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LotjaGi6g1v0321900.1

Overview

Field Value
Gene ID LotjaGi6g1v0321900
Transcript ID LotjaGi6g1v0321900.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Ubiquitin carboxyl-terminal hydrolase; TAIR: AT4G22350.1 Ubiquitin C-terminal hydrolases superfamily protein; Swiss-Prot: sp|Q5R761|SNUT2_PONAB U4/U6.U5 tri-snRNP-associated protein 2; TrEMBL-Plants: tr|I1L9D9|I1L9D9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0321900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:63812078..63815646) extracted from Lotus japonicus Gifu genome v1.2.

GGGTTGGCCAATAATTATGCTGACATTGATGAGGAAGAGGAAAAGGATGCTAATATTCAGAGGAAGAATGATGGGTCCCA GCATAATGGGCATAAATACCAAGAGGAGGATGATAGTGATGAAGAAGAAGATGAACAATTTGGTGGAAGAAACAGTCGTC ATGTCGAGGTTCGAAAGGACTGTCCTTATCTCGATACCGTTAATAGACAGGTATTTATTTTACTTATCTGGTCTATTGTA CATGATGATTTTACTGGTTTGCGGATGTATTTGAATTTAATTATGTTATGTGCTAATGTGCAGGTTTTGGATTTTGACTT TGAGAAGTTTTGTTCTGTCTCTCTGTCAAACTTGAATGTGTACGCATGTTTGGTTTGTGGAAAGTATTTCCAAGGGAGAG GGAGGAAGTCTCATGCTTATACGCATAGCCTAGAAGCAGGACACCATGTGTATATCAATCTTCGGACTGAAAAAGTCTAC TGTCTTCCCGATGGTTATGAAATTAATGATCCTTCATTAGATGACATCCGACATGTCCTAAATCCAAGGTTGGTCTCATT TTTTACTTGGTATGCTTGCTGCAGAAACTTCTGTAGGCACATATTTCCATGTTCATTGGCTGGTTAGAGAGTTTTATCCA TTTGGAAAAAATTATCCACTCTAGAAATTCATAATTCAAGCTATGGACCTTCCACAAGTTCACCGAGGATTGTGGTTGAA GTGGTCACTTGCCTGCACAAAGTTTGCGAGGTTCTTAGGGTTGAGCCTTGGCTTGGATGTGCTGTGGATAGGCATGGGAC CAGATCTCGGGTGATGCTATATGTATCCCCCATCCACTCTATGGCAGGGCCAATGCTGACTTGGAAATTTAGACAGAACC CTGGACCATCCCTTGGTCTGGTAGGCAGGGGTTCAGCCCGGCTGTTCAGGCCAACCTTTGAATCCCATACTTTAAAAAAA ATCACGAGGAATAGTTATTTTATAGTACGTTTTTTTTAGGCTGTTGATGTTAGGTTTTTTCTTCATAAATGCCTATTAAG ATTAGGGCATTTGTTTCCTTAGGTGCTGGGTTTGGGCATTGCATTACACGCATTCAGATTTATTGCTCAATGAATTCAGT TCCCTGGTTAGCTTTGTTATGCACTTGTCTTCTTTGTTCTGCCTGTGGATGTGCCAAACTTCTTGTGATGTGCTTGTTAT TTGGTGCTCATGGGTCACTTGCCTTCACCTTAAAACATTGAATTTCTTCTTGAATTCAGAATTACATTGACATCTTTATG GCCCTACGAGTAGAGTTGTTTTTTACCGAAATCATTTAACATTCCATGCTCACTTTACCCTGTCATTAGCTTTTTCTACA GACCGACTTATATAATATATGTAACTGCATTAATATGGTTCTCTATCTGCAGGCTTACTGCAAAAGAAGTCGAACAGCTT GACAAAAATAAGCAGTGGTCTAGGGCACTTGATGGTTCTAGTTACCTACCTGGAATGGTATATTTCTTCTTACTTATAAA GATTGGAATTTTACTTTTTTGTTGATTGGTAGTAGATGTTTTATGGCTTATATCAGTTATATGTATCCATTATATGATAA ATTTTCAGGTAGGGCTGAATAATATCAAGGAGACTGATTTTGTGAATGTAACAATTCAGTCCTTAATGAGAGTTACCCCC