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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0345600 |
| Transcript ID | LotjaGi6g1v0345600.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Squalene monooxygenase; TAIR: AT1G58440.1 FAD/NAD(P)-binding oxidoreductase family protein; Swiss-Prot: sp|O48651|ERG1_PANGI Squalene monooxygenase; TrEMBL-Plants: tr|A0A075DZG2|A0A075DZG2_ASTME Squalene epoxidase; Found in the gene: LotjaGi6g1v0345600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65825478..65831462) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATTATCATTATATTCTGGGAGGGATTGTAGCTTCTGTAACACCCCAATTCTAAACGGCATATGTATTGCAAATATC AGAGTGATAAAAATTTTAACACTCATGAGGCATTACATAATCACTTAAAACATTAACATAATGCTCTTGTAACAGATACA TAGCACATAAACTTTGAGATGAACTCATAAATAAACTTAAATGCTCTTGTGACAGTTAATTAGTCTTTGAACTAGTTCAC TTTGACAAATAGTTATGCAGCGAATCCAATGTCTTTAAAACTTAAAGAAAACATAGTATCTTGCCCACAACTTAAAACAG AAACAACTTCTCAAATAACAACTTAATTCAAATTATAACAGAAGGAAAACAAGCGTCCATTTCCCCCCCGAGTGCTACGT ATCAGAGCAAGGACTCCAACTCGAAATAAAGGCTATAGACTACTCCTCCTGATTACCTGCACGTTACCAACAAGGGTAAC ATTCAAACAGAAGGGGTGAGATATCGAGTATCATAAATATAAGAATGGCAATAAATATGCTAGATTAATGCCACACCACT TCTTTTTATATTCATATAGCTCAGTTACTAAAACAGTCACAAATAACGTCATCGACTCGGATACAATTCGAACACAACAA TGACTATGCATATGTATGTGGTACCAACAAGGCTTCAGCCCTCATCACTAATTGCCAATTATTGGAGGCACAAGGCATAA GCCTTCATCACAAATCGCCAATACAGGCCATCACAGAGTATGCAGATGCTATGCGACTCAAAAGGACGTATACATCTCAT AATCATCACTTCGACATGAGGCATTGCGCCTATATCACTACATCACTAACATCGCTTAAAACAACACAATTCAGCACACA TGCATTTTTATCAACTATACAATTACCCTGACATCTTAGGCAATTTTGGCACCAAATCAATGAAACAACTCACTTAAGCA TGCAATCATGGAAGAAGCTATCACATATGGTAAATAAATTATGGATTTCATGCTAAAGGTGTTCAGCCACATGCATCATC CTCATAGCTAATACATGGCACATAAAGACATTAACTTTCATACAACATGTAAGCTAAATCTAATTATATTTCCAAAACAA TCATAATTTCCGTAATCTGGAAAAACAGCAGGAACACCAGCCACTAAAAGCGGTCTCCTGAATTCGTTACTGAACCAAAA ATCATGTATTTTATATGCCTAGAAAGCTAACTTAAAGTCCTACAATTTCTTAGTTGATCACATCCTCATTTGAGCACTCT AACTGGGCGAAAACAGGTCTCGAAGTGTACTGTCCAGCCCAGGAAATTTTGGACAGCAGCACAGCATCATCAAATCCGTG CATAAATCATATAGCAGTTCAGGAATTACGCTCACAGCAGAAGCATATTTCAGTAGAGATAACCTACAAGATTCGTTACT