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IPR033809 is a USP39.
<p>This entry contains members of peptidase family C19 known as USP39 (MEROPS identifier C19.972; also known as U4/U6.U5 tri-snRNP-associated protein 2). The name is misleading because the active site residues are not conserved, and members of this cluster are known not to be ubiquitin hydrolases [[cite:PUB00081314]]. Homologues are found in eukaryotes [[cite:PUB00081763], [cite:PUB00081764]]. It is a component of the spliceosome where it regulates Aurora B mRNA levels, thus playing a role in cytokinesis and in the spindle checkpoint [[cite:PUB00081314]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Spliceosomal complex assembly | The aggregation, arrangement and bonding together of a spliceosomal complex, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions. | ||
| Biological process | MRNA processing | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Glycine max] gi|356534252|ref|XP_003535671.1| | 6 | ||
| – | PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Glycine max] gi|356534252|ref|XP_003535671.1| | 18 | ||
| – | PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Glycine max] gi|356534252|ref|XP_003535671.1| | 18 | ||
| – | Ubiquitin carboxyl-terminal hydrolase; TAIR: AT4G22350.2 Ubiquitin C-terminal hydrolases superfamily protein; Swiss-Prot: sp|Q53GS9|SNUT2_HUMAN U4/U6.U5 tri-snRNP-associated protein 2; TrEMBL-Plants: tr|V7BEY8|V7BEY8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0388200 | 19 | ||
| – | Ubiquitin carboxyl-terminal hydrolase; TAIR: AT4G22350.2 Ubiquitin C-terminal hydrolases superfamily protein; Swiss-Prot: sp|Q53GS9|SNUT2_HUMAN U4/U6.U5 tri-snRNP-associated protein 2; TrEMBL-Plants: tr|V7BEY8|V7BEY8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0388200 | 19 | ||
| – | Ubiquitin carboxyl-terminal hydrolase; TAIR: AT4G22350.2 Ubiquitin C-terminal hydrolases superfamily protein; Swiss-Prot: sp|Q3TIX9|SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2; TrEMBL-Plants: tr|V7BEY8|V7BEY8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0388200 | 19 | ||
| – | Ubiquitin carboxyl-terminal hydrolase; TAIR: AT4G22350.1 Ubiquitin C-terminal hydrolases superfamily protein; Swiss-Prot: sp|Q5R761|SNUT2_PONAB U4/U6.U5 tri-snRNP-associated protein 2; TrEMBL-Plants: tr|I1L9D9|I1L9D9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0321900 | 10 | ||
| – | Ubiquitin carboxyl-terminal hydrolase; TAIR: AT4G22350.2 Ubiquitin C-terminal hydrolases superfamily protein; Swiss-Prot: sp|Q3TIX9|SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2; TrEMBL-Plants: tr|V7BEY8|V7BEY8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0321900 | 20 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 12.50 |