TTGAGGAATTTTTTCCTTATCCCTGAAAACTATCAACACTGCAAATCTCCTCTTGTTCAACGATTTGGTGAACTCACTAG GAAGATCTGGCATGCACGGAACTTTAAAGGACAGGTTTGTTCCTTAAATATTCATTGTAAATCTATTATTTGTATAGTTT GATGGCTTATCTTTCAGATGTGTGTCAACAGGTCAGCCCACACGAGTTTCTACAAGCAGTGATGAAAGCCAGTAAAAAAA GGTTTCGGATAGGTGCGCAATCTGACCCAGTGGAGTTCATGTCATGGCTTCTTAACACTCTTCATGCAGATCTTAAAACT TCAAAGAAGAATATGAGCATAATTTATGAGTGTTTTCAGGTTCTTTCTTATCCACTGTAATTTTGTATTCCTTTTCTTTT TGATGTATTGTTCTGGTTGATATAAGCACTGAGTAATGTTTGCTGTTAATTTCACTGCGCGCTTGCAGGGTGAACTTGAG GTTGTAAAAGAGATTCCTAACAGAATGATTATTGATAAGAAAGAAGACGGTGAGGATCAAAACAACGTTGAGAAACTTTC TGATGGAGGAACTCAGAGAAATGCGTTCCTCAAAGAAACTTCAAAAATGCCATTTCTAATGTTAGGGCTGGACTTGCCAC CACCTCCGCTTTTCAAGGATGTGATGGAGAAAAATATAATACCCCAGGTGCCACTTCCTGGATTATTACTTTACTTTGTT ACATATGAAAGCTGCAGTCTATAATCTACATATAAATGTCGAGAAGGATGTTATAATTGTGACACCAAAACTGCTAACTT ATTGTCACTTCTATACAATTATTTATAAACAAAACATGTACTTCATGATATTTACCTGGCAGATTGTGCATATGCTGTCA TGCATCCCTTGCCCTTTTTTTTCTCTTGGTCTCTTACCCAACTTTTCAAGTCAAGTAGATATTTTGTTTATGATCATGTT GAACTCTAAATGGACTGCATCTTTGCTGCTACTTAATTATCTCACCTATAAAAACGTATTTTTTATTTAGTAGAGTTGAA TGATAGATCTAAGCATCAAAGATGAGTAAAAGCTTGGAAATAAATGGTATAATTCCCATTGATGCAAACATAAGTCATTC ATTTTGCAATTCTATAATCTATAGATGAACTTTCTATTTATTTTTTCCGTTTCCATGGACTGAATTGAGTTTCAATTTCA GTTTTGAAGTTTTATCTGTCTCTGTCCTCTTGCCTGCTGACAAGGTCTTGTTTCTAGGTTCCACTCTTTAACATACTAAA GAAGTTTGACGGTGAGACTGTCACAGAAGTGGTCCGTCCTCATATTGCAAGGATGCAGTATCGTGTTACCAGATTGCCTA AGTATATGATTATTCACATGCGACGATTTACGAAGAATAATTTTTTCGTGGAAAAGAATCCTACTTTAGGTAAGAATTGA TGTTGAAATGAACTGTAAATTATTCAAGTTAAAATCAGCCTGCTTAGTTCAGATTTCATCCTCACCCGTGAATATTTGTT TCAGTCAACTTTCCTGTGAAGAATCTGGAGTTGAAGGATTACATTCCCTTGCCAACACCAAAAGAAAATGAGAAATTGCG ATCTAAATATGATTTAATTGCCAATATTGTTCATGATGGCAAACCTGGTGAAGGAGTCTATAGAGTATTTGTGCAACGCA AATCAGAAGAATTATGGTATATACTATTTCTTGATAAGATAAAATATGCATCAATCTGAATGGATATCTAACAATGACAA GGAGTCAAGGACTAACGCCTTGATTACTTTTTCAGGTACGAGATGCAGGATTTACACGTCTCAGAAACACTTCCTCATTT GGTTGCACTTTCAGAAACTTATATGCAGATATATGAGCAGCAGCAGTGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0321900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTAGGGCTGAATAATATCAAGGAGACTGATTTTGTGAATGTAACAATTCAGTCCTTAATGAGAGTTACCCCCTTGAG GAATTTTTTCCTTATCCCTGAAAACTATCAACACTGCAAATCTCCTCTTGTTCAACGATTTGGTGAACTCACTAGGAAGA TCTGGCATGCACGGAACTTTAAAGGACAGGTCAGCCCACACGAGTTTCTACAAGCAGTGATGAAAGCCAGTAAAAAAAGG