TGTTCAAAAATTACAAATGACCTCAATTTGAAAAGCTAACAGAAAACTCCACCTCTTTCTAGTTCATCAAAGAATTTTCT GGGCACATTAACAAGGTGAAAAATCACGTTGAAGTTCATTGGGAGAGATAGCAGATACAGAGCGCAGAAAAACATGGTTT ACTAAACTGAACTTACAGACCTCGTCTCTCAACCAAAAATTATGTACCATATCATTCCAGAAAGCTCTTTCAAAGGCCTA CACTTTCTCAGTTCAACGCAACATTATTCGAGAACTCTAAACAGGCTCTAAAAGGCTTCGAAAGTCACGGTTCATACCAG GAAAATGACCAGTCCGTTTTATGTTCCAAAATAAGTGATTAAAGTTGTTTATCATCAAACAAGACACAAAACCTAACAAG CATGCTACCTAACAGTCCTTATGTGCGTGATCATAAAGAAAATCAAAAGGGAACCTCAACCCAAAACTCCTAGCATACTA TGGTTCTGCCCTCACCCCGTTCAATCACACAAAAGAAAATCCCAAAATCAATGGATTTCAAATCAGATTTCCAGAACATC ATTAACAGAAACAATTCTACATCTCCCAAATCCCTAATATCATTCACCATAATTCCATTAGAAACTCAAAATCCCACCCT TACCTTTGGATTGAGTGCAGCTCCCCGTTCCCGTTCGAATTCTCCGAAGCCGATCCGCTCTCCCTCTCTTCCTGCTACTT CACGCACAGCCTTCTTCTTTTTTTTTCTCCTTCTTTCACGCGTCATCTTCTTTCTTATTTTTTTTTTTTTTAGCTGCTTC CCTATCCTTATTAAACCATCTAAACCTAATTCCTCAAGGGCTGAACTAAAAATCCTAAAATCTCTCCTAGTCCTTGTCTC TATTTTTAATCCTAACTTTCACCCCTAGCTCTCTTCCATTTCATAAAACACACCCAGCATCACAAAAAAAATATTTTATT TCATTAAAGTATTATTATATCACCTATTAAACCACCATACAATATAATCTTAATTAAAATAAAATACCAACATTATTTTA ATTAAAAACGGGGTGTTACAGCTTCTAGTTTGGTTCTTTTGTTTGCTTTGCACGGTTTTGCTTTTGCAGCTAAGAAGAAG GCCACAAGTAAAATTCAGGAAGAAAGTAATGGTCGAATTATAAGGACATCAGAAAATGGAAAATGCTCAACAGAAGCTTC AGAAGATGTGGATATCGTTATTGTGGGTGCTGGTGTTGCTGGTGCAGCCCTTGCTTACACGCTTGGAAAGGTAGAAAGTT TTTTTTTTTTTTTTTTTAAGTTTGTGAAATGAAACAGTTTTCTTGAGTCACAACCTGCAAATAAGTTTTATCTCAATATA TATGTTTGTACATGAGGGTGAGCTCAACGCAACCTTAAGGTTGCTGCTATGTGACTTTGCAGTCATAGGTTCGAGCGGTA GAATCAATTTTTTTCCAAAAATGCAAGGTAAAACTACCTGCATGAGATCCACTTTGTGTCACAAGTTTTGTCTTTTCGAT ATGTTTGTACTTATGTAACCGGATCCAAGTGGAAAATATATATGTTTTGGAGAACCTTGGGGATTTTACACAATGAAGCA TATGTTTATTGTTTTAAAGTGATCAATGATCTTGAGTTTTATTTCATGTTTCAGGATGGAAGGAGAGTGCATGTTATTGA AAGGGACCTAACTGAACCAGATAGGATTGTGGGTGAATTGCTACAACCTGGAGGTTATCTTAAGCTAATTGAGCTGGGTC TTGAAGGTAAGCAACTACGCAAGAAACATGTCAAATGTGACACACATATATTAGAATTAGAATTTGATAGATGAGGATTT TTAGTCCATTGAATTTGCAAATTCCTCTGCCTTTGCTGGACAAATTCAAGGCACTTAAAAAATGATTGTTATGAGTCATT GCAGATTGTGTGGATGAAATTGATGCTCAGAGAGTCTTTGGATATGCACTTTACAAGGATGGGAAGAATACCAAACTTTC CTATCCCTTGAAAAAATTTGACTCTGATATCTCTGGGAGAAGCTTTCACAATGGCCGTTTCATTCAGAGAATGCGAGAGA