGGG ATAGCAGAACAGCATGCCGTTACATTTGCTGCGGGTCTGGCTTGTGAAGGTCTTAAGCCTTTTTGTGTAATTTACTCATC ATTCATGCAGAGAGCTTATGACCAGGTGGTGCATGATGTGGATCTTCAGAAGCTGCCTGTAAGATTTGCAATGGACAGAG CTGGATTAGTTGGAGCAGATGGTCCAACCCACTGTGGTGCTTTTGATGTCACTTTTATGGCATGTCTCCCAAACATGGTT GTGATGGCTCCTTCTGATGAAGCAGAGCTTTTCCACATGGTTGCTACTGCAGCTACCATTGATGATCGACCTAGTTGCCT CAGATATCCAAGGGGAAATGGGGTTGGTGTTGAATTACCACAATGGAACAAAGGCACTCCTCTTGAGATTGGAAAAGGTA GGATTTTGATTGGAGGGGAAAGAGTGGCCCTCTTGGGCTATGGATCAGCTGTTCAGAGCTGTGTGGCTGCAGCTTCCTTA CTGGAACACCATGGCATGCATGTAACAGTGGCTGATGCACGTTTCTGCAAACCATTGGATCATTCCCTTATTCGTAGCCT AGCAAAATCACATGAGATTTTGATCACTGTAGAAGAAGGATCAATAGGGGGATTTGGGTCTCATGTTGTTCAGTTCATGG CCCTTGATGGTCTTCTTGATGGAAAATTGAAGTGGAGGCCAATGGTTCTTCCTGATTGTTACATTGATCATGGATCACCT GCTGATCAATTGTCTCAAGCTGGTCTTACACCATCTCACATAGCAGCAACAGTTTTGAACATGCTTGGACAAACAAGAGA GGCACTAGAGGTCATGTCATGA
Protein sequence (LotjaGi6g1v0304300.8) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQVRKRTYGVYASLSEMGEYHSQRPPTPLLDTINYPIHMKNLTTKELKQLADELRSDVIFKVSRTGGHLGSSLGVVELTV ALHYVFNAPKDKILWDVGHQSYPHKMLTGRRGKMNTLRQTDGLSGFTKRSESEYDCFGTGHSSTTISAGLGMAVGRDLKG EKDNVIAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNRQVSLPTATLDGPTPPVGALSSALSRLQSNRPLRELREVA KGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVAILNEVKSTKTAGPVLIHVVTEKGRG YPYAEKAADKYHGVTKFDPATGKQFKAKPTTQSYTTYFAEALIAEAEADKNIVGIHAAMGGGTGMNLFQKYFPTRCFDVG IAEQHAVTFAAGLACEGLKPFCVIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMV VMAPSDEAELFHMVATAATIDDRPSCLRYPRGNGVGVELPQWNKGTPLEIGKGRILIGGERVALLGYGSAVQSCVAAASL LEHHGMHVTVADARFCKPLDHSLIRSLAKSHEILITVEEGSIGGFGSHVVQFMALDGLLDGKLKWRPMVLPDCYIDHGSP ADQLSQAGLTPSHIAATVLNMLGQTREALEVMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 669 | 658 | 0.0 | ||
| PANTHER | 12 | 669 | 658 | 0.0 | – | |
| SUPERFAMILY | 27 | 414 | 388 | 1.0E-75 | ||
| Hamap | 29 | 663 | 635 | 42.06 | ||
| Pfam | 30 | 315 | 286 | 1.8E-112 | ||
| TIGRFAM | 32 | 662 | 631 | 1.1E-229 | ||
| ProSitePatterns | 55 | 74 | 20 | - | ||
| CDD | 66 | 321 | 256 | 1.11549E-123 | ||
| SUPERFAMILY | 349 | 539 | 191 | 1.57E-60 | ||
| Gene3D | 350 | 525 | 176 | 1.2E-65 | – | |
| SMART | 352 | 517 | 166 | 9.4E-68 | ||
| Pfam | 353 | 513 | 161 | 2.8E-43 | ||
| CDD | 369 | 511 | 143 | 2.20973E-67 | – | |
| ProSitePatterns | 458 | 474 | 17 | - | ||
| SUPERFAMILY | 526 | 662 | 137 | 1.27E-33 | ||
| Gene3D | 531 | 663 | 133 | 5.5E-33 | ||
| Pfam | 531 | 654 | 124 | 4.7E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 1-deoxy-D-xylulose-5-phosphate synthase activity | Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO(2). | ||
| Biological process | Terpenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. |
Expression pattern of LotjaGi6g1v0304300.8, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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