TTTCGGATAGGTGCGCAATCTGACCCAGTGGAGTTCATGTCATGGCTTCTTAACACTCTTCATGCAGATCTTAAAACTTC AAAGAAGAATATGAGCATAATTTATGAGTGTTTTCAGGGTGAACTTGAGGTTGTAAAAGAGATTCCTAACAGAATGATTA TTGATAAGAAAGAAGACGGTGAGGATCAAAACAACGTTGAGAAACTTTCTGATGGAGGAACTCAGAGAAATGCGTTCCTC AAAGAAACTTCAAAAATGCCATTTCTAATGTTAGGGCTGGACTTGCCACCACCTCCGCTTTTCAAGGATGTGATGGAGAA AAATATAATACCCCAGGTTCCACTCTTTAACATACTAAAGAAGTTTGACGGTGAGACTGTCACAGAAGTGGTCCGTCCTC ATATTGCAAGGATGCAGTATCGTGTTACCAGATTGCCTAAGTATATGATTATTCACATGCGACGATTTACGAAGAATAAT TTTTTCGTGGAAAAGAATCCTACTTTAGTCAACTTTCCTGTGAAGAATCTGGAGTTGAAGGATTACATTCCCTTGCCAAC ACCAAAAGAAAATGAGAAATTGCGATCTAAATATGATTTAATTGCCAATATTGTTCATGATGGCAAACCTGGTGAAGGAG TCTATAGAGTATTTGTGCAACGCAAATCAGAAGAATTATGGTACGAGATGCAGGATTTACACGTCTCAGAAACACTTCCT CATTTGGTTGCACTTTCAGAAACTTATATGCAGATATATGAGCAGCAGCAGTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0321900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYQHCKSPLVQRFGELTRKIWHARNFKGQVSPHEFLQAVMKASKKR FRIGAQSDPVEFMSWLLNTLHADLKTSKKNMSIIYECFQGELEVVKEIPNRMIIDKKEDGEDQNNVEKLSDGGTQRNAFL KETSKMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHIARMQYRVTRLPKYMIIHMRRFTKNN FFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPGEGVYRVFVQRKSEELWYEMQDLHVSETLP HLVALSETYMQIYEQQQ
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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21646
1 335 335 4.5E-143 –
Gene3D
G3DSA:3.90.70.10
1 337 337 1.6E-84 –
PANTHER
PTHR21646:SF16
1 335 335 4.5E-143
IPR033809
Pfam
PF00443
2 333 332 3.5E-38
IPR001394
ProSiteProfiles
PS50235
2 336 335 33.308
IPR028889
SUPERFAMILY
SSF54001
2 335 334 1.04E-57
IPR038765

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000245
Biological process Spliceosomal complex assembly The aggregation, arrangement and bonding together of a spliceosomal complex, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions.
Subterm of
Part of
GO:0006397
Biological process MRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
Subterm of
GO:0016579
Biological process Protein deubiquitination The removal of one or more ubiquitin groups from a protein.
Subterm of
GO:0036459
Molecular function Thiol-dependent ubiquitinyl hydrolase activity Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0321900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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