AGGCTTCATCTCTTCCAAAGTACAAGTTTTTATCATATTTTCATTCCTGAAAGGATTCCTTGCTTCTGAAGTTAAAAAAA ATTCTTGGAAAACACCTTCTTACTTCCAATTTTGTGCAGTGTCAAGTTAGAACAAGGAACTGTCGCATCTCTACTTGAAG AAAATGGGACAATCAAAGGGGTGCTCTACAAAACCAAGAGTGGACAAGAGCTCACAGCAATGGCTCCTCTCACCATAGTA TGTGATGGTTGTTTCTCCAACTTGAGACGTTCTCTTTGCAACCCAAAGGTAATCATGCTGATTATTGATTGTTTGTTTAA TGTGTATTTGGAAACTTGGTAGATTTACACGTTTGTGGAGATGTGCTTCAGAAAAGAACTCAGGTTGATTCACATGTGTT TGGATCAGTGTTCTCAGAATAAATTTTGGATAAAATTGATTTTGGTAATTCTGATTATGGTAAAAAGTGAGTTGAAAGTG AAATGATTTTTGTTTGGATTCGTTTAAAATAGGAAAAGTGATTTCGATAGGATAATTTTGTGAAATCCAGTTATGAAATC TCATATGTACACCACATAAGCTACTCCCCCTATTGATTTCTAGCTTCTATGCACTCCCAAAATCAATTCTCTTAAGTGTG TTTGGATACACGGTAGATTGTCATGTTGGAAGGAGAATTTATTCCGAGAGAAGCTACTAGTAGCATTTTAGTAGAAGTGA TTTTGGAAGATTTGAAACGTGAATCCAAACATGATGTAAGTTGATTGCCAAACATCTATAGAACCACCTAGAAGTGATTC TAGTCAATTAGAAGTGATTCTAATACTCTCAAACGTGGAACCAAACACATACTAAGAGCAGCTTCTGTGGAGAGGGTACC AATTCTGAGAAGAATAAAAGTGGATCCAAACATATTATGTTATTGCACCTACATGGTTTTATCTTTTTTCAATTATAGTT CATTGTTGCTTGACACATGATGAGTACACTTATTTGTACAGGTTGATGTACCATCTCATTTTGTTGGTCTAGTTCTGGAA AACTGCAACCTTCCACATGCAAACCATGGCCATGTTGTCTTGGCTGATCCTTCTCCCATCTTGTTTTACCCCATTAGCAG CACTGAGATTCGGTGTTTGGTTGATGTGCCTGGCCAAAAATTACCATCCATTGGTAATGGTGACATGGCTCATTATTTGA AAACAGTAGTAGCTCCTCAGGTACAATAATCATTCATTCTTACATCTTACAATAATCATTCTTGCGGTTAGGGTCGCGGT TGTTGGTGCATTGTGAAATTACGGACAAATGCAGGTTGGAGTGGCCGCGATGCTGATGCGGGGGCTCCATAACTCCTTAT GTTGCGGCTGCAAACGTTTCTGCAACTAATGGAAGGGAATTGAACTGTGTTTCAGGTTCCGCAAGAGCTGCAATCTGCAT TTGTAGCAGCGGTTGATAAAGGAAGCATAAGAAGCATGCCAAACAGAAGCATGCCTGCATCTCCTCAGCCCACACCCGGT GCCCTTCTGATGGGAGACGCCTTCAACATGCGCCACCCGTTAACTGGAGGAGGAATGACTGTTGCTTTGTCTGACATTGT TTTGTTAAGGGATCTTCTTAGGCCTTTGCAGGATCTGCATTGTGCTTCTTCTCTTTGCAAATATCTGGAATCATTCTACA CCCTTCGCAAGGTAAGTAGACTCGTTCGGATGCAAACCAAATAGCACTTATCAAGTGGAGCATATTTAGTGCTTTTTCCA GTAAATAGACCTTAATAAGCTCGTATCCAAACAGACTCTTAATATACAATTTATAAAGTGTTACCTGCCTCCTTAAGCTC TCTCTTGTATTCTTAACTTGCTAAATACCCTTTGTCATGTTTGATTAGTAACTTAATGAGAAACAACTTGGTTTTGTTTG CAGCCAGTGGCATCTACAATAAACACATTAGCTGGGGCATTATACAAGGTGTTTTGTGCTTCCCCTGATCCAGCTAGTAA GGAAATGAGGCAGGCATGTTTTGATTATTTGACACTTGGAGGTGTTTTCTCAGATGGACCAATAGCTCTTCTCTCTGGTC TAAATCCAAAGCCATTAAGCTTAGTTCTCCACTTCTTTGCCGTGGCTATTTATGGTGTTGGTCGTTTATTGGTACCATTT CCTTCTCCAAAACGCATGTGGATTGGAGCTAGATTGATTTCGGTTAGTATATCTCTTTTTTTCTCAGATACCAATGCTAA TCTATGGTGGAACAAGTTCTGTATATTAGTGATTAATGGTAGAATTGAATTTATGATTCTGAATCAAAAATTTTATTAAC ATTTCAGGGTGCATCTGGTATTATATTTCCTATTATTAAGGCTGAAGGAATCAGACAAATGTTCTTCCCAGTAACTGTGC CTGCATATTACAGAGCACCTCCTGCCAAATTTGCATGATTCAACACCGATTCAATACACATCTAG
CDS sequence (LotjaGi6g1v0345600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTATCATTATATTCTGGGAGGGATTGTAGCTTCTGTTCTTTTGTTTGCTTTGCACGGTTTTGCTTTTGCAGCTAA GAAGAAGGCCACAAGTAAAATTCAGGAAGAAAGTAATGGTCGAATTATAAGGACATCAGAAAATGGAAAATGCTCAACAG AAGCTTCAGAAGATGTGGATATCGTTATTGTGGGTGCTGGTGTTGCTGGTGCAGCCCTTGCTTACACGCTTGGAAAGAAA GTGATCAATGATCTTGAGTTTTATTTCATGTTTCAGGATGGAAGGAGAGTGCATGTTATTGAAAGGGACCTAACTGAACC AGATAGGATTGTGGGTGAATTGCTACAACCTGGAGGTTATCTTAAGCTAATTGAGCTGGGTCTTGAAGATTGTGTGGATG AAATTGATGCTCAGAGAGTCTTTGGATATGCACTTTACAAGGATGGGAAGAATACCAAACTTTCCTATCCCTTGAAAAAA TTTGACTCTGATATCTCTGGGAGAAGCTTTCACAATGGCCGTTTCATTCAGAGAATGCGAGAGAAGGCTTCATCTCTTCC AAATGTCAAGTTAGAACAAGGAACTGTCGCATCTCTACTTGAAGAAAATGGGACAATCAAAGGGGTGCTCTACAAAACCA AGAGTGGACAAGAGCTCACAGCAATGGCTCCTCTCACCATAGTATGTGATGGTTGTTTCTCCAACTTGAGACGTTCTCTT TGCAACCCAAAGGTTGATGTACCATCTCATTTTGTTGGTCTAGTTCTGGAAAACTGCAACCTTCCACATGCAAACCATGG CCATGTTGTCTTGGCTGATCCTTCTCCCATCTTGTTTTACCCCATTAGCAGCACTGAGATTCGGTGTTTGGTTGATGTGC CTGGCCAAAAATTACCATCCATTGGTAATGGTGACATGGCTCATTATTTGAAAACAGTAGTAGCTCCTCAGGTTCCGCAA GAGCTGCAATCTGCATTTGTAGCAGCGGTTGATAAAGGAAGCATAAGAAGCATGCCAAACAGAAGCATGCCTGCATCTCC TCAGCCCACACCCGGTGCCCTTCTGATGGGAGACGCCTTCAACATGCGCCACCCGTTAACTGGAGGAGGAATGACTGTTG CTTTGTCTGACATTGTTTTGTTAAGGGATCTTCTTAGGCCTTTGCAGGATCTGCATTGTGCTTCTTCTCTTTGCAAATAT CTGGAATCATTCTACACCCTTCGCAAGCCAGTGGCATCTACAATAAACACATTAGCTGGGGCATTATACAAGGTGTTTTG TGCTTCCCCTGATCCAGCTAGTAAGGAAATGAGGCAGGCATGTTTTGATTATTTGACACTTGGAGGTGTTTTCTCAGATG GACCAATAGCTCTTCTCTCTGGTCTAAATCCAAAGCCATTAAGCTTAGTTCTCCACTTCTTTGCCGTGGCTATTTATGGT GTTGGTCGTTTATTGGTACCATTTCCTTCTCCAAAACGCATGTGGATTGGAGCTAGATTGATTTCGGGTGCATCTGGTAT TATATTTCCTATTATTAAGGCTGAAGGAATCAGACAAATGTTCTTCCCAGTAACTGTGCCTGCATATTACAGAGCACCTC CTGCCAAATTTGCATGA
Protein sequence (LotjaGi6g1v0345600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDYHYILGGIVASVLLFALHGFAFAAKKKATSKIQEESNGRIIRTSENGKCSTEASEDVDIVIVGAGVAGAALAYTLGKK VINDLEFYFMFQDGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGLEDCVDEIDAQRVFGYALYKDGKNTKLSYPLKK FDSDISGRSFHNGRFIQRMREKASSLPNVKLEQGTVASLLEENGTIKGVLYKTKSGQELTAMAPLTIVCDGCFSNLRRSL CNPKVDVPSHFVGLVLENCNLPHANHGHVVLADPSPILFYPISSTEIRCLVDVPGQKLPSIGNGDMAHYLKTVVAPQVPQ ELQSAFVAAVDKGSIRSMPNRSMPASPQPTPGALLMGDAFNMRHPLTGGGMTVALSDIVLLRDLLRPLQDLHCASSLCKY LESFYTLRKPVASTINTLAGALYKVFCASPDPASKEMRQACFDYLTLGGVFSDGPIALLSGLNPKPLSLVLHFFAVAIYG VGRLLVPFPSPKRMWIGARLISGASGIIFPIIKAEGIRQMFFPVTVPAYYRAPPAKFA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 536 | 536 | 0.0 | ||
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 536 | 536 | 0.0 | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| TMHMM | 4 | 26 | 23 | - | – | |
| Phobius | 6 | 26 | 21 | - | – | |
| Phobius | 27 | 468 | 442 | - | – | |
| SUPERFAMILY | 58 | 447 | 390 | 2.92E-42 | ||
| Gene3D | 60 | 411 | 352 | 1.8E-36 | ||
| PRINTS | 60 | 82 | 23 | 4.1E-9 | – | |
| TMHMM | 61 | 78 | 18 | - | – | |
| Gene3D | 114 | 338 | 225 | 1.8E-36 | – | |
| PRINTS | 222 | 237 | 16 | 4.1E-9 | – | |
| Pfam | 223 | 495 | 273 | 5.9E-119 | ||
| PRINTS | 350 | 365 | 16 | 4.1E-9 | – | |
| PRINTS | 365 | 381 | 17 | 4.1E-9 | – | |
| TMHMM | 466 | 488 | 23 | - | – | |
| Phobius | 469 | 488 | 20 | - | – | |
| Phobius | 489 | 493 | 5 | - | – | |
| Phobius | 494 | 512 | 19 | - | – | |
| TMHMM | 495 | 512 | 18 | - | – | |
| Phobius | 513 | 538 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Squalene monooxygenase activity | Catalysis of the reaction: H(+) + NADPH + O(2) + squalene = (S)-2,3-epoxysqualene + H(2)O + NADP(+). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Sterol biosynthetic process | The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi6g1v0345600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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